Wall clock time and date at job start Tue Mar 31 2020 23:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47190 * 2 1 4 4 C 1.47199 * 109.46714 * 120.00224 * 2 1 3 5 5 N 2.60795 * 109.46790 * 120.00145 * 2 1 3 6 6 C 1.50698 * 109.46951 * 240.00245 * 2 1 3 7 7 O 1.21281 * 119.99775 * 256.24562 * 6 2 1 8 8 N 1.34775 * 119.99918 * 75.97294 * 6 2 1 9 9 C 1.46508 * 119.99865 * 174.78510 * 8 6 2 10 10 C 1.46500 * 120.00343 * 354.78191 * 8 6 2 11 11 H 1.08998 * 110.63933 * 357.00113 * 10 8 6 12 12 C 1.54322 * 110.71671 * 120.14056 * 10 8 6 13 13 N 1.47324 * 107.11828 * 140.43282 * 12 10 8 14 14 C 1.34775 * 125.61628 * 181.11363 * 13 12 10 15 15 O 1.21279 * 120.00136 * 0.18607 * 14 13 12 16 16 C 1.50705 * 119.99922 * 180.19546 * 14 13 12 17 17 S 1.80998 * 109.46869 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99558 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00432 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99840 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47328 * 60.00330 * 22 20 18 24 24 H 1.48499 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47408 * 300.00007 * 22 20 18 26 26 C 1.47429 * 108.73276 * 1.29475 * 13 12 10 27 27 C 1.54906 * 104.83441 * 335.72135 * 26 13 12 28 28 H 1.09003 * 111.00169 * 278.93240 * 27 26 13 29 29 O 1.42900 * 111.00319 * 155.08461 * 27 26 13 30 30 H 1.08995 * 109.46806 * 293.27235 * 1 2 3 31 31 H 1.09011 * 109.46606 * 53.26677 * 1 2 3 32 32 H 1.08995 * 109.47150 * 173.26544 * 1 2 3 33 33 H 1.08994 * 109.46967 * 84.77889 * 9 8 6 34 34 H 1.08994 * 109.46968 * 204.78567 * 9 8 6 35 35 H 1.09002 * 109.46687 * 324.78463 * 9 8 6 36 36 H 1.09001 * 109.88330 * 259.97330 * 12 10 8 37 37 H 1.08995 * 109.88557 * 21.13901 * 12 10 8 38 38 H 1.09003 * 109.46576 * 299.99856 * 16 14 13 39 39 H 1.08994 * 109.47001 * 59.99582 * 16 14 13 40 40 H 0.97009 * 119.99873 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36834 * 216.87503 * 26 13 12 42 42 H 1.09006 * 110.45357 * 94.60817 * 26 13 12 43 43 H 0.96688 * 114.00503 * 67.79840 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.4699 -1.8381 -1.1434 8 7 1.9902 -0.0944 -2.4285 9 6 2.5819 -0.7379 -3.6042 10 6 1.3527 1.2185 -2.5552 11 1 0.9197 1.5287 -1.6043 12 6 2.3624 2.2688 -3.0640 13 7 1.6458 3.1327 -4.0182 14 6 2.1836 4.1622 -4.7018 15 8 3.3551 4.4404 -4.5568 16 6 1.3292 4.9678 -5.6463 17 16 2.3319 6.2693 -6.4059 18 6 1.1182 7.0315 -7.4309 19 1 0.1065 6.6538 -7.4421 20 6 1.4622 8.1181 -8.2232 21 7 2.6952 8.5787 -8.2091 22 14 0.1754 8.9266 -9.3093 23 1 -0.9357 9.4353 -8.4656 24 1 0.7917 10.0569 -10.0494 25 1 -0.3530 7.9308 -10.2760 26 6 0.2426 2.6877 -4.0983 27 6 0.2734 1.1994 -3.6697 28 1 0.5788 0.5605 -4.4984 29 8 -0.9929 0.7899 -3.1495 30 1 -0.3633 0.4060 0.9440 31 1 -0.3633 0.6147 -0.8237 32 1 -0.3633 -1.0205 -0.1205 33 1 1.8591 -1.4244 -4.0450 34 1 2.8541 0.0224 -4.3361 35 1 3.4728 -1.2907 -3.3060 36 1 2.7331 2.8621 -2.2280 37 1 3.1929 1.7722 -3.5657 38 1 0.9317 4.3148 -6.4233 39 1 0.5049 5.4198 -5.0948 40 1 2.9357 9.3378 -8.7630 41 1 -0.1273 2.7809 -5.1193 42 1 -0.3800 3.2662 -3.4157 43 1 -1.6991 0.7628 -3.8094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049387909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:06 Heat of formation + Delta-G solvation = -101.106342 kcal Electronic energy + Delta-G solvation = -27329.245403 eV Core-core repulsion = 23307.559615 eV Total energy + Delta-G solvation = -4021.685788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91791 -40.77170 -39.12280 -37.78164 -36.63882 -36.09243 -34.55073 -34.37143 -32.01683 -30.00830 -29.23627 -28.25027 -27.61070 -26.03442 -24.51216 -22.59800 -21.14367 -20.78935 -19.62898 -19.16918 -18.65669 -18.20017 -17.62016 -17.00915 -16.84553 -16.71271 -16.58270 -16.45554 -15.85890 -15.48331 -15.31482 -15.03912 -14.79571 -14.45531 -14.37483 -14.12366 -14.07108 -13.80407 -13.68965 -13.58318 -13.31069 -13.22451 -13.13731 -13.04143 -13.03139 -12.83400 -12.61795 -12.60760 -12.47384 -11.86144 -11.71149 -11.30492 -11.09515 -11.01417 -10.85927 -10.23181 -9.90558 -9.72159 -8.63733 -8.31478 -6.09316 1.17799 1.29485 1.34196 1.46655 1.47850 1.56613 1.59033 1.65671 1.87191 2.12628 2.30634 2.72696 2.97123 3.03087 3.19753 3.24001 3.41100 3.67227 3.80830 3.87541 3.91454 4.04583 4.18634 4.24838 4.30681 4.32966 4.50933 4.57781 4.66309 4.66679 4.74660 4.81288 4.83810 4.90392 4.99290 5.16442 5.28585 5.34268 5.45196 6.05406 6.22637 6.31021 6.42431 6.85768 6.91264 7.10181 7.12283 8.77180 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002208 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.263209 B =12680.758388 C =12995.471152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 H 0.176 0.824 4 C 0.242 3.758 5 N -0.470 5.470 6 C 0.531 3.469 7 O -0.569 6.569 8 N -0.590 5.590 9 C 0.077 3.923 10 C 0.128 3.872 11 H 0.151 0.849 12 C 0.093 3.907 13 N -0.611 5.611 14 C 0.550 3.450 15 O -0.562 6.562 16 C -0.120 4.120 17 S -0.155 6.155 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.996 3.004 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.261 1.261 26 C 0.064 3.936 27 C 0.099 3.901 28 H 0.089 0.911 29 O -0.551 6.551 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.009 -16.790 10.484 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 H 0.193 0.807 4 C -0.076 4.076 5 N -0.146 5.146 6 C 0.318 3.682 7 O -0.447 6.447 8 N -0.320 5.320 9 C -0.064 4.064 10 C 0.024 3.976 11 H 0.168 0.832 12 C -0.031 4.031 13 N -0.348 5.348 14 C 0.339 3.661 15 O -0.440 6.440 16 C -0.271 4.271 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.185 1.185 24 H -0.209 1.209 25 H -0.186 1.186 26 C -0.059 4.059 27 C 0.038 3.962 28 H 0.107 0.893 29 O -0.359 6.359 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.990 -17.677 12.580 23.886 hybrid contribution -1.617 0.539 -1.817 2.491 sum -11.607 -17.138 10.763 23.329 Atomic orbital electron populations 1.21994 0.86702 1.04802 1.06599 1.19229 1.00891 1.00864 0.82688 0.80740 1.28717 0.92357 0.92627 0.93921 1.81215 1.09704 1.09689 1.13980 1.20323 0.77573 0.85674 0.84627 1.90784 1.47708 1.20021 1.86220 1.47606 1.57012 1.19013 1.08417 1.21796 0.98958 0.98631 0.87042 1.22510 0.91242 0.81094 1.02768 0.83172 1.22428 0.95628 0.91671 0.93373 1.48135 1.12565 1.30796 1.43283 1.19757 0.86972 0.79423 0.79977 1.90724 1.18591 1.68760 1.65956 1.23310 1.02308 1.00523 1.00952 1.85664 1.18268 1.34990 1.53875 1.23158 0.97946 1.18911 1.29035 0.89607 1.26115 0.98297 0.96688 0.98119 1.70180 1.19853 1.25135 1.39679 0.85031 0.77661 0.77607 0.77890 1.18546 1.20851 1.18556 1.23350 0.81828 0.95908 1.04802 1.23021 0.85225 0.92783 0.95211 0.89305 1.86415 1.18811 1.89681 1.41009 0.88525 0.86902 0.91955 0.91088 0.89393 0.91616 0.89513 0.91012 0.87115 0.87086 0.92105 0.88468 0.87989 0.74176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.82 71.98 0.63 -0.10 16 2 C -0.01 -0.12 2.24 -13.35 -0.03 -0.15 16 3 H 0.18 0.37 7.21 -2.39 -0.02 0.35 16 4 C 0.24 4.51 13.93 89.44 1.25 5.76 16 5 N -0.47 -12.05 18.54 20.00 0.37 -11.68 16 6 C 0.53 8.20 6.86 87.66 0.60 8.80 16 7 O -0.57 -14.37 15.85 -3.03 -0.05 -14.42 16 8 N -0.59 -6.60 2.88 -815.97 -2.35 -8.95 16 9 C 0.08 0.91 8.81 127.77 1.13 2.03 16 10 C 0.13 0.98 2.37 46.18 0.11 1.08 16 11 H 0.15 0.44 4.32 -2.39 -0.01 0.43 16 12 C 0.09 1.34 6.41 86.67 0.56 1.90 16 13 N -0.61 -11.64 3.33 -811.02 -2.70 -14.35 16 14 C 0.55 17.56 7.87 87.66 0.69 18.25 16 15 O -0.56 -23.76 16.19 -3.03 -0.05 -23.81 16 16 C -0.12 -4.15 5.16 71.24 0.37 -3.78 16 17 S -0.16 -8.08 20.57 -56.49 -1.16 -9.24 16 18 C -0.54 -29.14 9.50 67.96 0.65 -28.50 16 19 H 0.09 4.19 7.80 -2.91 -0.02 4.17 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -54.24 13.22 21.65 0.29 -53.96 16 22 Si 1.00 41.41 29.55 68.60 2.03 43.43 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 C 0.06 0.60 6.42 86.85 0.56 1.15 16 27 C 0.10 0.55 3.97 31.98 0.13 0.67 16 28 H 0.09 0.48 7.09 -2.39 -0.02 0.46 16 29 O -0.55 -1.34 12.27 -148.98 -1.83 -3.17 16 30 H 0.10 0.25 8.13 -2.39 -0.02 0.23 16 31 H 0.11 0.27 4.85 -2.38 -0.01 0.26 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.89 6.59 -2.39 -0.02 0.87 16 35 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.22 6.46 -2.39 -0.02 1.21 16 38 H 0.11 3.35 7.85 -2.39 -0.02 3.33 16 39 H 0.11 3.39 8.14 -2.40 -0.02 3.37 16 40 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 41 H 0.10 0.81 7.48 -2.39 -0.02 0.79 16 42 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.41 -1.77 9.12 -74.07 -0.68 -2.45 16 Total: -1.00 -88.54 375.18 2.04 -86.50 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 0.39 Total: 1.37 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.10 Total: 8.27 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -4.40 Total: -88.93 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.93 Total: -41.40 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -88.54 2.04 -86.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049387909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.602 kcal (2) G-P(sol) polarization free energy of solvation -88.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds