Wall clock time and date at job start Tue Mar 31 2020 23:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46980 * 2 1 4 4 C 1.47192 * 109.47191 * 239.99190 * 2 1 3 5 5 N 2.60797 * 109.47115 * 239.99200 * 2 1 3 6 6 C 1.50706 * 109.46694 * 119.99572 * 2 1 3 7 7 O 1.21273 * 120.00203 * 120.00103 * 6 2 1 8 8 N 1.34772 * 119.99879 * 299.99711 * 6 2 1 9 9 C 1.46502 * 120.00050 * 180.02562 * 8 6 2 10 10 C 1.52999 * 109.47082 * 180.02562 * 9 8 6 11 11 O 1.42899 * 110.64271 * 61.86112 * 10 9 8 12 12 C 1.55163 * 110.72133 * 184.99858 * 10 9 8 13 13 C 1.54901 * 101.58294 * 153.86486 * 12 10 9 14 14 N 1.47422 * 104.83471 * 322.99332 * 13 12 10 15 15 C 1.34775 * 125.65226 * 204.09464 * 14 13 12 16 16 O 1.21282 * 120.00577 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99768 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99746 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46889 * 89.99690 * 23 21 19 25 25 H 1.48494 * 109.47191 * 209.99639 * 23 21 19 26 26 H 1.48501 * 109.46989 * 330.00246 * 23 21 19 27 27 C 1.47020 * 108.70252 * 24.35400 * 14 13 12 28 28 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47267 * 300.00786 * 1 2 3 30 30 H 1.09001 * 109.46753 * 60.00943 * 1 2 3 31 31 H 0.97001 * 119.99993 * 0.02562 * 8 6 2 32 32 H 1.08998 * 109.46943 * 60.00187 * 9 8 6 33 33 H 1.08998 * 109.47059 * 299.99909 * 9 8 6 34 34 H 0.96702 * 114.00226 * 303.13632 * 11 10 9 35 35 H 1.09002 * 111.00122 * 35.79275 * 12 10 9 36 36 H 1.09000 * 111.00515 * 271.94321 * 12 10 9 37 37 H 1.09003 * 110.36950 * 204.15456 * 13 12 10 38 38 H 1.09003 * 110.46063 * 81.87816 * 13 12 10 39 39 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 40 40 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 41 41 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.88325 * 118.13022 * 27 14 13 43 43 H 1.08996 * 109.88459 * 239.29360 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2017 5 7 2.3994 -1.2297 -2.1292 6 6 2.0323 -0.7104 1.2306 7 8 2.7295 -1.6964 1.1195 8 7 1.7067 -0.2498 2.4546 9 6 2.1953 -0.9399 3.6509 10 6 1.6847 -0.2190 4.9000 11 8 0.2567 -0.2428 4.9470 12 6 2.2868 -0.8505 6.1831 13 6 2.2373 0.3427 7.1696 14 7 2.5517 1.5254 6.3477 15 6 3.0647 2.6852 6.8038 16 8 3.2841 3.5960 6.0335 17 6 3.3658 2.8505 8.2712 18 16 4.0389 4.5046 8.5665 19 6 4.2930 4.4251 10.3083 20 1 4.0419 3.5252 10.8501 21 6 4.8169 5.5186 10.9838 22 7 5.0062 5.4593 12.2850 23 14 5.2519 7.0748 10.0465 24 1 4.0725 7.9765 10.0099 25 1 6.3797 7.7623 10.7250 26 1 5.6489 6.7226 8.6596 27 6 2.2072 1.2324 4.9488 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.1487 0.5387 2.5435 32 1 3.2853 -0.9395 3.6508 33 1 1.8323 -1.9677 3.6512 34 1 -0.1690 0.1406 4.1680 35 1 3.3134 -1.1752 6.0139 36 1 1.6707 -1.6767 6.5380 37 1 2.9831 0.2172 7.9546 38 1 1.2421 0.4366 7.6044 39 1 4.0949 2.1009 8.5791 40 1 2.4490 2.7236 8.8468 41 1 5.3720 6.2237 12.7572 42 1 1.4329 1.9189 4.6061 43 1 3.0933 1.3267 4.3211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040759703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:00 Heat of formation + Delta-G solvation = -88.075548 kcal Electronic energy + Delta-G solvation = -26621.479495 eV Core-core repulsion = 22600.358765 eV Total energy + Delta-G solvation = -4021.120730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05462 -40.14315 -38.46286 -37.06631 -35.83621 -35.04739 -33.86682 -32.47641 -31.63504 -29.97157 -29.06722 -26.52868 -25.73648 -25.51960 -23.51502 -21.60137 -21.11608 -19.70839 -19.09126 -17.93537 -17.89438 -17.28426 -16.79732 -16.41148 -16.00394 -15.90737 -15.40913 -15.08216 -14.83618 -14.78362 -14.42780 -14.18131 -14.03230 -13.87717 -13.68347 -13.30404 -13.14970 -13.06177 -12.96086 -12.85005 -12.59012 -12.47403 -12.27901 -12.12008 -11.99229 -11.80145 -11.46646 -11.30155 -11.04262 -10.79579 -10.60979 -10.50399 -9.89985 -9.83849 -9.63721 -9.04006 -8.74451 -8.55035 -6.96967 -6.32339 -4.04772 1.85459 1.88817 2.29421 2.56513 2.66231 2.82933 3.09453 3.20324 3.29967 3.43585 3.47004 3.54081 3.81456 3.95417 4.00101 4.12877 4.14918 4.29521 4.32256 4.60719 4.73896 4.79161 4.87020 4.93929 5.04405 5.06556 5.07339 5.16721 5.25419 5.30014 5.35907 5.41618 5.44570 5.62076 5.66558 5.74485 5.94952 6.15652 6.61210 6.97024 7.04900 7.41246 7.43181 7.90570 8.30757 8.38122 9.13619 10.76777 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.002063 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.112745 B =13567.414485 C =14333.810506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 H 0.145 0.855 4 C 0.219 3.781 5 N -0.408 5.408 6 C 0.527 3.473 7 O -0.521 6.521 8 N -0.726 5.726 9 C 0.103 3.897 10 C 0.108 3.892 11 O -0.539 6.539 12 C -0.115 4.115 13 C 0.102 3.898 14 N -0.622 5.622 15 C 0.548 3.452 16 O -0.517 6.517 17 C -0.118 4.118 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.086 3.914 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.402 0.598 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.375 0.625 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -13.572 -19.520 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 H 0.162 0.838 4 C -0.101 4.101 5 N -0.083 5.083 6 C 0.310 3.690 7 O -0.396 6.396 8 N -0.380 5.380 9 C -0.021 4.021 10 C 0.066 3.934 11 O -0.344 6.344 12 C -0.154 4.154 13 C -0.021 4.021 14 N -0.359 5.359 15 C 0.337 3.663 16 O -0.391 6.391 17 C -0.269 4.269 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.038 4.038 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.238 0.762 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.223 0.777 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.970 -13.863 -21.352 27.720 hybrid contribution -0.510 0.571 0.750 1.072 sum -11.480 -13.293 -20.602 27.073 Atomic orbital electron populations 1.21825 0.89304 1.04473 1.04719 1.18843 0.98958 1.00407 0.85415 0.83807 1.28021 0.93979 0.94056 0.94038 1.81225 1.07429 1.07694 1.11908 1.19977 0.80410 0.84600 0.84013 1.90822 1.36701 1.25624 1.86413 1.45811 1.54366 1.32374 1.05418 1.22073 1.00828 0.97166 0.82060 1.22457 0.81843 0.93956 0.95110 1.86653 1.16903 1.84502 1.46355 1.22813 1.01910 0.98239 0.92411 1.22347 1.02090 0.83428 0.94239 1.48357 1.65232 1.14420 1.07907 1.20032 0.75822 0.80098 0.90367 1.90709 1.51308 1.39117 1.58003 1.23260 1.05044 1.04782 0.93768 1.84788 1.82345 1.12803 1.11632 1.22295 1.49767 1.05141 0.89718 0.89342 1.24712 0.93760 0.98367 0.94453 1.69935 1.42934 1.31563 1.07109 0.86737 0.79348 0.83464 0.82308 1.19194 1.19915 1.15944 1.22561 1.00995 0.95038 0.85197 0.90850 0.89801 0.89936 0.76247 0.89469 0.89382 0.77675 0.88567 0.88198 0.89646 0.90483 0.88436 0.88451 0.91907 0.90919 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.09 9.04 37.16 0.34 0.25 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 0.02 8.14 -51.93 -0.42 -0.40 16 4 C 0.22 1.74 13.88 -20.76 -0.29 1.46 16 5 N -0.41 -4.66 18.54 42.15 0.78 -3.88 16 6 C 0.53 3.08 7.14 -10.98 -0.08 3.01 16 7 O -0.52 -5.73 16.03 5.56 0.09 -5.64 16 8 N -0.73 -2.44 5.02 -60.29 -0.30 -2.74 16 9 C 0.10 0.51 4.74 -4.04 -0.02 0.49 16 10 C 0.11 0.61 0.93 -88.78 -0.08 0.52 16 11 O -0.54 -2.89 13.10 -35.23 -0.46 -3.35 16 12 C -0.12 -0.70 6.26 -24.58 -0.15 -0.86 16 13 C 0.10 0.91 6.68 -2.54 -0.02 0.89 16 14 N -0.62 -7.45 3.33 -170.52 -0.57 -8.01 16 15 C 0.55 9.34 7.87 -10.98 -0.09 9.25 16 16 O -0.52 -10.64 16.19 5.56 0.09 -10.55 16 17 C -0.12 -2.21 5.16 36.01 0.19 -2.02 16 18 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 19 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 22 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 23 Si 0.86 21.37 27.74 -169.99 -4.72 16.66 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 27 C 0.09 0.73 5.67 -3.06 -0.02 0.71 16 28 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.08 -0.15 7.56 -51.93 -0.39 -0.55 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.40 0.16 6.79 -40.82 -0.28 -0.12 16 32 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.38 0.60 8.05 45.56 0.37 0.97 16 35 H 0.10 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.74 7.48 -51.93 -0.39 0.35 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.69 7.85 -51.91 -0.41 1.28 16 40 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 43 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -40.16 382.54 -6.14 -46.30 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -5.30 Total: -5.37 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.30 Total: 1.63 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.69 Total: -39.94 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.28 Total: -19.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.66 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.16 -6.14 -46.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040759703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.773 kcal (2) G-P(sol) polarization free energy of solvation -40.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds