Wall clock time and date at job start Tue Mar 31 2020 23:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47123 * 2 1 4 4 C 1.34633 * 116.99842 * 179.97438 * 3 2 1 5 5 O 1.21505 * 120.00131 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99720 * 180.02562 * 4 3 2 7 7 C 1.47598 * 122.43079 * 359.71093 * 6 4 3 8 8 S 1.84336 * 102.51756 * 155.11522 * 7 6 4 9 9 C 1.84213 * 93.82676 * 33.71317 * 8 7 6 10 10 C 1.45511 * 122.42788 * 180.02562 * 6 4 3 11 11 H 1.09006 * 108.75066 * 301.87884 * 10 6 4 12 12 C 1.50700 * 108.75628 * 60.10314 * 10 6 4 13 13 O 1.21284 * 119.99934 * 12.27577 * 12 10 6 14 14 N 1.34772 * 119.99640 * 192.27220 * 12 10 6 15 15 C 1.46496 * 120.00603 * 2.27175 * 14 12 10 16 16 C 1.50701 * 109.47252 * 86.23124 * 15 14 12 17 17 H 1.08008 * 119.99524 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00065 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00127 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00120 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46816 * 89.99772 * 20 18 16 22 22 H 1.48504 * 109.46939 * 209.99822 * 20 18 16 23 23 H 1.48494 * 109.46847 * 329.99635 * 20 18 16 24 24 C 1.46508 * 119.99400 * 182.26953 * 14 12 10 25 25 C 1.52998 * 109.46805 * 85.63682 * 24 14 12 26 26 C 1.47197 * 109.47130 * 179.97438 * 25 24 14 27 27 N 9.66236 * 141.00565 * 288.03049 * 2 1 3 28 28 H 1.08998 * 109.47045 * 299.99665 * 1 2 3 29 29 H 1.09002 * 109.47269 * 59.99927 * 1 2 3 30 30 H 1.09004 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46798 * 120.00245 * 2 1 3 32 32 H 1.08998 * 109.47045 * 240.00334 * 2 1 3 33 33 H 1.09006 * 110.77854 * 273.47255 * 7 6 4 34 34 H 1.08993 * 110.78114 * 36.90565 * 7 6 4 35 35 H 1.08996 * 111.05130 * 209.57263 * 9 8 7 36 36 H 1.09006 * 111.08841 * 85.61437 * 9 8 7 37 37 H 1.08996 * 109.47019 * 206.23589 * 15 14 12 38 38 H 1.09000 * 109.46620 * 326.23501 * 15 14 12 39 39 H 0.96998 * 120.00607 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47168 * 205.63330 * 24 14 12 41 41 H 1.09000 * 109.47252 * 325.64031 * 24 14 12 42 42 H 1.08995 * 109.47682 * 299.99830 * 25 24 14 43 43 H 1.09001 * 109.47454 * 60.00201 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5453 0.0005 5 8 4.0889 0.5817 0.0015 6 7 3.8639 2.7908 0.0011 7 6 3.0152 3.9984 -0.0051 8 16 4.1173 5.2651 0.7556 9 6 5.6501 4.5469 0.0289 10 6 5.2971 3.0424 0.0011 11 1 5.7365 2.5657 0.8774 12 6 5.8973 2.4262 -1.2363 13 8 5.1765 2.0391 -2.1316 14 7 7.2349 2.3055 -1.3479 15 6 8.1031 2.7273 -0.2459 16 6 8.2544 1.5945 0.7364 17 1 7.7542 0.6541 0.5573 18 6 9.0313 1.7585 1.8634 19 7 9.1639 0.7697 2.7204 20 14 9.8959 3.3852 2.1734 21 1 9.0059 4.2767 2.9598 22 1 11.1494 3.1429 2.9318 23 1 10.2195 4.0289 0.8749 24 6 7.8208 1.7522 -2.5715 25 6 7.9966 2.8687 -3.6027 26 6 8.5857 2.3130 -4.8318 27 7 9.0397 1.8819 -5.7814 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.7475 4.2776 -1.0243 34 1 2.1231 3.8472 0.6025 35 1 6.5122 4.7352 0.6687 36 1 5.8222 4.9270 -0.9781 37 1 9.0822 3.0007 -0.6390 38 1 7.6603 3.5872 0.2567 39 1 9.7101 0.8851 3.5135 40 1 8.7916 1.3126 -2.3429 41 1 7.1605 0.9849 -2.9757 42 1 7.0258 3.3084 -3.8313 43 1 8.6568 3.6360 -3.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930478378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:07 Heat of formation + Delta-G solvation = -61.039374 kcal Electronic energy + Delta-G solvation = -28696.714654 eV Core-core repulsion = 24676.766300 eV Total energy + Delta-G solvation = -4019.948354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72437 -39.48769 -37.25546 -36.53783 -35.68429 -35.40153 -32.96657 -32.26951 -31.52410 -30.41367 -27.96833 -27.40756 -24.97050 -24.04910 -22.98676 -22.35290 -20.77792 -19.00001 -18.01171 -17.74235 -17.43669 -17.12154 -16.95230 -16.33318 -16.07348 -15.52031 -15.17809 -14.75788 -14.53451 -14.38040 -14.17722 -13.75386 -13.67533 -13.57785 -13.16104 -13.02487 -12.80282 -12.70863 -12.46153 -12.44373 -12.34843 -12.10300 -11.83730 -11.72620 -11.59872 -11.56551 -11.19760 -10.90721 -10.83812 -10.68178 -10.43455 -10.40712 -10.27048 -9.70765 -9.50374 -8.80470 -8.72270 -8.07052 -7.97514 -6.27446 -4.31479 1.49170 1.84038 1.96639 2.72694 2.84033 2.92035 3.09311 3.09683 3.14287 3.20591 3.45286 3.80190 4.17665 4.19329 4.38762 4.74944 4.90802 4.92573 4.97392 5.00103 5.04177 5.14937 5.18867 5.20365 5.26873 5.32910 5.45994 5.50479 5.71048 5.79174 5.85633 5.90391 6.08251 6.15672 6.21070 6.37071 6.43116 7.03985 7.25886 7.30570 7.60780 7.83584 8.26982 8.41946 8.59983 8.83991 9.28844 10.84964 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007915 B = 0.004835 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.758351 B = 5789.383643 C = 7037.838864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 O -0.371 6.371 4 C 0.670 3.330 5 O -0.537 6.537 6 N -0.583 5.583 7 C 0.164 3.836 8 S -0.265 6.265 9 C -0.060 4.060 10 C 0.131 3.869 11 H 0.138 0.862 12 C 0.522 3.478 13 O -0.545 6.545 14 N -0.585 5.585 15 C 0.200 3.800 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.080 3.920 19 N -0.883 5.883 20 Si 0.864 3.136 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.128 3.872 25 C -0.045 4.045 26 C 0.219 3.781 27 N -0.445 5.445 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.268 0.732 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 8.381 -3.868 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.007 3.993 3 O -0.286 6.286 4 C 0.423 3.577 5 O -0.423 6.423 6 N -0.325 5.325 7 C -0.070 4.070 8 S -0.039 6.039 9 C -0.208 4.208 10 C 0.023 3.977 11 H 0.156 0.844 12 C 0.307 3.693 13 O -0.423 6.423 14 N -0.316 5.316 15 C 0.079 3.921 16 C -0.586 4.586 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.520 5.520 20 Si 0.690 3.310 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.186 1.186 24 C 0.002 3.998 25 C -0.087 4.087 26 C -0.099 4.099 27 N -0.123 5.123 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.092 8.055 -4.814 15.306 hybrid contribution 0.708 -0.100 0.118 0.725 sum -11.384 7.955 -4.697 14.661 Atomic orbital electron populations 1.21813 0.92696 1.02929 1.03324 1.22943 0.94503 0.78754 1.03076 1.86160 1.21890 1.33245 1.87320 1.17386 0.81216 0.82806 0.76289 1.91098 1.59451 1.38404 1.53308 1.46618 1.04848 1.03203 1.77844 1.24232 0.95455 0.83734 1.03529 1.88340 1.05385 1.41263 1.68891 1.24648 0.98323 0.92237 1.05599 1.21186 0.79345 0.95873 1.01274 0.84439 1.20345 0.82510 0.78941 0.87481 1.90637 1.60295 1.49874 1.41445 1.47758 1.05410 1.61840 1.16603 1.20099 0.90223 0.96433 0.85328 1.21379 1.31823 1.00255 1.05174 0.89885 1.24884 0.95663 0.96356 0.95588 1.69889 1.38740 1.31542 1.11803 0.87052 0.80263 0.84457 0.79262 1.19586 1.20735 1.18641 1.21152 1.00778 0.94101 0.83719 1.19773 1.01972 0.99969 0.86950 1.29085 0.93044 0.93431 0.94361 1.81252 1.10080 1.08970 1.11984 0.91558 0.91581 0.90099 0.91033 0.91069 0.88478 0.86245 0.84261 0.87564 0.93976 0.95191 0.92224 0.88815 0.89778 0.87319 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.86 16 2 C 0.08 1.01 6.19 37.16 0.23 1.24 16 3 O -0.37 -5.51 9.46 -40.30 -0.38 -5.89 16 4 C 0.67 12.18 7.59 54.06 0.41 12.59 16 5 O -0.54 -11.95 15.17 -23.88 -0.36 -12.31 16 6 N -0.58 -9.38 2.69 -174.78 -0.47 -9.85 16 7 C 0.16 1.98 7.45 60.45 0.45 2.43 16 8 S -0.27 -3.28 23.44 -107.50 -2.52 -5.80 16 9 C -0.06 -0.76 5.98 37.98 0.23 -0.54 16 10 C 0.13 2.18 2.11 -68.80 -0.15 2.04 16 11 H 0.14 2.71 7.09 -51.93 -0.37 2.34 16 12 C 0.52 9.50 5.89 -10.99 -0.06 9.43 16 13 O -0.54 -11.00 14.97 -5.81 -0.09 -11.09 16 14 N -0.59 -10.13 2.47 -175.06 -0.43 -10.56 16 15 C 0.20 3.72 3.83 -5.20 -0.02 3.70 16 16 C -0.55 -13.36 9.26 -34.44 -0.32 -13.67 16 17 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 18 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.88 -24.77 13.96 55.43 0.77 -24.00 16 20 Si 0.86 17.97 27.47 -169.99 -4.67 13.30 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 24 C 0.13 1.92 5.32 -4.04 -0.02 1.90 16 25 C -0.05 -0.52 6.00 -29.52 -0.18 -0.69 16 26 C 0.22 2.94 15.44 -20.72 -0.32 2.62 16 27 N -0.45 -7.12 18.55 42.21 0.78 -6.34 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.12 1.25 7.86 -51.93 -0.41 0.84 16 35 H 0.14 1.71 6.42 -51.93 -0.33 1.38 16 36 H 0.11 1.16 7.85 -51.93 -0.41 0.75 16 37 H 0.04 0.74 7.10 -51.93 -0.37 0.37 16 38 H 0.03 0.51 3.76 -51.93 -0.20 0.32 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.09 1.40 8.04 -51.93 -0.42 0.99 16 41 H 0.08 1.39 7.53 -51.93 -0.39 1.00 16 42 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -33.15 376.90 -7.01 -40.17 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.86 Total: 4.58 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 0.54 Total: 22.11 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.65 Total: -50.74 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.83 Total: -29.29 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.67 Total: 13.30 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.52 Total: -5.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.15 -7.01 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.872 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds