Wall clock time and date at job start Tue Mar 31 2020 23:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47123 * 2 1 4 4 C 1.34633 * 116.99842 * 179.97438 * 3 2 1 5 5 O 1.21505 * 120.00131 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99720 * 180.02562 * 4 3 2 7 7 C 1.47598 * 122.43079 * 359.71093 * 6 4 3 8 8 S 1.84336 * 102.51756 * 155.11522 * 7 6 4 9 9 C 1.84213 * 93.82676 * 33.71317 * 8 7 6 10 10 C 1.45511 * 122.42788 * 180.02562 * 6 4 3 11 11 H 1.09006 * 108.75066 * 301.87884 * 10 6 4 12 12 C 1.50700 * 108.75628 * 60.10314 * 10 6 4 13 13 O 1.21284 * 119.99934 * 12.27577 * 12 10 6 14 14 N 1.34772 * 119.99640 * 192.27220 * 12 10 6 15 15 C 1.46496 * 120.00603 * 2.27175 * 14 12 10 16 16 C 1.50701 * 109.47252 * 86.23124 * 15 14 12 17 17 H 1.08008 * 119.99524 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00065 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00127 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00120 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46816 * 89.99772 * 20 18 16 22 22 H 1.48504 * 109.46939 * 209.99822 * 20 18 16 23 23 H 1.48494 * 109.46847 * 329.99635 * 20 18 16 24 24 C 1.46508 * 119.99400 * 182.26953 * 14 12 10 25 25 C 1.52998 * 109.46805 * 85.63682 * 24 14 12 26 26 C 1.47197 * 109.47130 * 179.97438 * 25 24 14 27 27 N 9.66236 * 141.00565 * 288.03049 * 2 1 3 28 28 H 1.08998 * 109.47045 * 299.99665 * 1 2 3 29 29 H 1.09002 * 109.47269 * 59.99927 * 1 2 3 30 30 H 1.09004 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46798 * 120.00245 * 2 1 3 32 32 H 1.08998 * 109.47045 * 240.00334 * 2 1 3 33 33 H 1.09006 * 110.77854 * 273.47255 * 7 6 4 34 34 H 1.08993 * 110.78114 * 36.90565 * 7 6 4 35 35 H 1.08996 * 111.05130 * 209.57263 * 9 8 7 36 36 H 1.09006 * 111.08841 * 85.61437 * 9 8 7 37 37 H 1.08996 * 109.47019 * 206.23589 * 15 14 12 38 38 H 1.09000 * 109.46620 * 326.23501 * 15 14 12 39 39 H 0.96998 * 120.00607 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47168 * 205.63330 * 24 14 12 41 41 H 1.09000 * 109.47252 * 325.64031 * 24 14 12 42 42 H 1.08995 * 109.47682 * 299.99830 * 25 24 14 43 43 H 1.09001 * 109.47454 * 60.00201 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5453 0.0005 5 8 4.0889 0.5817 0.0015 6 7 3.8639 2.7908 0.0011 7 6 3.0152 3.9984 -0.0051 8 16 4.1173 5.2651 0.7556 9 6 5.6501 4.5469 0.0289 10 6 5.2971 3.0424 0.0011 11 1 5.7365 2.5657 0.8774 12 6 5.8973 2.4262 -1.2363 13 8 5.1765 2.0391 -2.1316 14 7 7.2349 2.3055 -1.3479 15 6 8.1031 2.7273 -0.2459 16 6 8.2544 1.5945 0.7364 17 1 7.7542 0.6541 0.5573 18 6 9.0313 1.7585 1.8634 19 7 9.1639 0.7697 2.7204 20 14 9.8959 3.3852 2.1734 21 1 9.0059 4.2767 2.9598 22 1 11.1494 3.1429 2.9318 23 1 10.2195 4.0289 0.8749 24 6 7.8208 1.7522 -2.5715 25 6 7.9966 2.8687 -3.6027 26 6 8.5857 2.3130 -4.8318 27 7 9.0397 1.8819 -5.7814 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.7475 4.2776 -1.0243 34 1 2.1231 3.8472 0.6025 35 1 6.5122 4.7352 0.6687 36 1 5.8222 4.9270 -0.9781 37 1 9.0822 3.0007 -0.6390 38 1 7.6603 3.5872 0.2567 39 1 9.7101 0.8851 3.5135 40 1 8.7916 1.3126 -2.3429 41 1 7.1605 0.9849 -2.9757 42 1 7.0258 3.3084 -3.8313 43 1 8.6568 3.6360 -3.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930478378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:06 Heat of formation + Delta-G solvation = -82.987591 kcal Electronic energy + Delta-G solvation = -28697.666400 eV Core-core repulsion = 24676.766300 eV Total energy + Delta-G solvation = -4020.900100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07697 -40.85477 -38.45668 -37.74665 -37.09554 -36.86534 -34.66936 -33.55477 -32.55973 -31.55866 -29.63549 -28.51055 -26.14607 -25.24422 -24.51095 -23.53784 -22.05974 -20.32387 -19.33151 -19.17928 -18.76348 -18.46752 -18.43207 -17.59820 -17.27743 -16.80545 -16.32931 -16.14906 -15.90868 -15.61886 -15.29012 -14.98189 -14.92468 -14.62845 -14.54424 -14.36560 -14.18350 -13.76092 -13.66130 -13.57900 -13.52267 -13.21671 -13.06304 -12.92631 -12.87864 -12.69258 -12.54895 -12.29572 -12.16506 -11.96000 -11.84224 -11.69793 -11.60139 -11.57157 -10.83589 -10.69176 -10.05827 -9.54964 -8.92373 -8.21588 -6.31392 0.50022 0.73509 0.83955 1.48195 1.50390 1.50932 1.57600 1.61197 1.72617 1.77836 2.18987 2.42956 2.66964 3.08754 3.13982 3.22133 3.48187 3.90207 3.98787 4.03491 4.09213 4.10037 4.10484 4.25728 4.32205 4.33310 4.46366 4.52482 4.66402 4.73996 4.80976 4.86232 4.92486 4.95881 5.04577 5.08229 5.30520 5.49877 5.62210 5.94105 6.20185 6.51248 6.55482 6.77908 7.04136 7.17750 7.35190 8.95701 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007915 B = 0.004835 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.758351 B = 5789.383643 C = 7037.838864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 O -0.360 6.360 4 C 0.664 3.336 5 O -0.593 6.593 6 N -0.583 5.583 7 C 0.161 3.839 8 S -0.250 6.250 9 C -0.057 4.057 10 C 0.130 3.870 11 H 0.099 0.901 12 C 0.519 3.481 13 O -0.568 6.568 14 N -0.585 5.585 15 C 0.206 3.794 16 C -0.544 4.544 17 H 0.015 0.985 18 C 0.013 3.987 19 N -0.950 5.950 20 Si 0.937 3.063 21 H -0.256 1.256 22 H -0.297 1.297 23 H -0.213 1.213 24 C 0.123 3.877 25 C -0.027 4.027 26 C 0.243 3.757 27 N -0.492 5.492 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 12.595 -4.610 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 O -0.274 6.274 4 C 0.418 3.582 5 O -0.482 6.482 6 N -0.325 5.325 7 C -0.071 4.071 8 S -0.023 6.023 9 C -0.205 4.205 10 C 0.021 3.979 11 H 0.117 0.883 12 C 0.305 3.695 13 O -0.448 6.448 14 N -0.315 5.315 15 C 0.085 3.915 16 C -0.583 4.583 17 H 0.034 0.966 18 C -0.185 4.185 19 N -0.590 5.590 20 Si 0.758 3.242 21 H -0.180 1.180 22 H -0.223 1.223 23 H -0.135 1.135 24 C -0.002 4.002 25 C -0.068 4.068 26 C -0.074 4.074 27 N -0.170 5.170 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.141 0.859 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.658 12.316 -5.598 18.527 hybrid contribution 0.734 -1.593 0.387 1.797 sum -11.924 10.723 -5.210 16.861 Atomic orbital electron populations 1.21820 0.88932 1.04671 1.04103 1.23273 0.97261 0.77608 1.02097 1.86192 1.19843 1.34652 1.86760 1.17738 0.81865 0.82997 0.75635 1.91061 1.60849 1.40422 1.55857 1.46762 1.05301 1.03727 1.76738 1.24538 0.95427 0.81951 1.05221 1.88331 1.04666 1.40229 1.69105 1.24720 0.99025 0.89033 1.07729 1.21146 0.79636 0.98403 0.98665 0.88284 1.20643 0.82623 0.78584 0.87639 1.90617 1.60773 1.50867 1.42532 1.47745 1.05202 1.61627 1.16910 1.20049 0.92100 0.94798 0.84597 1.21557 1.30370 0.99608 1.06736 0.96630 1.25950 0.96605 1.00957 0.94967 1.70113 1.40786 1.35094 1.12959 0.85892 0.78050 0.78987 0.81269 1.18028 1.22322 1.13474 1.21204 0.99823 0.95199 0.83977 1.19737 1.03519 0.98834 0.84698 1.29356 0.91780 0.92229 0.94079 1.81282 1.11907 1.10226 1.13612 0.90644 0.90826 0.87848 0.91956 0.92339 0.86462 0.84617 0.83196 0.84633 0.90971 0.92136 0.92554 0.89039 0.92221 0.85901 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.34 16 2 C 0.07 1.81 6.19 71.98 0.45 2.26 16 3 O -0.36 -10.77 9.46 -55.42 -0.52 -11.29 16 4 C 0.66 24.90 7.59 129.79 0.99 25.89 16 5 O -0.59 -28.16 15.17 24.23 0.37 -27.80 16 6 N -0.58 -18.57 2.69 -937.30 -2.52 -21.09 16 7 C 0.16 3.51 7.45 127.56 0.95 4.46 16 8 S -0.25 -5.39 23.44 -56.49 -1.32 -6.71 16 9 C -0.06 -1.27 5.98 72.51 0.43 -0.84 16 10 C 0.13 4.25 2.11 44.96 0.10 4.35 16 11 H 0.10 4.03 7.09 -2.38 -0.02 4.02 16 12 C 0.52 18.73 5.89 87.66 0.52 19.25 16 13 O -0.57 -23.07 14.97 7.82 0.12 -22.95 16 14 N -0.58 -19.67 2.47 -826.16 -2.04 -21.71 16 15 C 0.21 7.22 3.83 85.63 0.33 7.55 16 16 C -0.54 -27.30 9.26 25.60 0.24 -27.06 16 17 H 0.02 0.96 8.06 -2.91 -0.02 0.94 16 18 C 0.01 0.69 5.47 84.65 0.46 1.15 16 19 N -0.95 -56.06 13.96 21.44 0.30 -55.77 16 20 Si 0.94 35.49 27.47 68.60 1.88 37.38 16 21 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 22 H -0.30 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.21 -6.38 6.54 99.48 0.65 -5.73 16 24 C 0.12 3.59 5.32 86.38 0.46 4.05 16 25 C -0.03 -0.53 6.00 28.79 0.17 -0.36 16 26 C 0.24 6.06 15.44 89.43 1.38 7.44 16 27 N -0.49 -15.27 18.55 20.02 0.37 -14.90 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.14 2.51 7.86 -2.39 -0.02 2.49 16 35 H 0.15 3.03 6.42 -2.39 -0.02 3.01 16 36 H 0.14 2.29 7.85 -2.38 -0.02 2.27 16 37 H 0.07 2.18 7.10 -2.39 -0.02 2.17 16 38 H 0.06 1.82 3.76 -2.39 -0.01 1.81 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 40 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 41 H 0.06 2.03 7.53 -2.39 -0.02 2.02 16 42 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -80.37 376.90 4.82 -75.55 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.98 Total: 22.50 kcal Atomic # 6 Polarization: 39.58 SS G_CDS: 7.21 Total: 46.79 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -3.89 Total: -113.46 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -0.04 Total: -62.04 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 1.88 Total: 37.38 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -1.32 Total: -6.71 kcal Total: -80.37 4.82 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -80.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds