Wall clock time and date at job start Tue Mar 31 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.47198 * 109.46735 * 239.99271 * 2 1 3 5 5 N 2.60799 * 109.46997 * 239.99430 * 2 1 3 6 6 C 1.50701 * 109.46584 * 119.99788 * 2 1 3 7 7 O 1.21279 * 119.99870 * 94.12106 * 6 2 1 8 8 N 1.34776 * 120.00070 * 274.11564 * 6 2 1 9 9 C 1.47025 * 125.64585 * 354.75772 * 8 6 2 10 10 C 1.54377 * 107.28654 * 181.05803 * 9 8 6 11 11 H 1.09006 * 110.70092 * 263.79807 * 10 9 8 12 12 O 1.42892 * 110.75636 * 140.51009 * 10 9 8 13 13 C 1.55155 * 102.91963 * 22.14093 * 10 9 8 14 14 H 1.09000 * 111.00377 * 82.63761 * 13 10 9 15 15 N 1.46504 * 111.00394 * 206.45411 * 13 10 9 16 16 C 1.46494 * 119.99954 * 56.81871 * 15 13 10 17 17 C 1.34774 * 119.99905 * 236.82016 * 15 13 10 18 18 O 1.21286 * 120.00016 * 0.02562 * 17 15 13 19 19 C 1.50694 * 120.00037 * 179.97438 * 17 15 13 20 20 S 1.81002 * 109.47476 * 180.02562 * 19 17 15 21 21 C 1.76192 * 100.00133 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00548 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99681 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47286 * 60.00312 * 25 23 21 27 27 H 1.48498 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47163 * 300.00057 * 25 23 21 29 29 C 1.47421 * 125.64886 * 174.72200 * 8 6 2 30 30 H 1.08998 * 109.47862 * 184.94316 * 1 2 3 31 31 H 1.09003 * 109.47271 * 304.93994 * 1 2 3 32 32 H 1.09004 * 109.46838 * 64.93620 * 1 2 3 33 33 H 1.08997 * 109.88459 * 300.44336 * 9 8 6 34 34 H 1.09000 * 109.87837 * 61.45967 * 9 8 6 35 35 H 0.96702 * 113.99833 * 66.47809 * 12 10 9 36 36 H 1.08999 * 109.47542 * 270.00360 * 16 15 13 37 37 H 1.08998 * 109.47351 * 30.00514 * 16 15 13 38 38 H 1.09003 * 109.47159 * 149.99750 * 16 15 13 39 39 H 1.09001 * 109.47621 * 60.00271 * 19 17 15 40 40 H 1.09003 * 109.47095 * 300.00235 * 19 17 15 41 41 H 0.96997 * 120.00375 * 180.02562 * 24 23 21 42 42 H 1.08995 * 110.37050 * 37.06604 * 29 8 6 43 43 H 1.08999 * 110.45972 * 274.79048 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6941 -1.2018 5 7 2.3993 -1.2296 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.3055 -1.8909 1.1801 8 7 2.1778 -0.0338 2.3870 9 6 1.9894 1.4138 2.5624 10 6 2.2883 1.7394 4.0415 11 1 1.3666 1.7722 4.6227 12 8 3.0029 2.9716 4.1544 13 6 3.1759 0.5472 4.4867 14 1 4.2155 0.7059 4.2002 15 7 3.0608 0.3166 5.9289 16 6 1.7478 0.0647 6.5279 17 6 4.1628 0.3363 6.7045 18 8 5.2497 0.5454 6.2087 19 6 4.0443 0.0997 8.1881 20 16 5.6854 0.1892 8.9463 21 6 5.2618 -0.1142 10.6294 22 1 4.2312 -0.2822 10.9051 23 6 6.2527 -0.1374 11.6011 24 7 7.5087 0.0678 11.2653 25 14 5.8035 -0.4584 13.3857 26 1 5.1564 -1.7899 13.5015 27 1 7.0328 -0.4309 14.2183 28 1 4.8641 0.5912 13.8562 29 6 2.5516 -0.6227 3.6858 30 1 -0.3635 -1.0238 0.0885 31 1 -0.3634 0.5886 0.8424 32 1 -0.3633 0.4354 -0.9309 33 1 2.6787 1.9582 1.9170 34 1 0.9620 1.6858 2.3205 35 1 2.4921 3.7483 3.8880 36 1 1.2976 1.0110 6.8278 37 1 1.1047 -0.4289 5.7993 38 1 1.8642 -0.5756 7.4023 39 1 3.6150 -0.8863 8.3657 40 1 3.3996 0.8611 8.6271 41 1 8.2013 0.0512 11.9443 42 1 3.2827 -1.4187 3.5451 43 1 1.6692 -1.0053 4.1987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048302487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:10 Heat of formation + Delta-G solvation = -71.914101 kcal Electronic energy + Delta-G solvation = -27013.336042 eV Core-core repulsion = 22992.916125 eV Total energy + Delta-G solvation = -4020.419917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11423 -39.74659 -38.31794 -36.98903 -36.01145 -35.19896 -33.85239 -32.44386 -30.99894 -29.24363 -28.41219 -27.06301 -25.90877 -25.48442 -23.90152 -21.70918 -20.65239 -19.46344 -18.28271 -18.07084 -17.86496 -17.55424 -16.90529 -16.32670 -15.82389 -15.57735 -15.37762 -15.16414 -14.81717 -14.48925 -14.33416 -13.96509 -13.80947 -13.62379 -13.45974 -13.25307 -13.14279 -13.07101 -12.80557 -12.69933 -12.54774 -12.43107 -12.40096 -12.33393 -12.05286 -11.88913 -11.14107 -11.05712 -11.04989 -10.85021 -10.77031 -10.30679 -9.83886 -9.46794 -9.31481 -9.07326 -8.68515 -8.25255 -6.52156 -6.22741 -3.93844 1.80117 1.95007 2.32413 2.50712 2.81658 2.93986 3.22278 3.22688 3.27821 3.28623 3.51904 3.58373 3.79154 4.04352 4.18662 4.21285 4.24988 4.29273 4.48550 4.65845 4.70761 4.84778 4.91135 4.96347 4.98034 5.01888 5.12163 5.20389 5.25307 5.36937 5.42496 5.47854 5.54105 5.61088 5.78916 5.85085 6.08097 6.44217 6.76519 7.07660 7.21808 7.36079 7.47687 7.57658 8.33302 8.44907 9.22219 10.84568 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.002085 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.834181 B =13427.561588 C =13615.711764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.135 0.865 4 C 0.217 3.783 5 N -0.406 5.406 6 C 0.541 3.459 7 O -0.518 6.518 8 N -0.609 5.609 9 C 0.064 3.936 10 C 0.083 3.917 11 H 0.082 0.918 12 O -0.540 6.540 13 C 0.140 3.860 14 H 0.127 0.873 15 N -0.614 5.614 16 C 0.073 3.927 17 C 0.538 3.462 18 O -0.506 6.506 19 C -0.149 4.149 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.097 3.903 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.380 0.620 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.269 0.731 42 H 0.095 0.905 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 6.222 -18.490 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 H 0.153 0.847 4 C -0.102 4.102 5 N -0.081 5.081 6 C 0.326 3.674 7 O -0.393 6.393 8 N -0.345 5.345 9 C -0.060 4.060 10 C 0.021 3.979 11 H 0.100 0.900 12 O -0.344 6.344 13 C 0.034 3.966 14 H 0.145 0.855 15 N -0.350 5.350 16 C -0.070 4.070 17 C 0.326 3.674 18 O -0.379 6.379 19 C -0.299 4.299 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.027 4.027 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.227 0.773 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.054 4.650 -20.428 27.656 hybrid contribution -2.257 0.235 1.941 2.987 sum -20.311 4.885 -18.486 27.895 Atomic orbital electron populations 1.21754 0.88995 1.04641 1.04459 1.18779 0.99168 0.99852 0.85288 0.84748 1.28061 0.94096 0.94015 0.94067 1.81229 1.07472 1.07584 1.11830 1.19631 0.78149 0.86867 0.82709 1.90825 1.49108 1.15489 1.83833 1.48079 1.69102 1.08723 1.08551 1.23002 1.02454 0.81505 0.99076 1.23190 0.95708 0.86181 0.92784 0.90030 1.86743 1.42873 1.15380 1.89446 1.22000 1.02502 0.91007 0.81113 0.85471 1.47646 1.08004 1.73496 1.05824 1.21848 0.84186 1.01543 0.99439 1.20397 0.83149 0.75253 0.88565 1.90715 1.26287 1.46243 1.74662 1.23553 1.08436 1.04551 0.93393 1.85452 1.00214 1.93639 1.04006 1.22807 0.96335 1.56790 0.92522 0.90963 1.24994 0.94457 0.94642 0.99476 1.70000 0.99792 1.45958 1.34444 0.86226 0.77958 0.78915 0.82405 1.19934 1.20818 1.19941 1.22632 1.01055 0.96941 0.82025 0.90691 0.89857 0.89983 0.89458 0.90025 0.77303 0.92432 0.91200 0.89993 0.89092 0.89105 0.92095 0.88694 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.32 9.13 37.16 0.34 0.02 16 2 C -0.01 -0.03 2.67 -94.56 -0.25 -0.28 16 3 H 0.13 0.19 7.23 -51.93 -0.38 -0.18 16 4 C 0.22 1.97 14.03 -20.76 -0.29 1.68 16 5 N -0.41 -4.99 18.54 42.15 0.78 -4.21 16 6 C 0.54 4.60 6.93 -10.99 -0.08 4.52 16 7 O -0.52 -6.96 16.50 5.56 0.09 -6.86 16 8 N -0.61 -4.29 3.33 -170.49 -0.57 -4.85 16 9 C 0.06 0.25 5.90 -3.03 -0.02 0.23 16 10 C 0.08 0.54 3.91 -24.87 -0.10 0.45 16 11 H 0.08 0.40 7.17 -51.93 -0.37 0.02 16 12 O -0.54 -4.41 13.39 -35.23 -0.47 -4.88 16 13 C 0.14 1.48 3.18 -65.78 -0.21 1.27 16 14 H 0.13 1.80 7.01 -51.93 -0.36 1.43 16 15 N -0.61 -7.62 2.91 -171.48 -0.50 -8.12 16 16 C 0.07 0.60 9.07 59.84 0.54 1.14 16 17 C 0.54 9.71 7.69 -10.99 -0.08 9.63 16 18 O -0.51 -11.29 15.24 5.55 0.08 -11.21 16 19 C -0.15 -2.88 4.71 36.00 0.17 -2.71 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 22 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 25 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 29 C 0.10 0.86 6.50 -2.53 -0.02 0.85 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.01 7.65 -51.93 -0.40 -0.38 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 0.28 7.84 -51.93 -0.41 -0.13 16 34 H 0.08 0.04 7.65 -51.93 -0.40 -0.36 16 35 H 0.38 1.05 9.12 45.56 0.42 1.46 16 36 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 6.10 -51.93 -0.32 0.07 16 38 H 0.08 0.71 6.44 -51.93 -0.33 0.38 16 39 H 0.09 1.61 7.40 -51.92 -0.38 1.22 16 40 H 0.09 1.62 8.11 -51.91 -0.42 1.20 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.07 7.99 -51.93 -0.41 0.65 16 43 H 0.08 0.60 6.09 -51.93 -0.32 0.29 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -40.84 379.52 -6.05 -46.89 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.89 Total: -3.61 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 0.21 Total: 4.08 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.45 Total: -42.37 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.30 Total: -22.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.84 -6.05 -46.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.026 kcal (2) G-P(sol) polarization free energy of solvation -40.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds