Wall clock time and date at job start Tue Mar 31 2020 23:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.47198 * 109.46997 * 119.99775 * 2 1 3 5 5 N 2.60799 * 109.47120 * 120.00017 * 2 1 3 6 6 C 1.50697 * 109.47207 * 239.99904 * 2 1 3 7 7 O 1.21285 * 119.99920 * 274.88298 * 6 2 1 8 8 N 1.34781 * 120.00101 * 94.87937 * 6 2 1 9 9 C 1.47018 * 125.64700 * 354.96342 * 8 6 2 10 10 C 1.54327 * 107.27098 * 181.03894 * 9 8 6 11 11 H 1.08997 * 110.71898 * 263.82900 * 10 9 8 12 12 O 1.42900 * 110.71793 * 140.73463 * 10 9 8 13 13 C 1.55448 * 102.96785 * 22.19593 * 10 9 8 14 14 H 1.08994 * 111.01506 * 82.52335 * 13 10 9 15 15 N 1.46497 * 111.11504 * 206.46877 * 13 10 9 16 16 C 1.46496 * 120.00439 * 53.54853 * 15 13 10 17 17 C 1.34778 * 119.99436 * 233.55533 * 15 13 10 18 18 O 1.21281 * 120.00188 * 359.97438 * 17 15 13 19 19 C 1.50711 * 119.99675 * 179.97438 * 17 15 13 20 20 S 1.80996 * 109.46874 * 179.97438 * 19 17 15 21 21 C 1.76198 * 100.00051 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99884 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00135 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99965 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47111 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46964 * 120.00328 * 25 23 21 28 28 H 1.48504 * 109.47244 * 240.00169 * 25 23 21 29 29 C 1.47421 * 125.64871 * 174.94010 * 8 6 2 30 30 H 1.09005 * 109.47203 * 64.96688 * 1 2 3 31 31 H 1.08998 * 109.47654 * 184.96999 * 1 2 3 32 32 H 1.09002 * 109.47119 * 304.97120 * 1 2 3 33 33 H 1.09000 * 109.88362 * 300.45892 * 9 8 6 34 34 H 1.09004 * 109.88510 * 61.47032 * 9 8 6 35 35 H 0.96699 * 113.99719 * 61.45714 * 12 10 9 36 36 H 1.09003 * 109.47141 * 90.00137 * 16 15 13 37 37 H 1.08997 * 109.47528 * 210.00262 * 16 15 13 38 38 H 1.09001 * 109.47540 * 330.00867 * 16 15 13 39 39 H 1.08996 * 109.46858 * 299.99958 * 19 17 15 40 40 H 1.09000 * 109.46874 * 60.00307 * 19 17 15 41 41 H 0.97006 * 120.00412 * 180.02562 * 24 23 21 42 42 H 1.08998 * 110.37089 * 274.73238 * 29 8 6 43 43 H 1.09006 * 110.36919 * 36.94711 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.1502 -1.9175 -1.2281 8 7 2.3506 -0.0044 -2.3335 9 6 2.1585 1.4425 -2.5097 10 6 2.6404 1.7988 -3.9319 11 1 3.6685 2.1604 -3.9114 12 8 1.7773 2.7680 -4.5301 13 6 2.5505 0.4399 -4.6814 14 1 1.5345 0.2513 -5.0281 15 7 3.5014 0.3873 -5.7946 16 6 4.9202 0.6664 -5.5599 17 6 3.0707 0.0821 -7.0347 18 8 1.8961 -0.1493 -7.2289 19 6 4.0488 0.0285 -8.1801 20 16 3.1715 -0.4047 -9.7027 21 6 4.5150 -0.3974 -10.8427 22 1 5.5128 -0.1667 -10.4998 23 6 4.2911 -0.6881 -12.1812 24 7 3.0749 -0.9687 -12.5993 25 14 5.7154 -0.6796 -13.3898 26 1 6.9701 -0.3357 -12.6738 27 1 5.8500 -2.0241 -14.0057 28 1 5.4584 0.3273 -14.4507 29 6 2.9493 -0.5550 -3.5630 30 1 -0.3634 0.4349 -0.9312 31 1 -0.3634 -1.0238 0.0890 32 1 -0.3633 0.5890 0.8421 33 1 1.1029 1.6921 -2.4026 34 1 2.7450 1.9872 -1.7698 35 1 1.7408 3.6090 -4.0543 36 1 5.4371 -0.2612 -5.3136 37 1 5.3590 1.0991 -6.4589 38 1 5.0204 1.3687 -4.7324 39 1 4.5234 1.0025 -8.2983 40 1 4.8098 -0.7239 -7.9730 41 1 2.9184 -1.1722 -13.5347 42 1 4.0340 -0.6039 -3.4678 43 1 2.5427 -1.5444 -3.7728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048302486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:07 Heat of formation + Delta-G solvation = -71.814719 kcal Electronic energy + Delta-G solvation = -27008.514478 eV Core-core repulsion = 22988.098870 eV Total energy + Delta-G solvation = -4020.415608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11077 -39.75017 -38.33444 -37.02577 -36.00970 -35.19682 -33.83079 -32.44694 -31.01322 -29.24278 -28.45566 -27.00889 -25.88436 -25.48610 -23.94475 -21.71816 -20.64018 -19.48616 -18.20367 -18.09076 -17.94049 -17.58492 -16.85847 -16.26724 -15.93761 -15.66760 -15.40960 -14.88778 -14.81851 -14.60805 -14.27156 -13.96326 -13.90024 -13.61725 -13.47080 -13.20651 -13.17787 -13.01428 -12.83475 -12.71488 -12.57591 -12.39908 -12.39014 -12.33270 -12.09893 -11.89113 -11.17305 -11.08494 -11.03635 -10.81483 -10.76081 -10.29088 -9.82329 -9.47765 -9.31953 -9.09126 -8.68962 -8.24846 -6.52344 -6.23466 -3.94280 1.78020 1.93593 2.28071 2.48973 2.81624 2.92961 3.20338 3.23085 3.29045 3.29442 3.51990 3.57179 3.76514 4.02096 4.18060 4.20860 4.25246 4.31216 4.41887 4.68451 4.71171 4.89284 4.93610 4.96076 5.00520 5.03650 5.11781 5.20062 5.29334 5.41898 5.45071 5.48823 5.52514 5.61191 5.78554 5.85025 6.08275 6.43859 6.76150 7.03402 7.19274 7.35559 7.47462 7.58053 8.33401 8.44074 9.21965 10.83953 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002089 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.656307 B =13402.948846 C =13605.492507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 H 0.133 0.867 4 C 0.217 3.783 5 N -0.408 5.408 6 C 0.541 3.459 7 O -0.517 6.517 8 N -0.609 5.609 9 C 0.064 3.936 10 C 0.080 3.920 11 H 0.083 0.917 12 O -0.540 6.540 13 C 0.141 3.859 14 H 0.128 0.872 15 N -0.614 5.614 16 C 0.074 3.926 17 C 0.539 3.461 18 O -0.507 6.507 19 C -0.149 4.149 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 C 0.098 3.902 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.380 0.620 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.268 0.732 42 H 0.080 0.920 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 10.786 24.838 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 H 0.150 0.850 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.326 3.674 7 O -0.391 6.391 8 N -0.345 5.345 9 C -0.060 4.060 10 C 0.019 3.981 11 H 0.100 0.900 12 O -0.345 6.345 13 C 0.035 3.965 14 H 0.146 0.854 15 N -0.349 5.349 16 C -0.069 4.069 17 C 0.327 3.673 18 O -0.380 6.380 19 C -0.299 4.299 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.026 4.026 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.697 8.392 25.406 26.810 hybrid contribution 2.409 1.066 -0.460 2.675 sum 0.712 9.458 24.946 26.689 Atomic orbital electron populations 1.21770 0.88827 1.04865 1.04560 1.18780 0.99408 0.99577 0.85250 0.84956 1.28102 0.94021 0.93987 0.94079 1.81234 1.07723 1.07633 1.11681 1.19638 0.77787 0.87088 0.82866 1.90823 1.52240 1.13513 1.82548 1.48110 1.62658 1.08902 1.14857 1.22994 1.03025 0.81396 0.98618 1.23285 0.94124 0.90650 0.90041 0.89953 1.86735 1.67388 1.26386 1.53977 1.22043 0.96985 0.91333 0.86122 0.85405 1.47636 1.08066 1.71905 1.07320 1.21843 0.80997 1.01121 1.02974 1.20398 0.89378 0.75047 0.82486 1.90710 1.17778 1.46681 1.82809 1.23556 1.01852 1.05028 0.99514 1.85443 1.12725 1.90606 0.94587 1.22889 0.95183 1.55146 0.95086 0.90861 1.24995 0.96561 0.94540 0.97516 1.70025 1.19859 1.43897 1.16414 0.86116 0.81177 0.77940 0.80246 1.19619 1.20571 1.20567 1.22631 0.98933 0.99087 0.81924 0.89724 0.90541 0.89936 0.89281 0.90145 0.77281 0.92284 0.90013 0.91398 0.89080 0.89091 0.92210 0.90182 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 9.13 37.16 0.34 -0.13 16 2 C -0.01 -0.03 2.73 -94.56 -0.26 -0.29 16 3 H 0.13 0.13 6.96 -51.93 -0.36 -0.23 16 4 C 0.22 1.89 14.14 -20.76 -0.29 1.60 16 5 N -0.41 -4.80 18.54 42.15 0.78 -4.02 16 6 C 0.54 4.64 6.82 -10.98 -0.07 4.56 16 7 O -0.52 -6.95 16.67 5.55 0.09 -6.86 16 8 N -0.61 -4.36 3.33 -170.52 -0.57 -4.93 16 9 C 0.06 0.24 5.93 -3.06 -0.02 0.22 16 10 C 0.08 0.52 3.88 -24.74 -0.10 0.42 16 11 H 0.08 0.41 6.03 -51.93 -0.31 0.10 16 12 O -0.54 -4.19 13.40 -35.23 -0.47 -4.66 16 13 C 0.14 1.49 3.20 -65.62 -0.21 1.28 16 14 H 0.13 1.75 7.02 -51.93 -0.36 1.39 16 15 N -0.61 -7.66 2.91 -171.30 -0.50 -8.16 16 16 C 0.07 0.63 9.13 59.84 0.55 1.18 16 17 C 0.54 9.69 7.69 -10.98 -0.08 9.60 16 18 O -0.51 -11.19 15.24 5.56 0.08 -11.11 16 19 C -0.15 -2.89 4.71 36.01 0.17 -2.72 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.53 -14.95 9.50 30.94 0.29 -14.65 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 25 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.10 0.90 6.52 -2.53 -0.02 0.88 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.09 0.23 8.06 -51.93 -0.42 -0.19 16 34 H 0.08 0.07 7.72 -51.93 -0.40 -0.34 16 35 H 0.38 0.89 9.11 45.56 0.42 1.31 16 36 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 38 H 0.07 0.38 6.02 -51.93 -0.31 0.07 16 39 H 0.09 1.62 7.40 -51.92 -0.38 1.23 16 40 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 0.65 7.22 -51.93 -0.37 0.28 16 43 H 0.10 1.08 7.99 -51.93 -0.41 0.67 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -40.45 380.33 -6.07 -46.52 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.92 Total: -3.57 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 0.20 Total: 3.92 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.45 Total: -42.24 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.29 Total: -22.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.45 -6.07 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.296 kcal (2) G-P(sol) polarization free energy of solvation -40.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds