Wall clock time and date at job start Tue Mar 31 2020 23:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47190 * 2 1 4 4 C 1.47199 * 109.46714 * 120.00224 * 2 1 3 5 5 N 2.60795 * 109.46790 * 120.00145 * 2 1 3 6 6 C 1.50698 * 109.46951 * 240.00245 * 2 1 3 7 7 O 1.21281 * 119.99775 * 256.24562 * 6 2 1 8 8 N 1.34775 * 119.99918 * 75.97294 * 6 2 1 9 9 C 1.46508 * 119.99865 * 174.78510 * 8 6 2 10 10 C 1.46500 * 120.00343 * 354.78191 * 8 6 2 11 11 H 1.08998 * 110.63933 * 357.00113 * 10 8 6 12 12 C 1.54322 * 110.71671 * 120.14056 * 10 8 6 13 13 N 1.47324 * 107.11828 * 140.43282 * 12 10 8 14 14 C 1.34775 * 125.61628 * 181.11363 * 13 12 10 15 15 O 1.21279 * 120.00136 * 0.18607 * 14 13 12 16 16 C 1.50705 * 119.99922 * 180.19546 * 14 13 12 17 17 S 1.80998 * 109.46869 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99558 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00432 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99840 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47328 * 60.00330 * 22 20 18 24 24 H 1.48499 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47408 * 300.00007 * 22 20 18 26 26 C 1.47429 * 108.73276 * 1.29475 * 13 12 10 27 27 C 1.54906 * 104.83441 * 335.72135 * 26 13 12 28 28 H 1.09003 * 111.00169 * 278.93240 * 27 26 13 29 29 O 1.42900 * 111.00319 * 155.08461 * 27 26 13 30 30 H 1.08995 * 109.46806 * 293.27235 * 1 2 3 31 31 H 1.09011 * 109.46606 * 53.26677 * 1 2 3 32 32 H 1.08995 * 109.47150 * 173.26544 * 1 2 3 33 33 H 1.08994 * 109.46967 * 84.77889 * 9 8 6 34 34 H 1.08994 * 109.46968 * 204.78567 * 9 8 6 35 35 H 1.09002 * 109.46687 * 324.78463 * 9 8 6 36 36 H 1.09001 * 109.88330 * 259.97330 * 12 10 8 37 37 H 1.08995 * 109.88557 * 21.13901 * 12 10 8 38 38 H 1.09003 * 109.46576 * 299.99856 * 16 14 13 39 39 H 1.08994 * 109.47001 * 59.99582 * 16 14 13 40 40 H 0.97009 * 119.99873 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36834 * 216.87503 * 26 13 12 42 42 H 1.09006 * 110.45357 * 94.60817 * 26 13 12 43 43 H 0.96688 * 114.00503 * 67.79840 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.4699 -1.8381 -1.1434 8 7 1.9902 -0.0944 -2.4285 9 6 2.5819 -0.7379 -3.6042 10 6 1.3527 1.2185 -2.5552 11 1 0.9197 1.5287 -1.6043 12 6 2.3624 2.2688 -3.0640 13 7 1.6458 3.1327 -4.0182 14 6 2.1836 4.1622 -4.7018 15 8 3.3551 4.4404 -4.5568 16 6 1.3292 4.9678 -5.6463 17 16 2.3319 6.2693 -6.4059 18 6 1.1182 7.0315 -7.4309 19 1 0.1065 6.6538 -7.4421 20 6 1.4622 8.1181 -8.2232 21 7 2.6952 8.5787 -8.2091 22 14 0.1754 8.9266 -9.3093 23 1 -0.9357 9.4353 -8.4656 24 1 0.7917 10.0569 -10.0494 25 1 -0.3530 7.9308 -10.2760 26 6 0.2426 2.6877 -4.0983 27 6 0.2734 1.1994 -3.6697 28 1 0.5788 0.5605 -4.4984 29 8 -0.9929 0.7899 -3.1495 30 1 -0.3633 0.4060 0.9440 31 1 -0.3633 0.6147 -0.8237 32 1 -0.3633 -1.0205 -0.1205 33 1 1.8591 -1.4244 -4.0450 34 1 2.8541 0.0224 -4.3361 35 1 3.4728 -1.2907 -3.3060 36 1 2.7331 2.8621 -2.2280 37 1 3.1929 1.7722 -3.5657 38 1 0.9317 4.3148 -6.4233 39 1 0.5049 5.4198 -5.0948 40 1 2.9357 9.3378 -8.7630 41 1 -0.1273 2.7809 -5.1193 42 1 -0.3800 3.2662 -3.4157 43 1 -1.6991 0.7628 -3.8094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049387909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:07 Heat of formation + Delta-G solvation = -70.694730 kcal Electronic energy + Delta-G solvation = -27327.926656 eV Core-core repulsion = 23307.559615 eV Total energy + Delta-G solvation = -4020.367041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25470 -39.85357 -38.20664 -36.99954 -36.16077 -35.25121 -33.79772 -32.50834 -30.96011 -29.17843 -28.45799 -27.61507 -25.62997 -25.46795 -23.74419 -22.02339 -20.53514 -19.70224 -18.63723 -18.15762 -17.76329 -17.45781 -16.69655 -16.26606 -15.91399 -15.69748 -15.51081 -14.94098 -14.87422 -14.57622 -14.45788 -14.12758 -13.86358 -13.70702 -13.37611 -13.31961 -13.08299 -13.00011 -12.90313 -12.65669 -12.63879 -12.49392 -12.42417 -12.10861 -11.99790 -11.95283 -11.35560 -11.13077 -11.10239 -10.85305 -10.80423 -10.34556 -9.91548 -9.65702 -9.26614 -9.13683 -8.80723 -8.34636 -6.60357 -6.29368 -4.01314 1.90446 1.97469 2.40135 2.46737 2.73477 2.85648 3.15861 3.17539 3.23337 3.34104 3.37502 3.53378 3.76435 3.88327 4.12511 4.17406 4.24295 4.36060 4.43751 4.61586 4.71225 4.82588 4.87279 5.05836 5.10179 5.12023 5.14917 5.16003 5.29501 5.35739 5.38655 5.46205 5.53904 5.63198 5.74228 5.78551 5.98070 6.08820 6.65501 7.01789 7.15172 7.35067 7.49893 7.51223 8.26634 8.32571 9.15793 10.77906 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002208 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.263209 B =12680.758388 C =12995.471152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.015 4.015 3 H 0.137 0.863 4 C 0.221 3.779 5 N -0.410 5.410 6 C 0.532 3.468 7 O -0.520 6.520 8 N -0.598 5.598 9 C 0.079 3.921 10 C 0.122 3.878 11 H 0.126 0.874 12 C 0.097 3.903 13 N -0.624 5.624 14 C 0.551 3.449 15 O -0.507 6.507 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.072 3.928 27 C 0.083 3.917 28 H 0.084 0.916 29 O -0.551 6.551 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -16.524 10.614 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.040 4.040 3 H 0.155 0.845 4 C -0.098 4.098 5 N -0.085 5.085 6 C 0.317 3.683 7 O -0.395 6.395 8 N -0.330 5.330 9 C -0.062 4.062 10 C 0.017 3.983 11 H 0.143 0.857 12 C -0.027 4.027 13 N -0.364 5.364 14 C 0.339 3.661 15 O -0.380 6.380 16 C -0.298 4.298 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.501 5.501 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.053 4.053 27 C 0.022 3.978 28 H 0.102 0.898 29 O -0.357 6.357 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.399 -17.378 12.706 22.458 hybrid contribution -2.654 0.579 -1.901 3.316 sum -9.054 -16.798 10.805 21.930 Atomic orbital electron populations 1.21968 0.88664 1.05018 1.05091 1.18903 0.99566 0.99966 0.85555 0.84505 1.28040 0.93887 0.93879 0.93998 1.81204 1.07696 1.07794 1.11827 1.19945 0.78392 0.86198 0.83735 1.90793 1.45392 1.17791 1.85538 1.47609 1.57668 1.18934 1.08822 1.21765 0.99174 0.98283 0.87003 1.22443 0.91926 0.82690 1.01224 0.85658 1.22263 0.95089 0.91382 0.93939 1.48360 1.10524 1.32713 1.44784 1.20115 0.87950 0.78334 0.79670 1.90741 1.16532 1.66743 1.63981 1.23515 1.03316 1.02673 1.00274 1.85455 1.14350 1.30993 1.52416 1.22794 0.97581 1.18870 1.29301 0.90935 1.24998 0.96073 0.95952 0.96517 1.70001 1.17372 1.24395 1.38381 0.86217 0.80619 0.78734 0.79897 1.19902 1.20785 1.19919 1.22983 0.84367 0.94473 1.03469 1.23275 0.84709 0.94064 0.95747 0.89798 1.86440 1.18961 1.90082 1.40186 0.90181 0.88369 0.90820 0.91991 0.90165 0.90170 0.89886 0.90075 0.89227 0.89099 0.92036 0.89401 0.89829 0.76298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.82 37.16 0.33 -0.32 16 2 C -0.02 -0.10 2.24 -94.56 -0.21 -0.31 16 3 H 0.14 0.43 7.21 -51.93 -0.37 0.06 16 4 C 0.22 2.18 13.93 -20.76 -0.29 1.89 16 5 N -0.41 -5.24 18.54 42.15 0.78 -4.46 16 6 C 0.53 4.58 6.86 -10.99 -0.08 4.51 16 7 O -0.52 -6.65 15.85 5.56 0.09 -6.56 16 8 N -0.60 -4.07 2.88 -171.84 -0.49 -4.56 16 9 C 0.08 0.52 8.81 59.85 0.53 1.05 16 10 C 0.12 0.69 2.37 -66.10 -0.16 0.53 16 11 H 0.13 0.50 4.32 -51.93 -0.22 0.28 16 12 C 0.10 0.82 6.41 -2.90 -0.02 0.81 16 13 N -0.62 -6.77 3.33 -170.28 -0.57 -7.33 16 14 C 0.55 9.08 7.87 -10.98 -0.09 8.99 16 15 O -0.51 -10.52 16.19 5.56 0.09 -10.43 16 16 C -0.15 -2.66 5.16 36.01 0.19 -2.47 16 17 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 18 C -0.54 -14.49 9.50 30.94 0.29 -14.20 16 19 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -25.21 13.22 55.49 0.73 -24.47 16 22 Si 0.92 20.46 29.55 -169.99 -5.02 15.43 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.07 0.49 6.42 -2.53 -0.02 0.47 16 27 C 0.08 0.41 3.97 -24.59 -0.10 0.31 16 28 H 0.08 0.40 7.09 -51.93 -0.37 0.04 16 29 O -0.55 -2.07 12.27 -35.23 -0.43 -2.51 16 30 H 0.08 0.26 8.13 -51.93 -0.42 -0.16 16 31 H 0.10 0.36 4.85 -51.92 -0.25 0.11 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.47 6.59 -51.93 -0.34 0.13 16 35 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 6.46 -51.93 -0.34 0.41 16 38 H 0.09 1.46 7.85 -51.92 -0.41 1.06 16 39 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.09 0.57 7.48 -51.93 -0.39 0.18 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.39 0.16 9.12 45.56 0.42 0.57 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -38.16 375.18 -5.85 -44.01 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.76 Total: -4.24 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 0.29 Total: 3.19 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.45 Total: -40.83 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.25 Total: -19.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.16 -5.85 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049387909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.687 kcal (2) G-P(sol) polarization free energy of solvation -38.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds