Wall clock time and date at job start Tue Mar 31 2020 23:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.47206 * 109.47168 * 119.99757 * 2 1 3 5 5 N 2.60798 * 109.47035 * 119.99767 * 2 1 3 6 6 C 1.50701 * 109.47212 * 239.99807 * 2 1 3 7 7 O 1.21273 * 119.99897 * 239.99691 * 6 2 1 8 8 N 1.34776 * 119.99804 * 60.00144 * 6 2 1 9 9 C 1.46500 * 119.99873 * 179.97438 * 8 6 2 10 10 C 1.52996 * 109.47249 * 179.97438 * 9 8 6 11 11 O 1.42899 * 110.88385 * 61.12126 * 10 9 8 12 12 C 1.55154 * 111.00847 * 185.00095 * 10 9 8 13 13 C 1.54320 * 102.94202 * 153.57498 * 12 10 9 14 14 N 1.47022 * 107.27693 * 337.81283 * 13 12 10 15 15 C 1.34772 * 125.65343 * 178.99128 * 14 13 12 16 16 O 1.21277 * 120.00543 * 179.97438 * 15 14 13 17 17 C 1.50709 * 119.99842 * 359.96611 * 15 14 13 18 18 S 1.80993 * 109.47018 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99810 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00325 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99671 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47009 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47020 * 120.00292 * 23 21 19 26 26 H 1.48506 * 109.47159 * 240.00158 * 23 21 19 27 27 C 1.47429 * 108.69869 * 358.93412 * 14 13 12 28 28 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99848 * 0.02562 * 8 6 2 32 32 H 1.09000 * 109.47381 * 299.99983 * 9 8 6 33 33 H 1.09001 * 109.46596 * 60.00232 * 9 8 6 34 34 H 0.96700 * 114.00309 * 300.69806 * 11 10 9 35 35 H 1.08996 * 110.72211 * 271.94473 * 12 10 9 36 36 H 1.09003 * 110.71615 * 35.21930 * 12 10 9 37 37 H 1.09002 * 109.88083 * 97.22794 * 13 12 10 38 38 H 1.09006 * 109.88117 * 218.23536 * 13 12 10 39 39 H 1.09004 * 109.46807 * 300.00763 * 17 15 14 40 40 H 1.08995 * 109.46593 * 60.00448 * 17 15 14 41 41 H 0.96997 * 119.99395 * 179.97438 * 22 21 19 42 42 H 1.08999 * 110.37111 * 265.29205 * 27 14 13 43 43 H 1.08998 * 110.36366 * 142.97024 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7296 -1.6964 -1.1191 8 7 1.7068 -0.2500 -2.4545 9 6 2.1956 -0.9403 -3.6507 10 6 1.6850 -0.2195 -4.8999 11 8 2.1648 1.1258 -4.9437 12 6 2.0772 -0.9919 -6.1871 13 6 0.9807 -0.5733 -7.1891 14 7 -0.1772 -0.1198 -6.4048 15 6 -1.3355 0.3465 -6.9121 16 8 -2.2274 0.6940 -6.1674 17 6 -1.5224 0.4364 -8.4048 18 16 -3.1682 1.0961 -8.7682 19 6 -3.1164 1.0944 -10.5294 20 1 -2.2323 0.7472 -11.0434 21 6 -4.2124 1.5384 -11.2564 22 7 -5.2902 1.9611 -10.6299 23 14 -4.1578 1.5359 -13.1236 24 1 -2.8435 1.0166 -13.5796 25 1 -5.2420 0.6680 -13.6493 26 1 -4.3448 2.9208 -13.6261 27 6 0.1381 -0.2609 -4.9716 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.1494 0.5389 -2.5435 32 1 3.2856 -0.9399 -3.6505 33 1 1.8325 -1.9681 -3.6508 34 1 1.9024 1.6619 -4.1829 35 1 3.0606 -0.6806 -6.5392 36 1 2.0511 -2.0679 -6.0142 37 1 1.3439 0.2396 -7.8178 38 1 0.7008 -1.4248 -7.8094 39 1 -0.7650 1.0972 -8.8266 40 1 -1.4235 -0.5564 -8.8437 41 1 -6.0559 2.2716 -11.1380 42 1 -0.2339 -1.2130 -4.5932 43 1 -0.2902 0.5665 -4.4058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040759695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:54 Heat of formation + Delta-G solvation = -88.581091 kcal Electronic energy + Delta-G solvation = -26629.923776 eV Core-core repulsion = 22608.781124 eV Total energy + Delta-G solvation = -4021.142652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98657 -40.07635 -38.31990 -37.03741 -35.74640 -34.98670 -33.81207 -32.46353 -31.61630 -29.84566 -28.99095 -26.44514 -25.66753 -25.38325 -23.41260 -21.56050 -21.06889 -19.64464 -18.96135 -17.89025 -17.85530 -17.19279 -16.65306 -16.39281 -16.10302 -15.89093 -15.23096 -14.85677 -14.82516 -14.72520 -14.35902 -14.15962 -14.00740 -13.87149 -13.61183 -13.23893 -13.15133 -12.89189 -12.79247 -12.69988 -12.55046 -12.40522 -12.24033 -12.06950 -11.88493 -11.74213 -11.42464 -11.09753 -11.05178 -10.81243 -10.64419 -10.47113 -9.84444 -9.79894 -9.51639 -9.10683 -8.61417 -8.28078 -6.54535 -6.25438 -3.96238 1.87973 1.92484 2.31942 2.69430 2.77608 2.95824 3.19168 3.22833 3.24202 3.28549 3.49438 3.54868 3.85989 3.99775 4.04615 4.16877 4.19758 4.22906 4.34901 4.78230 4.83983 4.90640 4.94404 5.01493 5.07898 5.10103 5.21089 5.26842 5.36350 5.41554 5.43055 5.52096 5.59681 5.66177 5.68528 5.87608 6.09420 6.25582 6.65074 7.06097 7.07621 7.46287 7.52693 7.56950 8.32038 8.44425 9.20264 10.82072 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.001982 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.409159 B =14125.384519 C =14926.740116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.011 4.011 3 H 0.143 0.857 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.527 3.473 7 O -0.523 6.523 8 N -0.725 5.725 9 C 0.104 3.896 10 C 0.105 3.895 11 O -0.536 6.536 12 C -0.113 4.113 13 C 0.105 3.895 14 N -0.621 5.621 15 C 0.551 3.449 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.085 3.915 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.376 0.624 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.077 0.923 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.406 -2.994 15.765 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 H 0.161 0.839 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.310 3.690 7 O -0.398 6.398 8 N -0.379 5.379 9 C -0.020 4.020 10 C 0.063 3.937 11 O -0.341 6.341 12 C -0.151 4.151 13 C -0.018 4.018 14 N -0.358 5.358 15 C 0.340 3.660 16 O -0.390 6.390 17 C -0.298 4.298 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.039 4.039 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.153 -4.118 17.715 24.325 hybrid contribution 0.438 0.388 -2.014 2.097 sum 16.591 -3.730 15.701 23.145 Atomic orbital electron populations 1.21850 0.89132 1.04683 1.04888 1.18843 0.99063 1.00235 0.85375 0.83913 1.28039 0.93906 0.94043 0.94036 1.81215 1.07592 1.07662 1.11918 1.19981 0.80345 0.84626 0.84030 1.90815 1.36883 1.25608 1.86444 1.45813 1.54137 1.32541 1.05381 1.22008 1.00800 0.97013 0.82158 1.22597 0.92645 0.83831 0.94659 1.86645 1.77306 1.21340 1.48835 1.22651 1.00130 0.99901 0.92463 1.21977 0.85357 1.00088 0.94419 1.48359 1.15197 1.66243 1.06050 1.20043 0.79795 0.75601 0.90576 1.90704 1.40183 1.47292 1.60839 1.23510 1.07742 1.05313 0.93189 1.85374 1.08475 1.82658 1.06923 1.22897 1.04166 1.50214 0.91015 0.90842 1.24998 0.94524 0.94513 0.99550 1.70028 1.04173 1.40127 1.35942 0.86111 0.78268 0.77982 0.83103 1.19597 1.20557 1.20541 1.22800 0.93808 1.02753 0.84540 0.89908 0.89600 0.90787 0.76178 0.89495 0.89530 0.77640 0.88467 0.88656 0.90713 0.90840 0.89184 0.89257 0.92215 0.90517 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 9.04 37.16 0.34 0.04 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C 0.22 1.78 13.88 -20.76 -0.29 1.49 16 5 N -0.41 -4.71 18.54 42.15 0.78 -3.93 16 6 C 0.53 3.17 7.14 -10.99 -0.08 3.09 16 7 O -0.52 -5.74 16.03 5.56 0.09 -5.65 16 8 N -0.73 -2.66 5.07 -60.30 -0.31 -2.96 16 9 C 0.10 0.53 4.88 -4.04 -0.02 0.51 16 10 C 0.11 0.64 0.95 -88.47 -0.08 0.56 16 11 O -0.54 -3.66 13.19 -35.23 -0.46 -4.12 16 12 C -0.11 -0.71 6.16 -24.90 -0.15 -0.86 16 13 C 0.10 0.98 6.49 -3.07 -0.02 0.96 16 14 N -0.62 -7.82 3.33 -170.51 -0.57 -8.39 16 15 C 0.55 9.87 7.87 -10.98 -0.09 9.79 16 16 O -0.52 -11.09 16.12 5.56 0.09 -11.00 16 17 C -0.15 -2.89 5.35 36.01 0.19 -2.70 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -14.93 9.50 30.94 0.29 -14.63 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 23 Si 0.92 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C 0.08 0.75 5.65 -2.52 -0.01 0.73 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.03 7.56 -51.93 -0.39 -0.37 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.40 0.42 6.73 -40.82 -0.27 0.14 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.48 8.13 -51.93 -0.42 0.05 16 34 H 0.38 1.25 8.07 45.56 0.37 1.62 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.44 8.03 -51.93 -0.42 0.02 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 43 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -40.36 386.30 -6.68 -47.04 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -5.32 Total: -4.63 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.31 Total: 0.61 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.64 Total: -40.24 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.29 Total: -20.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.36 -6.68 -47.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040759695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.538 kcal (2) G-P(sol) polarization free energy of solvation -40.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds