Wall clock time and date at job start Tue Mar 31 2020 23:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46725 * 2 1 4 4 C 1.47199 * 109.47131 * 119.99896 * 2 1 3 5 5 N 2.60790 * 109.47253 * 120.00076 * 2 1 3 6 6 C 1.50695 * 109.47081 * 240.00256 * 2 1 3 7 7 O 1.21285 * 119.99949 * 239.99667 * 6 2 1 8 8 N 1.34778 * 120.00496 * 59.99804 * 6 2 1 9 9 C 1.46496 * 120.00459 * 180.02562 * 8 6 2 10 10 C 1.53000 * 109.47134 * 180.02562 * 9 8 6 11 11 O 1.42902 * 110.91272 * 297.54576 * 10 9 8 12 12 C 1.55448 * 111.11787 * 173.55556 * 10 9 8 13 13 C 1.54321 * 102.96961 * 206.45980 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34780 * 125.64285 * 181.07596 * 14 13 12 16 16 O 1.21287 * 119.99688 * 179.97438 * 15 14 13 17 17 C 1.50698 * 120.00303 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47052 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99912 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99739 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99776 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00209 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99834 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46780 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47160 * 119.99653 * 23 21 19 26 26 H 1.48496 * 109.46857 * 239.99844 * 23 21 19 27 27 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 28 28 H 1.09000 * 109.47488 * 299.99865 * 1 2 3 29 29 H 1.08995 * 109.47334 * 60.00301 * 1 2 3 30 30 H 1.09005 * 109.47183 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99841 * 359.97438 * 8 6 2 32 32 H 1.09001 * 109.47303 * 59.99569 * 9 8 6 33 33 H 1.09003 * 109.47018 * 299.99957 * 9 8 6 34 34 H 0.96699 * 114.00301 * 62.45220 * 11 10 9 35 35 H 1.08998 * 110.70855 * 88.08785 * 12 10 9 36 36 H 1.08997 * 110.70436 * 324.83533 * 12 10 9 37 37 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 38 38 H 1.09000 * 109.88483 * 141.60664 * 13 12 10 39 39 H 1.09004 * 109.47049 * 299.99920 * 17 15 14 40 40 H 1.08999 * 109.47179 * 59.99802 * 17 15 14 41 41 H 0.97002 * 120.00358 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36926 * 94.70918 * 27 14 13 43 43 H 1.08995 * 110.36556 * 216.92202 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.7296 -1.6964 -1.1192 8 7 1.7067 -0.2499 -2.4546 9 6 2.1946 -0.9408 -3.6508 10 6 1.6852 -0.2191 -4.9000 11 8 0.2577 -0.2493 -4.9601 12 6 2.3102 -0.8221 -6.1892 13 6 2.2684 0.3602 -7.1801 14 7 2.1933 1.5942 -6.3843 15 6 2.1190 2.8453 -6.8801 16 8 2.0606 3.7938 -6.1265 17 6 2.1084 3.0656 -8.3709 18 16 2.0016 4.8388 -8.7179 19 6 2.0061 4.8066 -10.4796 20 1 2.0643 3.8633 -11.0023 21 6 1.9358 5.9936 -11.1956 22 7 1.8654 7.1433 -10.5585 23 14 1.9398 5.9594 -13.0633 24 1 2.0250 4.5530 -13.5324 25 1 0.6887 6.5766 -13.5724 26 1 3.1094 6.7214 -13.5698 27 6 2.2125 1.2364 -4.9543 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.1487 0.5386 -2.5436 32 1 1.8309 -1.9684 -3.6506 33 1 3.2846 -0.9412 -3.6509 34 1 -0.1766 0.2048 -4.2251 35 1 1.7093 -1.6542 -6.5561 36 1 3.3378 -1.1374 -6.0081 37 1 1.3894 0.2773 -7.8192 38 1 3.1727 0.3661 -7.7887 39 1 3.0249 2.6648 -8.8039 40 1 1.2482 2.5579 -8.8071 41 1 1.8159 7.9728 -11.0589 42 1 3.2291 1.2864 -4.5643 43 1 1.5571 1.8987 -4.3888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040759699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:57 Heat of formation + Delta-G solvation = -88.731861 kcal Electronic energy + Delta-G solvation = -26589.783762 eV Core-core repulsion = 22568.634572 eV Total energy + Delta-G solvation = -4021.149190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97702 -40.07378 -38.31254 -37.03713 -35.73408 -34.99113 -33.82937 -32.46643 -31.60170 -29.84641 -28.98863 -26.47483 -25.67392 -25.38284 -23.41261 -21.55598 -21.07048 -19.64329 -18.94295 -17.90328 -17.82976 -17.22968 -16.65551 -16.39599 -16.11408 -15.77655 -15.36591 -14.89411 -14.83528 -14.65583 -14.33046 -14.15875 -14.00362 -13.88891 -13.65350 -13.27364 -13.08767 -12.92791 -12.79832 -12.69944 -12.55772 -12.42821 -12.23394 -12.08799 -11.88636 -11.74492 -11.41469 -11.09875 -11.05338 -10.81425 -10.65080 -10.46388 -9.84522 -9.79084 -9.52103 -9.10878 -8.62010 -8.28242 -6.54726 -6.25501 -3.96407 1.88797 1.92545 2.32125 2.69892 2.77106 2.95302 3.19117 3.22709 3.23877 3.28467 3.48805 3.54801 3.85966 4.00005 4.04727 4.16711 4.17586 4.22788 4.36019 4.78209 4.84077 4.84793 4.94390 4.99020 5.06767 5.10038 5.21752 5.26377 5.35279 5.36300 5.42712 5.51825 5.59406 5.66697 5.68456 5.87336 6.09126 6.25107 6.65837 7.06359 7.07798 7.46825 7.52158 7.56751 8.31884 8.43934 9.20171 10.81990 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.001946 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.163071 B =14385.097231 C =14996.561649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 H 0.145 0.855 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.527 3.473 7 O -0.523 6.523 8 N -0.725 5.725 9 C 0.105 3.895 10 C 0.105 3.895 11 O -0.536 6.536 12 C -0.113 4.113 13 C 0.105 3.895 14 N -0.621 5.621 15 C 0.551 3.449 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.084 3.916 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.403 0.597 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.376 0.624 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.077 0.923 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -17.110 15.507 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 H 0.162 0.838 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.310 3.690 7 O -0.398 6.398 8 N -0.378 5.378 9 C -0.019 4.019 10 C 0.063 3.937 11 O -0.341 6.341 12 C -0.151 4.151 13 C -0.018 4.018 14 N -0.359 5.359 15 C 0.340 3.660 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.040 4.040 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.224 0.776 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.083 -17.279 17.489 24.673 hybrid contribution -0.378 -0.169 -2.036 2.078 sum -2.461 -17.447 15.453 23.437 Atomic orbital electron populations 1.21829 0.89282 1.04465 1.04789 1.18846 0.98991 1.00402 0.85404 0.83795 1.28028 0.93932 0.94018 0.94028 1.81215 1.07509 1.07741 1.11918 1.19975 0.80402 0.84574 0.84031 1.90818 1.36859 1.25654 1.86453 1.45814 1.54289 1.32356 1.05368 1.21993 1.00595 0.97170 0.82135 1.22645 0.82148 0.94320 0.94632 1.86636 1.16549 1.79346 1.51604 1.22698 1.01586 0.98298 0.92517 1.21988 1.02594 0.82938 0.94322 1.48366 1.75637 1.05823 1.06047 1.20050 0.74919 0.80407 0.90645 1.90708 1.48264 1.39854 1.60192 1.23507 1.04914 1.08113 0.93208 1.85379 1.96358 0.94612 1.07093 1.22897 1.58689 0.95697 0.91009 0.90839 1.24993 0.94495 0.94549 0.99532 1.70021 1.46721 0.97582 1.35945 0.86113 0.77928 0.78321 0.83115 1.19595 1.20538 1.20556 1.22801 1.01909 0.94626 0.84655 0.89928 0.89737 0.90878 0.76178 0.89497 0.89556 0.77610 0.88474 0.88672 0.90683 0.90830 0.89248 0.89176 0.92208 0.90513 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.18 9.04 37.16 0.34 0.16 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.06 8.14 -51.93 -0.42 -0.36 16 4 C 0.22 1.79 13.88 -20.76 -0.29 1.50 16 5 N -0.41 -4.72 18.54 42.15 0.78 -3.94 16 6 C 0.53 3.20 7.14 -10.99 -0.08 3.12 16 7 O -0.52 -5.77 16.03 5.55 0.09 -5.68 16 8 N -0.72 -2.71 5.09 -60.30 -0.31 -3.02 16 9 C 0.11 0.54 4.91 -4.04 -0.02 0.52 16 10 C 0.10 0.64 0.95 -88.31 -0.08 0.56 16 11 O -0.54 -3.62 13.18 -35.23 -0.46 -4.08 16 12 C -0.11 -0.70 6.17 -24.74 -0.15 -0.85 16 13 C 0.10 0.98 6.49 -3.06 -0.02 0.96 16 14 N -0.62 -7.81 3.33 -170.53 -0.57 -8.38 16 15 C 0.55 9.87 7.87 -10.98 -0.09 9.78 16 16 O -0.52 -11.10 16.12 5.55 0.09 -11.01 16 17 C -0.15 -2.88 5.35 36.00 0.19 -2.69 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -14.92 9.50 30.94 0.29 -14.63 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.08 0.74 5.59 -2.53 -0.01 0.73 16 28 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 -0.08 7.56 -51.93 -0.39 -0.47 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.40 0.45 6.73 -40.82 -0.27 0.18 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.38 1.24 8.23 45.56 0.37 1.62 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.44 8.02 -51.93 -0.42 0.02 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 42 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 43 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -40.37 386.37 -6.67 -47.04 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.30 Total: -4.73 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.31 Total: 0.77 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.64 Total: -40.29 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.29 Total: -20.78 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.37 -6.67 -47.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040759699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.687 kcal (2) G-P(sol) polarization free energy of solvation -40.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds