Wall clock time and date at job start Tue Mar 31 2020 23:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.46931 * 2 1 4 4 C 1.34231 * 116.99701 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99499 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47203 * 299.99979 * 6 4 3 8 8 C 1.53001 * 109.47544 * 60.00112 * 6 4 3 9 9 C 1.50693 * 109.47605 * 184.99610 * 8 6 4 10 10 C 1.38263 * 119.99161 * 89.99509 * 9 8 6 11 11 C 1.38227 * 120.02488 * 179.72424 * 10 9 8 12 12 C 1.38234 * 120.01430 * 0.28273 * 11 10 9 13 13 C 1.38334 * 119.98337 * 359.97438 * 12 11 10 14 14 Cl 1.73599 * 120.00894 * 179.97438 * 13 12 11 15 15 C 1.38190 * 119.99673 * 270.27943 * 9 8 6 16 16 N 1.46901 * 109.46936 * 180.02562 * 6 4 3 17 17 C 1.46901 * 111.00273 * 84.99641 * 16 6 4 18 18 C 1.53001 * 109.47204 * 180.02562 * 17 16 6 19 19 H 1.08998 * 109.46776 * 59.99974 * 18 17 16 20 20 O 1.42902 * 109.47008 * 300.00417 * 18 17 16 21 21 C 1.50698 * 109.46893 * 180.02562 * 18 17 16 22 22 H 1.07998 * 120.00342 * 359.97438 * 21 18 17 23 23 C 1.37880 * 119.99481 * 179.97438 * 21 18 17 24 24 N 1.31522 * 119.99541 * 179.97438 * 23 21 18 25 25 Si 1.86796 * 120.00466 * 0.02562 * 23 21 18 26 26 H 1.48504 * 109.47327 * 89.99632 * 25 23 21 27 27 H 1.48502 * 109.47183 * 209.99764 * 25 23 21 28 28 H 1.48507 * 109.47054 * 329.99704 * 25 23 21 29 29 H 1.08993 * 109.47330 * 299.99826 * 1 2 3 30 30 H 1.09000 * 109.46615 * 60.00094 * 1 2 3 31 31 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46810 * 240.00156 * 2 1 3 33 33 H 1.08995 * 109.46952 * 120.00240 * 2 1 3 34 34 H 1.08998 * 109.46818 * 64.99627 * 8 6 4 35 35 H 1.09001 * 109.47102 * 305.00076 * 8 6 4 36 36 H 1.08002 * 119.98986 * 0.02562 * 10 9 8 37 37 H 1.08002 * 119.98919 * 180.30242 * 11 10 9 38 38 H 1.07993 * 120.00600 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.00565 * 359.97438 * 15 9 8 40 40 H 1.00903 * 111.00222 * 208.95499 * 16 6 4 41 41 H 1.08997 * 109.47054 * 300.00383 * 17 16 6 42 42 H 1.09005 * 109.46648 * 60.00521 * 17 16 6 43 43 H 0.96707 * 113.99909 * 299.99873 * 20 18 17 44 44 H 0.96996 * 119.99376 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5850 3.4699 -0.8888 8 6 3.4487 3.6841 1.2504 9 6 3.9228 5.1133 1.1907 10 6 3.1321 6.0795 0.5966 11 6 3.5638 7.3917 0.5466 12 6 4.7890 7.7376 1.0853 13 6 5.5828 6.7703 1.6751 14 17 7.1218 7.2038 2.3512 15 6 5.1503 5.4568 1.7245 16 7 5.3877 2.8606 0.0010 17 6 5.9071 2.7143 -1.3652 18 6 7.4347 2.6372 -1.3246 19 1 7.7393 1.7786 -0.7261 20 8 7.9566 3.8331 -0.7420 21 6 7.9675 2.4877 -2.7263 22 1 7.2850 2.4509 -3.5624 23 6 9.3265 2.3979 -2.9411 24 7 9.7915 2.2669 -4.1644 25 14 10.5071 2.4608 -1.4949 26 1 10.7468 1.0845 -0.9913 27 1 11.7940 3.0592 -1.9321 28 1 9.9189 3.2889 -0.4115 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8584 3.2022 2.1381 35 1 2.3598 3.6641 1.2960 36 1 2.1747 5.8098 0.1759 37 1 2.9436 8.1468 0.0867 38 1 5.1263 8.7627 1.0457 39 1 5.7696 4.7012 2.1848 40 1 5.7920 3.6646 0.4574 41 1 5.5093 1.8019 -1.8094 42 1 5.6021 3.5727 -1.9637 43 1 7.7243 4.6390 -1.2234 44 1 10.7476 2.2034 -4.3155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931398344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:50 Heat of formation + Delta-G solvation = -119.128162 kcal Electronic energy + Delta-G solvation = -27857.225727 eV Core-core repulsion = 23800.421998 eV Total energy + Delta-G solvation = -4056.803730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56294 -39.62152 -37.38145 -36.53732 -36.29218 -35.25123 -32.46017 -32.20493 -31.85376 -30.94605 -29.62419 -27.66544 -25.23195 -24.13566 -22.99328 -22.72514 -21.53814 -20.51687 -20.31642 -17.69650 -17.32359 -17.22219 -16.49575 -16.23541 -15.81581 -15.71766 -15.27143 -14.86997 -14.50038 -14.25640 -13.99234 -13.95431 -13.85486 -13.49275 -13.31757 -13.06257 -12.88779 -12.55494 -12.34423 -12.19061 -11.94800 -11.77912 -11.61982 -11.58979 -11.48779 -11.36927 -11.10211 -10.92078 -10.78756 -10.54537 -10.32396 -10.26250 -9.90419 -9.10943 -8.99147 -8.83195 -8.58775 -8.28227 -8.10157 -6.08700 -4.19789 0.95155 1.04627 2.06203 2.39072 2.61314 3.41458 3.45714 3.54082 3.81078 4.30719 4.40910 4.59331 4.61494 4.76599 4.77922 4.82116 4.86044 4.91760 5.02432 5.07269 5.13154 5.16726 5.25452 5.34066 5.51491 5.56467 5.59464 5.69292 5.75683 5.77460 5.89401 6.04893 6.06686 6.10109 6.14217 6.27760 6.48600 6.58988 6.67979 7.12358 7.44738 7.59272 7.78990 7.98650 8.31681 8.85911 9.04001 9.56222 11.01900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.006462 B = 0.005091 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4331.887184 B = 5498.623146 C = 9030.975544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.459 3.541 5 O -0.473 6.473 6 C 0.104 3.896 7 H 0.081 0.919 8 C -0.079 4.079 9 C -0.076 4.076 10 C -0.110 4.110 11 C -0.106 4.106 12 C -0.113 4.113 13 C -0.026 4.026 14 Cl -0.065 7.065 15 C -0.103 4.103 16 N -0.670 5.670 17 C 0.046 3.954 18 C 0.198 3.802 19 H 0.065 0.935 20 O -0.579 6.579 21 C -0.563 4.563 22 H 0.070 0.930 23 C 0.084 3.916 24 N -0.894 5.894 25 Si 0.872 3.128 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.215 1.215 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.356 0.644 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.351 0.649 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 7.895 12.745 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.299 3.701 5 O -0.357 6.357 6 C -0.008 4.008 7 H 0.098 0.902 8 C -0.116 4.116 9 C -0.077 4.077 10 C -0.128 4.128 11 C -0.124 4.124 12 C -0.132 4.132 13 C -0.052 4.052 14 Cl -0.036 7.036 15 C -0.122 4.122 16 N -0.308 5.308 17 C -0.083 4.083 18 C 0.141 3.859 19 H 0.083 0.917 20 O -0.384 6.384 21 C -0.601 4.601 22 H 0.088 0.912 23 C -0.120 4.120 24 N -0.531 5.531 25 Si 0.698 3.302 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.138 1.138 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.197 0.803 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.850 6.489 13.275 23.951 hybrid contribution 0.544 0.929 -0.416 1.154 sum -18.305 7.418 12.859 23.568 Atomic orbital electron populations 1.21791 0.92838 1.02805 1.03342 1.22968 0.95065 0.80614 1.02650 1.86470 1.25069 1.32108 1.84765 1.23766 0.80145 0.92866 0.73340 1.90694 1.60078 1.42389 1.42501 1.20956 0.91697 0.88724 0.99427 0.90157 1.20733 1.02314 0.90779 0.97812 1.19714 0.94126 0.95400 0.98432 1.21164 1.00098 0.92735 0.98804 1.21092 0.95668 0.96521 0.99155 1.21089 0.94390 0.99268 0.98420 1.20923 0.88774 0.94668 1.00884 1.98395 1.28333 1.93215 1.83660 1.21098 0.96017 0.94897 1.00186 1.60110 1.01000 1.48390 1.21261 1.22724 0.99384 1.00160 0.85992 1.19788 0.86825 0.85028 0.94266 0.91688 1.86717 1.78089 1.16935 1.56694 1.21457 0.93180 1.53351 0.92061 0.91162 1.24977 0.98619 0.92396 0.95987 1.69965 1.14015 1.48422 1.20724 0.87008 0.79024 0.78990 0.85136 1.21375 1.22418 1.13755 0.91601 0.91547 0.90423 0.91289 0.91351 0.89167 0.88645 0.85241 0.85072 0.85016 0.84199 0.81914 0.90907 0.95604 0.80330 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.37 -4.57 10.03 -39.26 -0.39 -4.96 16 4 C 0.46 6.96 7.13 36.00 0.26 7.22 16 5 O -0.47 -9.00 15.67 -18.74 -0.29 -9.30 16 6 C 0.10 1.42 2.55 -68.87 -0.18 1.25 16 7 H 0.08 1.05 7.80 -51.93 -0.40 0.64 16 8 C -0.08 -0.82 4.94 -27.89 -0.14 -0.96 16 9 C -0.08 -0.80 4.85 -104.63 -0.51 -1.31 16 10 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 11 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 12 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 13 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 14 Cl -0.07 -0.79 28.96 -51.86 -1.50 -2.29 16 15 C -0.10 -1.21 7.82 -39.55 -0.31 -1.52 16 16 N -0.67 -11.46 5.84 -107.95 -0.63 -12.09 16 17 C 0.05 0.93 5.02 -3.82 -0.02 0.91 16 18 C 0.20 4.75 2.58 -27.88 -0.07 4.68 16 19 H 0.07 1.69 7.57 -51.93 -0.39 1.29 16 20 O -0.58 -12.98 9.48 -35.23 -0.33 -13.32 16 21 C -0.56 -15.95 9.34 -34.44 -0.32 -16.27 16 22 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 23 C 0.08 2.48 5.47 -17.82 -0.10 2.39 16 24 N -0.89 -27.76 13.96 55.43 0.77 -26.99 16 25 Si 0.87 22.46 26.99 -169.99 -4.59 17.87 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 27 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 28 H -0.22 -5.38 5.31 56.52 0.30 -5.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.70 7.51 -52.49 -0.39 1.31 16 40 H 0.36 5.79 4.86 -39.29 -0.19 5.59 16 41 H 0.07 1.60 7.62 -51.93 -0.40 1.20 16 42 H 0.03 0.50 8.06 -51.93 -0.42 0.09 16 43 H 0.35 7.08 9.04 45.56 0.41 7.49 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -33.99 382.18 -9.05 -43.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.66 Total: 10.45 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.19 Total: -8.17 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.14 Total: -39.08 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -1.02 Total: -27.58 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.59 Total: 17.87 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.99 -9.05 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931398344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.085 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds