Wall clock time and date at job start Tue Mar 31 2020 23:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 F 1.39896 * 109.47466 * 324.99832 * 7 5 4 9 9 F 1.39903 * 109.47418 * 84.99943 * 7 5 4 10 10 C 1.50707 * 109.47209 * 204.99819 * 7 5 4 11 11 C 1.38241 * 119.99651 * 269.72784 * 10 7 5 12 12 C 1.38238 * 119.99526 * 179.76131 * 11 10 7 13 13 C 1.38238 * 120.00056 * 0.51160 * 12 11 10 14 14 C 1.38231 * 119.99783 * 359.74332 * 13 12 11 15 15 C 1.38231 * 120.00315 * 89.99938 * 10 7 5 16 16 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 17 17 O 1.21280 * 120.00203 * 256.03360 * 16 2 1 18 18 N 1.34779 * 120.00030 * 76.02141 * 16 2 1 19 19 C 1.46499 * 119.99988 * 5.37097 * 18 16 2 20 20 C 1.46498 * 120.00081 * 185.37169 * 18 16 2 21 21 C 1.50702 * 109.47304 * 90.00354 * 20 18 16 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99989 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47228 * 60.00334 * 25 23 21 27 27 H 1.48503 * 109.47130 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47200 * 299.99818 * 25 23 21 29 29 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 30 30 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 31 31 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 32 32 H 1.07993 * 120.00441 * 359.97438 * 11 10 7 33 33 H 1.07999 * 119.99827 * 180.22673 * 12 11 10 34 34 H 1.07995 * 119.99968 * 179.72246 * 13 12 11 35 35 H 1.08009 * 119.99842 * 179.97438 * 14 13 12 36 36 H 1.08008 * 119.99773 * 0.02562 * 15 10 7 37 37 H 1.09006 * 109.47084 * 84.81792 * 19 18 16 38 38 H 1.08994 * 109.47590 * 204.81862 * 19 18 16 39 39 H 1.09006 * 109.47202 * 324.82157 * 19 18 16 40 40 H 1.09001 * 109.47134 * 210.00388 * 20 18 16 41 41 H 1.09001 * 109.47100 * 330.00088 * 20 18 16 42 42 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 9 2.1787 -1.8626 3.6669 9 9 4.1144 -0.6593 3.5104 10 6 2.2969 0.2546 4.7334 11 6 3.1206 1.2630 5.1978 12 6 2.7319 2.0292 6.2807 13 6 1.5243 1.7802 6.9058 14 6 0.7031 0.7684 6.4446 15 6 1.0894 0.0056 5.3584 16 6 2.0324 -0.7104 -1.2304 17 8 2.4736 -1.8367 -1.1428 18 7 1.9913 -0.0941 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3688 -0.8242 -3.6410 21 6 1.1505 -1.4918 -4.2253 22 1 0.1911 -1.3834 -3.7414 23 6 1.2610 -2.2417 -5.3770 24 7 2.4295 -2.3742 -5.9659 25 14 -0.2489 -3.0698 -6.1008 26 1 -1.2638 -2.0399 -6.4394 27 1 0.1338 -3.8097 -7.3301 28 1 -0.8171 -4.0174 -5.1087 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8299 31 1 -0.3633 -1.0217 0.1098 32 1 4.0662 1.4544 4.7125 33 1 3.3737 2.8194 6.6413 34 1 1.2226 2.3758 7.7546 35 1 -0.2402 0.5735 6.9332 36 1 0.4480 -0.7854 4.9985 37 1 2.4229 1.9558 -2.3267 38 1 1.1775 1.5043 -3.5155 39 1 0.7924 1.4992 -1.7776 40 1 2.7861 -0.1284 -4.3690 41 1 3.1136 -1.5804 -3.3928 42 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915586704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:59 Heat of formation + Delta-G solvation = -171.808892 kcal Electronic energy + Delta-G solvation = -29872.275896 eV Core-core repulsion = 25261.391078 eV Total energy + Delta-G solvation = -4610.884818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.59910 -47.61236 -40.99130 -39.60820 -38.97773 -36.80863 -34.95676 -32.92279 -32.61104 -31.73170 -31.40558 -28.03113 -27.76995 -26.13533 -24.66645 -23.43546 -23.10397 -22.20018 -21.07826 -19.13376 -19.00456 -18.32690 -18.01543 -17.20806 -16.59557 -16.39629 -16.29891 -15.99982 -15.43192 -15.17552 -15.07392 -14.76264 -14.52544 -14.28210 -14.05868 -14.00837 -13.67053 -13.62669 -13.37061 -13.07869 -12.96939 -12.81946 -12.44067 -12.26091 -12.11627 -11.82700 -11.78246 -11.59509 -11.58198 -11.27648 -10.98792 -10.91596 -10.84737 -10.59668 -10.20819 -9.71469 -9.52054 -9.40221 -9.00418 -8.47636 -7.78144 -6.08792 -4.14540 0.59391 0.92511 1.43886 1.78191 3.08530 3.14429 3.29364 3.31797 3.34350 3.36433 3.39519 3.85984 4.02574 4.30124 4.40085 4.51563 4.56231 4.64849 4.70967 4.89036 4.95713 4.96301 5.08324 5.25663 5.31323 5.43251 5.52356 5.53827 5.59956 5.80557 5.88918 5.90185 5.94322 6.00842 6.05031 6.17307 6.42008 6.90657 7.13213 7.35686 7.42652 7.86421 8.15771 8.22191 8.77681 8.93211 9.50620 10.99318 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.002442 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.484596 B =11463.133864 C =11481.122359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.067 3.933 3 H 0.107 0.893 4 O -0.305 6.305 5 C 0.433 3.567 6 O -0.460 6.460 7 C 0.373 3.627 8 F -0.165 7.165 9 F -0.165 7.165 10 C -0.152 4.152 11 C -0.066 4.066 12 C -0.121 4.121 13 C -0.094 4.094 14 C -0.121 4.121 15 C -0.078 4.078 16 C 0.510 3.490 17 O -0.516 6.516 18 N -0.595 5.595 19 C 0.072 3.928 20 C 0.246 3.754 21 C -0.531 4.531 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 11.354 24.627 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 H 0.124 0.876 4 O -0.219 6.219 5 C 0.270 3.730 6 O -0.346 6.346 7 C 0.334 3.666 8 F -0.145 7.145 9 F -0.145 7.145 10 C -0.153 4.153 11 C -0.084 4.084 12 C -0.139 4.139 13 C -0.112 4.112 14 C -0.139 4.139 15 C -0.096 4.096 16 C 0.294 3.706 17 O -0.391 6.391 18 N -0.328 5.328 19 C -0.071 4.071 20 C 0.127 3.873 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.283 10.976 24.412 26.864 hybrid contribution -0.741 -0.460 -0.649 1.087 sum -3.024 10.516 23.764 26.162 Atomic orbital electron populations 1.22189 0.91523 1.04523 1.04096 1.22910 0.96527 0.97465 0.82161 0.87575 1.86710 1.75256 1.40819 1.19130 1.23764 0.76613 0.86619 0.85958 1.90719 1.45288 1.15238 1.83313 1.18800 0.76244 0.80674 0.90836 1.93140 1.85254 1.39517 1.96631 1.93135 1.28070 1.96255 1.97056 1.19725 0.98529 1.00071 0.96967 1.20950 0.99018 0.92836 0.95641 1.21159 0.97082 0.99741 0.95901 1.21378 0.94004 0.96744 0.99114 1.21143 1.00286 0.95874 0.96602 1.20987 0.94436 0.98963 0.95208 1.19648 0.80442 0.86881 0.83678 1.90722 1.44918 1.18260 1.85192 1.48082 1.65229 1.11938 1.07601 1.21852 0.99007 0.82617 1.03659 1.19391 0.96750 0.92104 0.79036 1.21373 0.94723 1.31662 1.09266 0.92393 1.24938 0.96294 0.96075 0.96717 1.69920 1.23226 1.40319 1.19686 0.86536 0.82712 0.79632 0.78417 1.20214 1.21121 1.20109 0.89008 0.91150 0.90264 0.84856 0.84953 0.85243 0.84947 0.84767 0.93338 0.89912 0.92292 0.94519 0.93504 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.19 37.15 0.34 -1.97 16 2 C 0.07 1.13 2.14 -27.89 -0.06 1.07 16 3 H 0.11 1.57 6.31 -51.93 -0.33 1.25 16 4 O -0.31 -5.32 9.30 -45.75 -0.43 -5.75 16 5 C 0.43 6.48 7.31 36.00 0.26 6.74 16 6 O -0.46 -6.92 15.46 -18.75 -0.29 -7.21 16 7 C 0.37 4.92 2.26 -29.03 -0.07 4.85 16 8 F -0.16 -2.25 16.06 2.25 0.04 -2.22 16 9 F -0.16 -2.22 16.19 2.25 0.04 -2.18 16 10 C -0.15 -1.67 4.38 -104.62 -0.46 -2.13 16 11 C -0.07 -0.63 9.37 -39.58 -0.37 -1.00 16 12 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 13 C -0.09 -0.62 10.05 -39.58 -0.40 -1.02 16 14 C -0.12 -0.88 10.05 -39.59 -0.40 -1.27 16 15 C -0.08 -0.72 9.40 -39.59 -0.37 -1.10 16 16 C 0.51 10.98 6.95 -10.99 -0.08 10.90 16 17 O -0.52 -13.52 16.13 -13.54 -0.22 -13.74 16 18 N -0.59 -12.57 2.86 -182.95 -0.52 -13.09 16 19 C 0.07 1.12 9.79 59.85 0.59 1.70 16 20 C 0.25 6.37 5.18 -5.19 -0.03 6.35 16 21 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 25 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.13 1.17 7.60 -52.49 -0.40 0.77 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.13 1.12 7.60 -52.48 -0.40 0.72 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 39 H 0.06 0.75 4.92 -51.93 -0.26 0.49 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -34.34 372.02 -6.92 -41.26 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.01 Total: -2.02 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.85 Total: 8.36 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.21 Total: -38.68 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.93 Total: -26.70 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.34 -6.92 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915586704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.548 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds