Wall clock time and date at job start Tue Mar 31 2020 23:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.47194 * 109.47253 * 239.99939 * 2 1 3 5 5 N 2.60806 * 109.47261 * 239.99802 * 2 1 3 6 6 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 7 7 O 1.21278 * 119.99985 * 119.99692 * 6 2 1 8 8 N 1.34777 * 120.00161 * 300.00385 * 6 2 1 9 9 C 1.46505 * 119.99832 * 359.97438 * 8 6 2 10 10 C 1.46496 * 120.00271 * 180.02562 * 8 6 2 11 11 H 1.08998 * 110.64021 * 0.69563 * 10 8 6 12 12 C 1.54321 * 110.72066 * 123.84076 * 10 8 6 13 13 N 1.47322 * 107.11825 * 140.42937 * 12 10 8 14 14 C 1.34780 * 125.61381 * 181.11188 * 13 12 10 15 15 O 1.21285 * 119.99860 * 0.18927 * 14 13 12 16 16 C 1.50700 * 119.99978 * 180.19475 * 14 13 12 17 17 S 1.81005 * 109.46883 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99652 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99686 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99557 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47343 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46838 * 120.00057 * 22 20 18 25 25 H 1.48498 * 109.46934 * 239.99590 * 22 20 18 26 26 C 1.47424 * 108.73904 * 1.29836 * 13 12 10 27 27 C 1.54915 * 104.82960 * 335.71867 * 26 13 12 28 28 H 1.09001 * 111.00041 * 278.93651 * 27 26 13 29 29 O 1.42901 * 111.00406 * 155.08365 * 27 26 13 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.08999 * 109.47333 * 89.99805 * 9 8 6 34 34 H 1.08997 * 109.47024 * 210.00620 * 9 8 6 35 35 H 1.09000 * 109.46875 * 330.00379 * 9 8 6 36 36 H 1.09008 * 109.88131 * 259.96931 * 12 10 8 37 37 H 1.08994 * 109.88354 * 21.13758 * 12 10 8 38 38 H 1.08995 * 109.47076 * 299.99461 * 16 14 13 39 39 H 1.09001 * 109.47125 * 59.99830 * 16 14 13 40 40 H 0.97004 * 119.99610 * 179.97438 * 21 20 18 41 41 H 1.08993 * 110.36800 * 216.88178 * 26 13 12 42 42 H 1.08998 * 110.45949 * 94.59768 * 26 13 12 43 43 H 0.96701 * 113.99695 * 67.80163 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0323 -0.7104 1.2305 7 8 2.7295 -1.6965 1.1193 8 7 1.7067 -0.2500 2.4546 9 6 0.8648 0.9415 2.5890 10 6 2.1954 -0.9402 3.6508 11 1 2.8147 -1.7939 3.3757 12 6 2.9770 0.0309 4.5605 13 7 2.6167 -0.2933 5.9517 14 6 3.0718 0.3434 7.0490 15 8 3.8438 1.2718 6.9350 16 6 2.6214 -0.0984 8.4176 17 16 3.4015 0.9440 9.6751 18 6 2.7183 0.2278 11.1329 19 1 2.0360 -0.6059 11.0562 20 6 3.0570 0.7352 12.3797 21 7 3.8889 1.7509 12.4730 22 14 2.3321 -0.0237 13.9250 23 1 1.4325 -1.1443 13.5512 24 1 3.4284 -0.5357 14.7860 25 1 1.5600 1.0055 14.6665 26 6 1.6801 -1.4318 5.9454 27 6 1.0116 -1.3875 4.5486 28 1 0.2047 -0.6551 4.5247 29 8 0.5386 -2.6805 4.1659 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.1833 0.6440 2.6220 34 1 1.1227 1.4667 3.5086 35 1 1.0287 1.6002 1.7362 36 1 4.0485 -0.1024 4.4110 37 1 2.6941 1.0590 4.3349 38 1 1.5378 -0.0070 8.4906 39 1 2.9100 -1.1373 8.5773 40 1 4.1253 2.1057 13.3443 41 1 0.9314 -1.3113 6.7282 42 1 2.2194 -2.3696 6.0782 43 1 -0.2013 -3.0022 4.6991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049387910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:10 Heat of formation + Delta-G solvation = -67.125275 kcal Electronic energy + Delta-G solvation = -27093.701757 eV Core-core repulsion = 23073.489499 eV Total energy + Delta-G solvation = -4020.212258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18779 -39.81757 -38.10604 -36.94361 -36.18456 -35.45787 -33.74320 -32.48927 -30.84742 -29.10495 -28.36998 -27.62365 -25.71998 -25.50226 -23.68834 -22.18766 -20.15001 -19.62300 -18.38977 -18.14345 -17.77413 -17.48048 -17.05804 -16.26911 -15.79771 -15.66934 -15.42060 -14.99092 -14.86089 -14.68214 -14.26169 -14.05194 -13.82496 -13.67531 -13.44527 -13.32521 -13.18339 -12.96170 -12.88821 -12.80905 -12.63950 -12.59791 -12.22945 -12.03280 -12.02163 -11.91407 -11.20224 -11.11584 -11.08316 -10.81620 -10.74597 -10.29028 -9.87293 -9.59916 -9.23206 -9.13218 -8.72762 -8.31036 -6.57669 -6.27741 -3.99079 1.89207 1.95646 2.37363 2.53101 2.78470 2.90646 3.17350 3.19396 3.26402 3.29313 3.43247 3.64706 3.86124 4.03497 4.14538 4.22777 4.25938 4.33406 4.49051 4.59500 4.77340 4.80703 4.85333 4.91122 4.95511 5.03000 5.07728 5.15096 5.22712 5.43114 5.44465 5.48781 5.54954 5.58602 5.78611 5.86787 6.02619 6.16187 6.67434 7.12697 7.16542 7.42641 7.52394 7.54044 8.29241 8.38032 9.17805 10.79699 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.002082 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.492239 B =13443.739283 C =13814.916297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.009 4.009 3 H 0.142 0.858 4 C 0.220 3.780 5 N -0.409 5.409 6 C 0.529 3.471 7 O -0.518 6.518 8 N -0.599 5.599 9 C 0.058 3.942 10 C 0.138 3.862 11 H 0.128 0.872 12 C 0.102 3.898 13 N -0.623 5.623 14 C 0.551 3.449 15 O -0.509 6.509 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.072 3.928 27 C 0.083 3.917 28 H 0.081 0.919 29 O -0.548 6.548 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 -2.526 -21.454 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.033 4.033 3 H 0.160 0.840 4 C -0.099 4.099 5 N -0.084 5.084 6 C 0.314 3.686 7 O -0.392 6.392 8 N -0.332 5.332 9 C -0.084 4.084 10 C 0.034 3.966 11 H 0.146 0.854 12 C -0.022 4.022 13 N -0.363 5.363 14 C 0.339 3.661 15 O -0.382 6.382 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.053 4.053 27 C 0.022 3.978 28 H 0.099 0.901 29 O -0.353 6.353 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.158 -2.255 -23.351 25.564 hybrid contribution -1.959 -1.343 2.047 3.136 sum -12.117 -3.597 -21.304 24.771 Atomic orbital electron populations 1.22087 0.89444 1.04794 1.05119 1.18807 0.99031 1.00118 0.85380 0.84020 1.28032 0.93894 0.94019 0.93985 1.81215 1.07532 1.07621 1.12036 1.20003 0.80275 0.84508 0.83794 1.90808 1.36940 1.25546 1.85930 1.47528 1.51477 1.29329 1.04869 1.22210 0.94818 0.86895 1.04457 1.22069 0.94831 0.95890 0.83850 0.85403 1.22192 1.00221 0.98945 0.80850 1.48359 1.48042 1.34551 1.05339 1.20098 0.79993 0.81551 0.84414 1.90731 1.33719 1.27848 1.85915 1.23515 1.04863 1.05863 0.95530 1.85435 1.60523 1.42096 0.95216 1.22886 1.32803 1.20771 0.91924 0.90839 1.25000 0.94908 0.94880 0.98801 1.70022 1.32001 1.23037 1.25110 0.86107 0.78850 0.78973 0.81510 1.19607 1.20533 1.20541 1.22973 0.93363 0.90938 0.97981 1.23273 0.95831 0.86099 0.92633 0.90146 1.86586 1.54828 1.33016 1.60853 0.90119 0.90889 0.88906 0.91248 0.89767 0.89831 0.90115 0.90279 0.89225 0.89133 0.92170 0.89467 0.90003 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.35 8.78 37.16 0.33 -0.03 16 2 C -0.01 -0.04 2.30 -94.56 -0.22 -0.26 16 3 H 0.14 0.18 7.40 -51.93 -0.38 -0.21 16 4 C 0.22 2.01 13.88 -20.76 -0.29 1.72 16 5 N -0.41 -5.05 18.54 42.16 0.78 -4.27 16 6 C 0.53 4.39 7.06 -10.98 -0.08 4.31 16 7 O -0.52 -6.89 15.40 5.56 0.09 -6.81 16 8 N -0.60 -3.91 2.88 -171.84 -0.50 -4.40 16 9 C 0.06 0.16 7.55 59.85 0.45 0.61 16 10 C 0.14 1.20 3.09 -66.10 -0.20 1.00 16 11 H 0.13 1.43 6.99 -51.93 -0.36 1.06 16 12 C 0.10 1.06 6.45 -2.90 -0.02 1.04 16 13 N -0.62 -7.84 3.33 -170.28 -0.57 -8.41 16 14 C 0.55 9.72 7.87 -10.98 -0.09 9.64 16 15 O -0.51 -11.02 16.19 5.55 0.09 -10.93 16 16 C -0.15 -2.80 5.16 36.01 0.19 -2.62 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -14.75 9.50 30.94 0.29 -14.46 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 22 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.07 0.65 6.43 -2.53 -0.02 0.63 16 27 C 0.08 0.59 3.99 -24.58 -0.10 0.50 16 28 H 0.08 0.44 7.20 -51.93 -0.37 0.07 16 29 O -0.55 -4.07 13.47 -35.23 -0.47 -4.55 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.03 4.53 -51.93 -0.24 -0.21 16 33 H 0.07 0.09 6.89 -51.93 -0.36 -0.27 16 34 H 0.08 0.30 6.26 -51.93 -0.33 -0.03 16 35 H 0.08 0.02 6.01 -51.93 -0.31 -0.30 16 36 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.08 0.76 6.11 -51.93 -0.32 0.44 16 38 H 0.09 1.53 7.85 -51.92 -0.41 1.13 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.09 0.70 7.48 -51.93 -0.39 0.31 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.38 1.20 9.12 45.56 0.42 1.62 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -40.00 374.68 -5.99 -45.98 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.71 Total: -3.56 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 0.16 Total: 4.04 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.45 Total: -41.86 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.30 Total: -22.28 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.00 -5.99 -45.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049387910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.141 kcal (2) G-P(sol) polarization free energy of solvation -39.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds