Wall clock time and date at job start Tue Mar 31 2020 23:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47345 * 2 1 4 4 C 1.34628 * 117.00244 * 180.02562 * 3 2 1 5 5 O 1.21515 * 120.00056 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00487 * 179.97438 * 4 3 2 7 7 C 1.47609 * 122.42434 * 0.02593 * 6 4 3 8 8 S 1.84075 * 102.63292 * 204.80983 * 7 6 4 9 9 C 1.84204 * 93.91308 * 326.56390 * 8 7 6 10 10 C 1.45492 * 122.43340 * 179.73538 * 6 4 3 11 11 H 1.09010 * 108.75336 * 57.95257 * 10 6 4 12 12 C 1.50704 * 108.75641 * 299.89491 * 10 6 4 13 13 O 1.21277 * 119.99686 * 332.68282 * 12 10 6 14 14 N 1.34779 * 120.00000 * 152.68601 * 12 10 6 15 15 C 1.46492 * 119.99947 * 5.15629 * 14 12 10 16 16 C 1.50700 * 109.47474 * 89.99947 * 15 14 12 17 17 H 1.07990 * 120.00055 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99887 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99676 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46950 * 89.99615 * 20 18 16 22 22 H 1.48503 * 109.46428 * 209.99437 * 20 18 16 23 23 H 1.48493 * 109.47234 * 329.99362 * 20 18 16 24 24 C 1.46498 * 119.99783 * 185.14803 * 14 12 10 25 25 C 1.53010 * 109.46678 * 94.51072 * 24 14 12 26 26 C 1.47203 * 109.46839 * 175.09894 * 25 24 14 27 27 N 8.49240 * 148.71245 * 108.84536 * 2 1 3 28 28 H 1.08993 * 109.47314 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46997 * 300.00367 * 1 2 3 30 30 H 1.09005 * 109.46940 * 59.99869 * 1 2 3 31 31 H 1.09005 * 109.46747 * 239.99850 * 2 1 3 32 32 H 1.08997 * 109.46986 * 120.00458 * 2 1 3 33 33 H 1.09004 * 110.77451 * 323.09665 * 7 6 4 34 34 H 1.09002 * 110.77711 * 86.52384 * 7 6 4 35 35 H 1.08999 * 111.05462 * 150.27019 * 9 8 7 36 36 H 1.09002 * 111.05389 * 274.20927 * 9 8 7 37 37 H 1.09005 * 109.46777 * 210.00050 * 15 14 12 38 38 H 1.09005 * 109.47682 * 329.99519 * 15 14 12 39 39 H 0.97001 * 120.00000 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47129 * 214.50551 * 24 14 12 41 41 H 1.08995 * 109.47068 * 334.51323 * 24 14 12 42 42 H 1.09002 * 109.46799 * 295.09776 * 25 24 14 43 43 H 1.08993 * 109.46871 * 55.09936 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8640 2.7908 -0.0011 7 6 3.0153 3.9984 -0.0006 8 16 4.1171 5.2652 -0.7553 9 6 5.6502 4.5468 -0.0294 10 6 5.2970 3.0424 0.0040 11 1 5.7403 2.5617 -0.8682 12 6 5.8925 2.4282 1.2447 13 8 5.2134 2.2936 2.2405 14 7 7.1796 2.0286 1.2477 15 6 8.0314 2.2931 0.0856 16 6 8.7087 3.6289 0.2528 17 1 8.5230 4.2217 1.1361 18 6 9.5649 4.0947 -0.7225 19 7 9.7907 3.3729 -1.7985 20 14 10.4050 5.7501 -0.5149 21 1 11.7017 5.5629 0.1842 22 1 10.6450 6.3542 -1.8501 23 1 9.5360 6.6492 0.2862 24 6 7.7269 1.3298 2.4132 25 6 7.6281 -0.1814 2.1946 26 6 8.2833 -0.8824 3.3109 27 7 8.7874 -1.4246 4.1740 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1257 3.8461 -0.6118 34 1 2.7432 4.2794 1.0169 35 1 6.5120 4.7352 -0.6696 36 1 5.8224 4.9275 0.9773 37 1 8.7861 1.5109 0.0027 38 1 7.4208 2.3059 -0.8172 39 1 10.3927 3.7008 -2.4848 40 1 8.7717 1.6100 2.5473 41 1 7.1597 1.6062 3.3020 42 1 6.5791 -0.4738 2.1474 43 1 8.1216 -0.4461 1.2595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930478379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:09 Heat of formation + Delta-G solvation = -70.620196 kcal Electronic energy + Delta-G solvation = -28651.853092 eV Core-core repulsion = 24631.489283 eV Total energy + Delta-G solvation = -4020.363809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75956 -39.44921 -37.23558 -36.50007 -35.76157 -35.27806 -33.03932 -32.17936 -31.45427 -30.26219 -27.48316 -27.30083 -24.93090 -23.92208 -23.24409 -22.52839 -20.83620 -18.92061 -18.07642 -17.55663 -17.38516 -17.15481 -16.58384 -16.42489 -16.05077 -15.37517 -15.09379 -14.67538 -14.60895 -14.27923 -14.15818 -13.77849 -13.54060 -13.43417 -13.31848 -12.90879 -12.66401 -12.47407 -12.30743 -12.20183 -12.17353 -12.03469 -11.78957 -11.70246 -11.63609 -11.38572 -11.13373 -10.89545 -10.84303 -10.66879 -10.55787 -10.39535 -10.24629 -9.91963 -9.47626 -8.82512 -8.59207 -7.99918 -7.82154 -6.33502 -4.42543 1.65676 1.91538 2.05954 2.79997 2.91005 2.96142 3.11911 3.14559 3.23667 3.25691 3.50581 3.80775 4.20193 4.34989 4.55124 4.81165 4.84201 4.93830 4.99882 5.05569 5.16016 5.21222 5.26108 5.32549 5.34751 5.41210 5.61915 5.71795 5.73296 5.78453 5.84890 6.04858 6.18577 6.24424 6.28206 6.51487 6.99857 7.17068 7.27974 7.60174 7.72428 7.86038 8.04026 8.27019 8.58384 8.73730 9.26137 10.72652 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008513 B = 0.004976 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.278511 B = 5625.558012 C = 8132.102798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 O -0.368 6.368 4 C 0.671 3.329 5 O -0.555 6.555 6 N -0.581 5.581 7 C 0.161 3.839 8 S -0.274 6.274 9 C -0.040 4.040 10 C 0.136 3.864 11 H 0.121 0.879 12 C 0.521 3.479 13 O -0.557 6.557 14 N -0.587 5.587 15 C 0.231 3.769 16 C -0.547 4.547 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.883 5.883 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.127 3.873 25 C -0.045 4.045 26 C 0.222 3.778 27 N -0.451 5.451 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -1.408 -0.309 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 O -0.283 6.283 4 C 0.424 3.576 5 O -0.442 6.442 6 N -0.323 5.323 7 C -0.073 4.073 8 S -0.048 6.048 9 C -0.189 4.189 10 C 0.029 3.971 11 H 0.138 0.862 12 C 0.306 3.694 13 O -0.436 6.436 14 N -0.317 5.317 15 C 0.111 3.889 16 C -0.585 4.585 17 H 0.083 0.917 18 C -0.134 4.134 19 N -0.520 5.520 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.195 1.195 24 C 0.002 3.998 25 C -0.087 4.087 26 C -0.096 4.096 27 N -0.129 5.129 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.986 -1.691 0.556 14.098 hybrid contribution 0.722 0.090 0.307 0.789 sum -13.264 -1.601 0.863 13.388 Atomic orbital electron populations 1.21820 0.92641 1.02958 1.03466 1.22949 0.94639 0.78728 1.02928 1.86195 1.21781 1.33226 1.87101 1.17443 0.81242 0.82859 0.76048 1.91012 1.59689 1.38689 1.54820 1.46843 1.05299 1.03228 1.76893 1.24194 0.95411 0.83889 1.03779 1.88302 1.06248 1.41390 1.68818 1.24625 0.97464 0.90536 1.06235 1.21182 0.78560 0.97310 1.00049 0.86161 1.20317 0.82262 0.78072 0.88735 1.90620 1.60998 1.57379 1.34599 1.48063 1.10102 1.54655 1.18854 1.19616 0.89853 0.97394 0.81989 1.21460 1.27597 1.03541 1.05917 0.91704 1.24919 0.96013 0.97611 0.94896 1.69906 1.35856 1.37668 1.08606 0.86586 0.80231 0.83582 0.77741 1.20432 1.20954 1.19530 1.21120 1.00846 0.87906 0.89975 1.19768 1.01331 0.95338 0.92240 1.29169 0.92996 0.93304 0.94115 1.81216 1.10313 1.10049 1.11310 0.90077 0.91485 0.91513 0.91092 0.91080 0.86399 0.88500 0.82814 0.87754 0.93940 0.94078 0.92232 0.89292 0.89741 0.87256 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.71 16 2 C 0.08 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -5.02 9.46 -40.29 -0.38 -5.40 16 4 C 0.67 11.12 7.88 54.06 0.43 11.54 16 5 O -0.55 -10.53 15.48 -19.28 -0.30 -10.83 16 6 N -0.58 -9.16 2.67 -174.91 -0.47 -9.63 16 7 C 0.16 2.06 7.43 60.45 0.45 2.51 16 8 S -0.27 -3.86 23.44 -107.50 -2.52 -6.38 16 9 C -0.04 -0.64 6.20 37.98 0.24 -0.40 16 10 C 0.14 2.32 2.17 -68.80 -0.15 2.17 16 11 H 0.12 2.16 6.13 -51.92 -0.32 1.85 16 12 C 0.52 9.74 5.50 -10.98 -0.06 9.68 16 13 O -0.56 -11.47 15.75 5.56 0.09 -11.38 16 14 N -0.59 -10.65 2.46 -175.06 -0.43 -11.08 16 15 C 0.23 4.67 4.93 -5.20 -0.03 4.64 16 16 C -0.55 -12.09 7.71 -34.44 -0.27 -12.35 16 17 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 18 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.88 -21.90 13.29 55.43 0.74 -21.16 16 20 Si 0.89 18.64 29.54 -169.99 -5.02 13.62 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C 0.13 2.02 5.45 -4.04 -0.02 2.00 16 25 C -0.05 -0.63 6.03 -29.51 -0.18 -0.81 16 26 C 0.22 3.33 15.44 -20.72 -0.32 3.01 16 27 N -0.45 -7.72 18.54 42.20 0.78 -6.94 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 1.27 7.86 -51.93 -0.41 0.86 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.15 2.62 7.13 -51.93 -0.37 2.25 16 36 H 0.10 1.66 7.84 -51.93 -0.41 1.25 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.04 0.87 5.79 -51.93 -0.30 0.57 16 39 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 40 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.08 1.38 7.23 -51.93 -0.38 1.01 16 42 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -28.65 382.04 -7.09 -35.74 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.95 Total: 3.76 kcal Atomic # 6 Polarization: 23.32 SS G_CDS: 0.61 Total: 23.92 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.62 Total: -48.81 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.59 Total: -27.61 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.52 Total: -6.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.65 -7.09 -35.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.877 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds