Wall clock time and date at job start Tue Mar 31 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47282 * 2 1 4 4 C 1.47198 * 109.46735 * 239.99271 * 2 1 3 5 5 N 2.60799 * 109.46997 * 239.99430 * 2 1 3 6 6 C 1.50701 * 109.46584 * 119.99788 * 2 1 3 7 7 O 1.21279 * 119.99870 * 94.12106 * 6 2 1 8 8 N 1.34776 * 120.00070 * 274.11564 * 6 2 1 9 9 C 1.47025 * 125.64585 * 354.75772 * 8 6 2 10 10 C 1.54377 * 107.28654 * 181.05803 * 9 8 6 11 11 H 1.09006 * 110.70092 * 263.79807 * 10 9 8 12 12 O 1.42892 * 110.75636 * 140.51009 * 10 9 8 13 13 C 1.55155 * 102.91963 * 22.14093 * 10 9 8 14 14 H 1.09000 * 111.00377 * 82.63761 * 13 10 9 15 15 N 1.46504 * 111.00394 * 206.45411 * 13 10 9 16 16 C 1.46494 * 119.99954 * 56.81871 * 15 13 10 17 17 C 1.34774 * 119.99905 * 236.82016 * 15 13 10 18 18 O 1.21286 * 120.00016 * 0.02562 * 17 15 13 19 19 C 1.50694 * 120.00037 * 179.97438 * 17 15 13 20 20 S 1.81002 * 109.47476 * 180.02562 * 19 17 15 21 21 C 1.76192 * 100.00133 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00548 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99681 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47286 * 60.00312 * 25 23 21 27 27 H 1.48498 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47163 * 300.00057 * 25 23 21 29 29 C 1.47421 * 125.64886 * 174.72200 * 8 6 2 30 30 H 1.08998 * 109.47862 * 184.94316 * 1 2 3 31 31 H 1.09003 * 109.47271 * 304.93994 * 1 2 3 32 32 H 1.09004 * 109.46838 * 64.93620 * 1 2 3 33 33 H 1.08997 * 109.88459 * 300.44336 * 9 8 6 34 34 H 1.09000 * 109.87837 * 61.45967 * 9 8 6 35 35 H 0.96702 * 113.99833 * 66.47809 * 12 10 9 36 36 H 1.08999 * 109.47542 * 270.00360 * 16 15 13 37 37 H 1.08998 * 109.47351 * 30.00514 * 16 15 13 38 38 H 1.09003 * 109.47159 * 149.99750 * 16 15 13 39 39 H 1.09001 * 109.47621 * 60.00271 * 19 17 15 40 40 H 1.09003 * 109.47095 * 300.00235 * 19 17 15 41 41 H 0.96997 * 120.00375 * 180.02562 * 24 23 21 42 42 H 1.08995 * 110.37050 * 37.06604 * 29 8 6 43 43 H 1.08999 * 110.45972 * 274.79048 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6941 -1.2018 5 7 2.3993 -1.2296 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.3055 -1.8909 1.1801 8 7 2.1778 -0.0338 2.3870 9 6 1.9894 1.4138 2.5624 10 6 2.2883 1.7394 4.0415 11 1 1.3666 1.7722 4.6227 12 8 3.0029 2.9716 4.1544 13 6 3.1759 0.5472 4.4867 14 1 4.2155 0.7059 4.2002 15 7 3.0608 0.3166 5.9289 16 6 1.7478 0.0647 6.5279 17 6 4.1628 0.3363 6.7045 18 8 5.2497 0.5454 6.2087 19 6 4.0443 0.0997 8.1881 20 16 5.6854 0.1892 8.9463 21 6 5.2618 -0.1142 10.6294 22 1 4.2312 -0.2822 10.9051 23 6 6.2527 -0.1374 11.6011 24 7 7.5087 0.0678 11.2653 25 14 5.8035 -0.4584 13.3857 26 1 5.1564 -1.7899 13.5015 27 1 7.0328 -0.4309 14.2183 28 1 4.8641 0.5912 13.8562 29 6 2.5516 -0.6227 3.6858 30 1 -0.3635 -1.0238 0.0885 31 1 -0.3634 0.5886 0.8424 32 1 -0.3633 0.4354 -0.9309 33 1 2.6787 1.9582 1.9170 34 1 0.9620 1.6858 2.3205 35 1 2.4921 3.7483 3.8880 36 1 1.2976 1.0110 6.8278 37 1 1.1047 -0.4289 5.7993 38 1 1.8642 -0.5756 7.4023 39 1 3.6150 -0.8863 8.3657 40 1 3.3996 0.8611 8.6271 41 1 8.2013 0.0512 11.9443 42 1 3.2827 -1.4187 3.5451 43 1 1.6692 -1.0053 4.1987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048302487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:09 Heat of formation + Delta-G solvation = -106.197659 kcal Electronic energy + Delta-G solvation = -27014.822689 eV Core-core repulsion = 22992.916125 eV Total energy + Delta-G solvation = -4021.906564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81846 -40.77786 -39.20804 -37.72901 -36.69565 -36.20244 -34.57198 -34.37602 -31.99786 -30.07947 -29.29751 -27.87083 -27.64572 -26.27860 -24.53590 -22.52090 -21.28147 -20.56907 -19.65101 -18.82682 -18.62204 -18.57904 -17.74329 -17.29011 -16.86721 -16.78107 -16.49616 -16.36634 -15.92334 -15.53913 -15.04926 -15.00037 -14.61808 -14.51572 -14.42254 -14.20886 -14.13022 -13.75632 -13.64487 -13.55764 -13.39535 -13.21001 -13.18333 -13.13591 -12.99395 -12.84366 -12.75442 -12.61640 -12.44317 -11.80971 -11.68893 -11.40151 -11.11382 -10.94669 -10.85548 -10.24940 -9.99225 -9.60157 -8.66535 -8.32962 -6.11627 1.10005 1.27888 1.36693 1.45267 1.47146 1.55218 1.56686 1.65328 1.88049 2.17309 2.28989 2.75955 3.01091 3.04414 3.23442 3.29608 3.55072 3.62263 3.75224 3.93002 3.97702 4.08252 4.12478 4.20832 4.27561 4.35424 4.47692 4.57019 4.65183 4.74697 4.77420 4.80593 4.87463 4.92688 4.98811 5.04622 5.29074 5.42833 5.51820 6.18609 6.20619 6.22601 6.43285 6.86499 6.99659 7.07930 7.12705 8.75983 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.002085 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.834181 B =13427.561588 C =13615.711764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 H 0.182 0.818 4 C 0.237 3.763 5 N -0.474 5.474 6 C 0.538 3.462 7 O -0.580 6.580 8 N -0.603 5.603 9 C 0.064 3.936 10 C 0.092 3.908 11 H 0.113 0.887 12 O -0.573 6.573 13 C 0.126 3.874 14 H 0.080 0.920 15 N -0.598 5.598 16 C 0.061 3.939 17 C 0.533 3.467 18 O -0.565 6.565 19 C -0.120 4.120 20 S -0.159 6.159 21 C -0.544 4.544 22 H 0.086 0.914 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.262 1.262 27 H -0.281 1.281 28 H -0.260 1.260 29 C 0.104 3.896 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.270 0.730 42 H 0.058 0.942 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.831 8.012 -18.082 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 H 0.199 0.801 4 C -0.081 4.081 5 N -0.150 5.150 6 C 0.326 3.674 7 O -0.459 6.459 8 N -0.337 5.337 9 C -0.058 4.058 10 C 0.032 3.968 11 H 0.131 0.869 12 O -0.382 6.382 13 C 0.021 3.979 14 H 0.099 0.901 15 N -0.332 5.332 16 C -0.080 4.080 17 C 0.321 3.679 18 O -0.443 6.443 19 C -0.271 4.271 20 S 0.068 5.932 21 C -0.691 4.691 22 H 0.104 0.896 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.206 1.206 28 H -0.184 1.184 29 C -0.020 4.020 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.902 6.491 -20.047 31.121 hybrid contribution -0.852 -0.285 1.744 1.962 sum -23.754 6.206 -18.303 30.623 Atomic orbital electron populations 1.21867 0.86245 1.04410 1.06989 1.19153 1.01025 1.00701 0.81239 0.80100 1.28945 0.92367 0.92655 0.94114 1.81237 1.09769 1.09677 1.14349 1.20248 0.77206 0.86282 0.83691 1.90810 1.51943 1.18372 1.84792 1.48099 1.67946 1.10189 1.07429 1.23302 1.06175 0.78999 0.97286 1.23177 0.94845 0.84001 0.94803 0.86899 1.86698 1.44657 1.16858 1.89942 1.22086 1.01380 0.94509 0.79926 0.90149 1.47555 1.07986 1.71258 1.06370 1.22247 0.82207 1.03253 1.00310 1.20211 0.83888 0.75385 0.88386 1.90696 1.28806 1.49410 1.75376 1.23356 1.03294 1.06343 0.94110 1.85685 1.07684 1.94028 1.05796 1.23158 0.97033 1.56451 0.92497 0.89639 1.26161 0.94192 0.94100 1.04879 1.70184 1.01187 1.47392 1.36128 0.84993 0.77864 0.79460 0.75609 1.18621 1.20646 1.18410 1.22421 1.00951 0.95377 0.83281 0.92612 0.86247 0.88256 0.88311 0.84289 0.74482 0.90016 0.87577 0.90348 0.87128 0.87028 0.92064 0.92368 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 9.13 71.98 0.66 0.66 16 2 C 0.00 0.02 2.67 -13.35 -0.04 -0.02 16 3 H 0.18 -0.51 7.23 -2.39 -0.02 -0.53 16 4 C 0.24 4.09 14.03 89.44 1.25 5.35 16 5 N -0.47 -11.90 18.54 20.01 0.37 -11.53 16 6 C 0.54 8.11 6.93 87.66 0.61 8.72 16 7 O -0.58 -15.84 16.50 -3.03 -0.05 -15.89 16 8 N -0.60 -6.72 3.33 -811.69 -2.70 -9.42 16 9 C 0.06 0.16 5.90 86.75 0.51 0.67 16 10 C 0.09 0.85 3.91 31.80 0.12 0.97 16 11 H 0.11 0.38 7.17 -2.38 -0.02 0.36 16 12 O -0.57 -7.75 13.39 -148.98 -1.99 -9.74 16 13 C 0.13 2.57 3.18 46.38 0.15 2.71 16 14 H 0.08 2.43 7.01 -2.39 -0.02 2.42 16 15 N -0.60 -14.07 2.91 -814.84 -2.37 -16.44 16 16 C 0.06 0.77 9.07 127.77 1.16 1.93 16 17 C 0.53 19.62 7.69 87.66 0.67 20.29 16 18 O -0.57 -26.87 15.24 -3.05 -0.05 -26.91 16 19 C -0.12 -4.64 4.71 71.23 0.34 -4.31 16 20 S -0.16 -8.85 20.57 -56.49 -1.16 -10.01 16 21 C -0.54 -30.69 9.50 67.96 0.65 -30.04 16 22 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.64 5.49 84.86 0.47 1.11 16 24 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 25 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 29 C 0.10 1.72 6.50 86.86 0.56 2.28 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.12 -0.81 7.65 -2.39 -0.02 -0.83 16 32 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.10 0.12 7.84 -2.39 -0.02 0.10 16 34 H 0.14 -1.07 7.65 -2.39 -0.02 -1.08 16 35 H 0.40 0.64 9.12 -74.06 -0.68 -0.04 16 36 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 37 H 0.11 0.61 6.10 -2.39 -0.01 0.60 16 38 H 0.08 1.10 6.44 -2.39 -0.02 1.09 16 39 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 40 H 0.11 3.82 8.11 -2.39 -0.02 3.80 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.06 1.40 7.99 -2.39 -0.02 1.38 16 43 H 0.11 1.23 6.09 -2.39 -0.01 1.21 16 Total: -1.00 -101.20 379.52 1.86 -99.34 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 0.39 Total: 1.10 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 7.11 Total: 10.32 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.41 Total: -93.33 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -2.09 Total: -52.54 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -101.20 1.86 -99.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.862 kcal (2) G-P(sol) polarization free energy of solvation -101.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds