Wall clock time and date at job start Tue Mar 31 2020 23:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.47198 * 109.46997 * 119.99775 * 2 1 3 5 5 N 2.60799 * 109.47120 * 120.00017 * 2 1 3 6 6 C 1.50697 * 109.47207 * 239.99904 * 2 1 3 7 7 O 1.21285 * 119.99920 * 274.88298 * 6 2 1 8 8 N 1.34781 * 120.00101 * 94.87937 * 6 2 1 9 9 C 1.47018 * 125.64700 * 354.96342 * 8 6 2 10 10 C 1.54327 * 107.27098 * 181.03894 * 9 8 6 11 11 H 1.08997 * 110.71898 * 263.82900 * 10 9 8 12 12 O 1.42900 * 110.71793 * 140.73463 * 10 9 8 13 13 C 1.55448 * 102.96785 * 22.19593 * 10 9 8 14 14 H 1.08994 * 111.01506 * 82.52335 * 13 10 9 15 15 N 1.46497 * 111.11504 * 206.46877 * 13 10 9 16 16 C 1.46496 * 120.00439 * 53.54853 * 15 13 10 17 17 C 1.34778 * 119.99436 * 233.55533 * 15 13 10 18 18 O 1.21281 * 120.00188 * 359.97438 * 17 15 13 19 19 C 1.50711 * 119.99675 * 179.97438 * 17 15 13 20 20 S 1.80996 * 109.46874 * 179.97438 * 19 17 15 21 21 C 1.76198 * 100.00051 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99884 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00135 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99965 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47111 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46964 * 120.00328 * 25 23 21 28 28 H 1.48504 * 109.47244 * 240.00169 * 25 23 21 29 29 C 1.47421 * 125.64871 * 174.94010 * 8 6 2 30 30 H 1.09005 * 109.47203 * 64.96688 * 1 2 3 31 31 H 1.08998 * 109.47654 * 184.96999 * 1 2 3 32 32 H 1.09002 * 109.47119 * 304.97120 * 1 2 3 33 33 H 1.09000 * 109.88362 * 300.45892 * 9 8 6 34 34 H 1.09004 * 109.88510 * 61.47032 * 9 8 6 35 35 H 0.96699 * 113.99719 * 61.45714 * 12 10 9 36 36 H 1.09003 * 109.47141 * 90.00137 * 16 15 13 37 37 H 1.08997 * 109.47528 * 210.00262 * 16 15 13 38 38 H 1.09001 * 109.47540 * 330.00867 * 16 15 13 39 39 H 1.08996 * 109.46858 * 299.99958 * 19 17 15 40 40 H 1.09000 * 109.46874 * 60.00307 * 19 17 15 41 41 H 0.97006 * 120.00412 * 180.02562 * 24 23 21 42 42 H 1.08998 * 110.37089 * 274.73238 * 29 8 6 43 43 H 1.09006 * 110.36919 * 36.94711 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.1502 -1.9175 -1.2281 8 7 2.3506 -0.0044 -2.3335 9 6 2.1585 1.4425 -2.5097 10 6 2.6404 1.7988 -3.9319 11 1 3.6685 2.1604 -3.9114 12 8 1.7773 2.7680 -4.5301 13 6 2.5505 0.4399 -4.6814 14 1 1.5345 0.2513 -5.0281 15 7 3.5014 0.3873 -5.7946 16 6 4.9202 0.6664 -5.5599 17 6 3.0707 0.0821 -7.0347 18 8 1.8961 -0.1493 -7.2289 19 6 4.0488 0.0285 -8.1801 20 16 3.1715 -0.4047 -9.7027 21 6 4.5150 -0.3974 -10.8427 22 1 5.5128 -0.1667 -10.4998 23 6 4.2911 -0.6881 -12.1812 24 7 3.0749 -0.9687 -12.5993 25 14 5.7154 -0.6796 -13.3898 26 1 6.9701 -0.3357 -12.6738 27 1 5.8500 -2.0241 -14.0057 28 1 5.4584 0.3273 -14.4507 29 6 2.9493 -0.5550 -3.5630 30 1 -0.3634 0.4349 -0.9312 31 1 -0.3634 -1.0238 0.0890 32 1 -0.3633 0.5890 0.8421 33 1 1.1029 1.6921 -2.4026 34 1 2.7450 1.9872 -1.7698 35 1 1.7408 3.6090 -4.0543 36 1 5.4371 -0.2612 -5.3136 37 1 5.3590 1.0991 -6.4589 38 1 5.0204 1.3687 -4.7324 39 1 4.5234 1.0025 -8.2983 40 1 4.8098 -0.7239 -7.9730 41 1 2.9184 -1.1722 -13.5347 42 1 4.0340 -0.6039 -3.4678 43 1 2.5427 -1.5444 -3.7728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048302486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:06 Heat of formation + Delta-G solvation = -105.455722 kcal Electronic energy + Delta-G solvation = -27009.973261 eV Core-core repulsion = 22988.098870 eV Total energy + Delta-G solvation = -4021.874391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81946 -40.78416 -39.21823 -37.73890 -36.67557 -36.21209 -34.57541 -34.37532 -32.01649 -30.07488 -29.35447 -27.84403 -27.65043 -26.31586 -24.57955 -22.52707 -21.28071 -20.58296 -19.65595 -18.75531 -18.69385 -18.60493 -17.74096 -17.19534 -16.87400 -16.76693 -16.66724 -16.42534 -15.86119 -15.35176 -15.17480 -15.03414 -14.65384 -14.51784 -14.36527 -14.20064 -14.12266 -13.92246 -13.58095 -13.52962 -13.44280 -13.19094 -13.18010 -13.11250 -13.06634 -12.90504 -12.79546 -12.58272 -12.50825 -11.81782 -11.67577 -11.37191 -11.15069 -10.92728 -10.86500 -10.24635 -9.99904 -9.62267 -8.66355 -8.33741 -6.11922 1.11359 1.23513 1.33958 1.42324 1.47665 1.55103 1.58006 1.64210 1.88059 2.17034 2.28153 2.76789 3.00579 3.03867 3.21253 3.28605 3.52803 3.60972 3.74656 3.90900 3.97636 4.02478 4.11896 4.22355 4.23654 4.33434 4.48496 4.58453 4.66218 4.72519 4.72983 4.79508 4.81542 4.87580 4.94833 5.04293 5.24362 5.43164 5.51063 6.17972 6.20292 6.21910 6.42083 6.85494 6.99518 7.07631 7.11596 8.75696 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002089 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.656307 B =13402.948846 C =13605.492507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 H 0.189 0.811 4 C 0.240 3.760 5 N -0.470 5.470 6 C 0.537 3.463 7 O -0.579 6.579 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.091 3.909 11 H 0.110 0.890 12 O -0.570 6.570 13 C 0.129 3.871 14 H 0.086 0.914 15 N -0.599 5.599 16 C 0.061 3.939 17 C 0.534 3.466 18 O -0.563 6.563 19 C -0.121 4.121 20 S -0.157 6.157 21 C -0.542 4.542 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.274 1.274 29 C 0.104 3.896 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.098 0.902 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 13.953 26.710 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 H 0.206 0.794 4 C -0.079 4.079 5 N -0.146 5.146 6 C 0.325 3.675 7 O -0.457 6.457 8 N -0.338 5.338 9 C -0.059 4.059 10 C 0.030 3.970 11 H 0.127 0.873 12 O -0.379 6.379 13 C 0.023 3.977 14 H 0.104 0.896 15 N -0.332 5.332 16 C -0.080 4.080 17 C 0.322 3.678 18 O -0.441 6.441 19 C -0.272 4.272 20 S 0.071 5.929 21 C -0.690 4.690 22 H 0.103 0.897 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.178 1.178 27 H -0.202 1.202 28 H -0.199 1.199 29 C -0.020 4.020 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.628 11.637 27.342 29.722 hybrid contribution 1.667 0.128 -0.959 1.928 sum 2.295 11.765 26.383 28.979 Atomic orbital electron populations 1.21851 0.87413 1.04057 1.06658 1.19088 1.00217 1.01050 0.81419 0.79399 1.28802 0.92400 0.92665 0.93997 1.81249 1.09875 1.09519 1.13994 1.20279 0.76835 0.86517 0.83912 1.90808 1.54901 1.16360 1.83675 1.48140 1.61598 1.10472 1.13549 1.23309 1.05403 0.79141 0.98011 1.23232 0.95532 0.88103 0.90096 0.87270 1.86690 1.67794 1.28024 1.55400 1.22129 0.94481 0.95282 0.85764 0.89556 1.47545 1.10220 1.69591 1.05847 1.22226 0.78149 1.02987 1.04620 1.20188 0.88239 0.75294 0.84035 1.90690 1.19715 1.49684 1.83969 1.23365 1.01418 1.06346 0.96097 1.85654 1.16169 1.91408 0.99697 1.23223 0.95363 1.54916 0.95532 0.89727 1.26146 0.99606 0.93825 0.99735 1.70196 1.22526 1.45155 1.16972 0.84897 0.77653 0.78039 0.77298 1.17804 1.20152 1.19942 1.22396 0.99780 0.97178 0.82684 0.87998 0.93068 0.87264 0.87323 0.84916 0.74402 0.90922 0.90078 0.87299 0.86989 0.87332 0.92047 0.88381 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 9.13 71.98 0.66 0.15 16 2 C 0.01 0.04 2.73 -13.35 -0.04 0.00 16 3 H 0.19 -0.90 6.96 -2.39 -0.02 -0.92 16 4 C 0.24 3.78 14.14 89.44 1.27 5.04 16 5 N -0.47 -10.92 18.54 20.01 0.37 -10.55 16 6 C 0.54 8.21 6.82 87.66 0.60 8.81 16 7 O -0.58 -15.87 16.67 -3.05 -0.05 -15.92 16 8 N -0.60 -6.94 3.33 -811.78 -2.70 -9.64 16 9 C 0.06 0.14 5.93 86.73 0.51 0.66 16 10 C 0.09 0.81 3.88 31.89 0.12 0.93 16 11 H 0.11 0.42 6.03 -2.39 -0.01 0.40 16 12 O -0.57 -7.04 13.40 -148.98 -2.00 -9.04 16 13 C 0.13 2.59 3.20 46.49 0.15 2.74 16 14 H 0.09 2.51 7.02 -2.39 -0.02 2.49 16 15 N -0.60 -14.25 2.91 -814.26 -2.37 -16.62 16 16 C 0.06 0.84 9.13 127.77 1.17 2.00 16 17 C 0.53 19.60 7.69 87.66 0.67 20.27 16 18 O -0.56 -26.39 15.24 -3.03 -0.05 -26.43 16 19 C -0.12 -4.71 4.71 71.24 0.34 -4.37 16 20 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 21 C -0.54 -30.65 9.50 67.95 0.65 -30.01 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.65 5.49 84.86 0.47 1.11 16 24 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 25 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 26 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 C 0.10 1.80 6.52 86.86 0.57 2.37 16 30 H 0.10 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.11 -0.07 8.06 -2.39 -0.02 -0.09 16 34 H 0.13 -0.89 7.72 -2.38 -0.02 -0.91 16 35 H 0.40 0.17 9.11 -74.06 -0.67 -0.51 16 36 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 37 H 0.08 1.17 6.44 -2.39 -0.02 1.16 16 38 H 0.11 0.63 6.02 -2.39 -0.01 0.61 16 39 H 0.11 3.85 7.40 -2.40 -0.02 3.83 16 40 H 0.11 3.80 8.11 -2.40 -0.02 3.78 16 41 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.10 1.36 7.22 -2.39 -0.02 1.34 16 43 H 0.06 1.47 7.99 -2.38 -0.02 1.45 16 Total: -1.00 -99.06 380.33 1.87 -97.20 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 0.39 Total: 1.60 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.13 Total: 9.72 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -4.42 Total: -92.53 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -2.09 Total: -51.39 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -99.06 1.87 -97.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.259 kcal (2) G-P(sol) polarization free energy of solvation -99.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds