Wall clock time and date at job start Tue Mar 31 2020 23:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46960 * 2 1 4 4 C 1.47191 * 109.47459 * 119.99791 * 2 1 3 5 5 N 2.60801 * 109.47363 * 119.99854 * 2 1 3 6 6 C 1.50701 * 109.47177 * 240.00173 * 2 1 3 7 7 O 1.21279 * 119.99773 * 247.54700 * 6 2 1 8 8 N 1.34777 * 119.99994 * 67.55078 * 6 2 1 9 9 C 1.47150 * 120.98246 * 4.60366 * 8 6 2 10 10 C 1.53299 * 108.38459 * 230.55757 * 9 8 6 11 11 O 1.42962 * 109.22376 * 307.70098 * 10 9 8 12 12 C 1.42961 * 114.16683 * 62.57837 * 11 10 9 13 13 C 1.47153 * 120.98106 * 184.63024 * 8 6 2 14 14 H 1.08997 * 109.71569 * 249.18340 * 13 8 6 15 15 C 1.53005 * 109.68120 * 9.71819 * 13 8 6 16 16 N 1.46498 * 109.46927 * 286.52904 * 15 13 8 17 17 C 1.34777 * 119.99788 * 184.68344 * 16 15 13 18 18 O 1.21279 * 120.00490 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99972 * 179.97438 * 17 16 15 20 20 S 1.80997 * 109.47244 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00318 * 180.02562 * 20 19 17 22 22 H 1.08009 * 119.99771 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00550 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00255 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99601 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47039 * 90.00295 * 25 23 21 27 27 H 1.48504 * 109.47087 * 209.99847 * 25 23 21 28 28 H 1.48497 * 109.47170 * 330.00295 * 25 23 21 29 29 H 1.09000 * 109.47752 * 53.21545 * 1 2 3 30 30 H 1.09000 * 109.47131 * 173.21295 * 1 2 3 31 31 H 1.09005 * 109.47306 * 293.20944 * 1 2 3 32 32 H 1.09007 * 109.68036 * 110.83927 * 9 8 6 33 33 H 1.08996 * 109.71019 * 350.30331 * 9 8 6 34 34 H 1.09000 * 109.50886 * 187.77848 * 10 9 8 35 35 H 1.09000 * 109.51101 * 67.62617 * 10 9 8 36 36 H 1.08998 * 109.51524 * 177.49335 * 12 11 10 37 37 H 1.09004 * 109.55457 * 57.37220 * 12 11 10 38 38 H 1.09003 * 109.46798 * 166.53135 * 15 13 8 39 39 H 1.08999 * 109.47026 * 46.52711 * 15 13 8 40 40 H 0.97001 * 120.00347 * 4.68750 * 16 15 13 41 41 H 1.09003 * 109.47676 * 300.00117 * 19 17 16 42 42 H 1.08999 * 109.46880 * 60.00449 * 19 17 16 43 43 H 0.97007 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0207 -0.6938 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.6126 -1.7700 -1.1244 8 7 1.8367 -0.1681 -2.4487 9 6 1.2256 1.1624 -2.5964 10 6 0.0808 1.0588 -3.6107 11 8 0.5666 0.4467 -4.8079 12 6 1.0338 -0.8929 -4.6324 13 6 2.2274 -0.8892 -3.6705 14 1 3.0745 -0.3877 -4.1385 15 6 2.6105 -2.3283 -3.3192 16 7 3.9136 -2.3371 -2.6497 17 6 4.4994 -3.5082 -2.3309 18 8 3.9481 -4.5548 -2.5985 19 6 5.8401 -3.5173 -1.6427 20 16 6.3572 -5.2272 -1.3515 21 6 7.9064 -4.9479 -0.5599 22 1 8.2546 -3.9388 -0.3955 23 6 8.6792 -6.0245 -0.1474 24 7 9.8367 -5.8158 0.4435 25 14 8.0765 -7.7698 -0.4310 26 1 8.5561 -8.2506 -1.7517 27 1 8.6026 -8.6551 0.6389 28 1 6.5919 -7.7910 -0.4058 29 1 -0.3634 0.6153 -0.8230 30 1 -0.3633 -1.0205 -0.1214 31 1 -0.3634 0.4050 0.9445 32 1 1.9717 1.8711 -2.9561 33 1 0.8354 1.4964 -1.6351 34 1 -0.2952 2.0562 -3.8384 35 1 -0.7227 0.4527 -3.1921 36 1 1.3433 -1.2997 -5.5951 37 1 0.2341 -1.5069 -4.2180 38 1 2.6667 -2.9223 -4.2315 39 1 1.8579 -2.7528 -2.6549 40 1 4.3547 -1.5001 -2.4359 41 1 6.5757 -3.0181 -2.2733 42 1 5.7630 -2.9935 -0.6899 43 1 10.3766 -6.5683 0.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061317895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:20 Heat of formation + Delta-G solvation = -41.748250 kcal Electronic energy + Delta-G solvation = -28022.947391 eV Core-core repulsion = 24003.835564 eV Total energy + Delta-G solvation = -4019.111828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54699 -39.02846 -38.84904 -36.92845 -35.49418 -35.14721 -33.20223 -32.35396 -32.03661 -29.61211 -28.59035 -25.96951 -25.73060 -25.46970 -23.42031 -23.04226 -20.42136 -20.09196 -18.13899 -18.04768 -17.57867 -17.01189 -16.66398 -16.19069 -16.14790 -15.75717 -15.57019 -15.14699 -15.04556 -14.86754 -14.71115 -14.37242 -13.69061 -13.50167 -13.40277 -13.22705 -13.05444 -13.00338 -12.91698 -12.72877 -12.66467 -12.29075 -12.04542 -11.92540 -11.88907 -11.66284 -11.39166 -11.17421 -10.93102 -10.81071 -10.48830 -9.81432 -9.73352 -9.29552 -9.13096 -8.91861 -8.43926 -8.37792 -6.79516 -6.20689 -3.90433 1.95444 2.02358 2.55695 2.68913 2.90460 3.16285 3.27500 3.39117 3.40646 3.46265 3.58653 3.77375 3.83565 4.11306 4.22848 4.32265 4.39251 4.41291 4.41738 4.44886 4.55325 4.61692 4.82607 4.89336 4.92100 5.02097 5.06128 5.16867 5.18424 5.19998 5.34923 5.43520 5.52537 5.79228 5.91833 5.99516 6.18446 6.45763 6.67890 6.76835 7.32277 7.62239 7.85377 8.02766 8.50113 8.77830 9.26040 10.88808 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.002949 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.635996 B = 9493.384289 C =10615.785626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 H 0.135 0.865 4 C 0.208 3.792 5 N -0.394 5.394 6 C 0.508 3.492 7 O -0.479 6.479 8 N -0.614 5.614 9 C 0.064 3.936 10 C 0.044 3.956 11 O -0.374 6.374 12 C 0.056 3.944 13 C 0.103 3.897 14 H 0.093 0.907 15 C 0.137 3.863 16 N -0.700 5.700 17 C 0.538 3.462 18 O -0.530 6.530 19 C -0.119 4.119 20 S -0.143 6.143 21 C -0.518 4.518 22 H 0.086 0.914 23 C 0.094 3.906 24 N -0.883 5.883 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.393 0.607 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.003 22.675 -9.513 35.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 H 0.152 0.848 4 C -0.111 4.111 5 N -0.069 5.069 6 C 0.293 3.707 7 O -0.350 6.350 8 N -0.351 5.351 9 C -0.059 4.059 10 C -0.034 4.034 11 O -0.291 6.291 12 C -0.022 4.022 13 C 0.000 4.000 14 H 0.110 0.890 15 C 0.012 3.988 16 N -0.354 5.354 17 C 0.324 3.676 18 O -0.406 6.406 19 C -0.270 4.270 20 S 0.084 5.916 21 C -0.666 4.666 22 H 0.104 0.896 23 C -0.114 4.114 24 N -0.520 5.520 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.227 0.773 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.860 19.534 -8.567 32.757 hybrid contribution 0.794 1.168 0.415 1.472 sum -24.066 20.702 -8.152 32.775 Atomic orbital electron populations 1.21928 0.89726 1.04573 1.04361 1.18795 0.98641 0.99950 0.85952 0.84760 1.27971 0.94520 0.94445 0.94202 1.81303 1.06730 1.06847 1.11988 1.20154 0.80267 0.86675 0.83634 1.91136 1.37798 1.20934 1.85102 1.48061 1.63133 1.18767 1.05150 1.22696 0.97058 0.84402 1.01727 1.23032 0.94775 0.99681 0.85883 1.88026 1.81854 1.27852 1.31396 1.22970 0.94854 0.84131 1.00262 1.22291 0.98626 0.93972 0.85139 0.88953 1.21171 0.87643 0.92792 0.97201 1.45650 1.19880 1.08348 1.61473 1.19991 0.86337 0.83271 0.78035 1.90660 1.65089 1.31535 1.53358 1.23218 0.96218 1.04521 1.03032 1.84718 1.25419 1.03414 1.78089 1.22346 1.02696 0.97594 1.43970 0.89553 1.24711 0.93956 0.99284 0.93420 1.69946 1.11333 1.32170 1.38564 0.86726 0.82205 0.84099 0.78789 1.19220 1.20020 1.15891 0.89871 0.90768 0.90067 0.89721 0.87957 0.87302 0.92203 0.86885 0.91839 0.91041 0.90371 0.77328 0.89054 0.88910 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.79 37.15 0.33 -0.09 16 2 C -0.01 -0.05 2.25 -94.57 -0.21 -0.26 16 3 H 0.13 0.24 7.42 -51.93 -0.39 -0.14 16 4 C 0.21 2.32 13.89 -20.76 -0.29 2.03 16 5 N -0.39 -6.07 18.54 42.16 0.78 -5.29 16 6 C 0.51 4.15 6.60 -10.98 -0.07 4.08 16 7 O -0.48 -6.46 9.75 5.56 0.05 -6.40 16 8 N -0.61 -3.35 3.02 -164.74 -0.50 -3.85 16 9 C 0.06 0.12 5.83 -3.53 -0.02 0.10 16 10 C 0.04 0.10 6.95 37.31 0.26 0.36 16 11 O -0.37 -2.05 10.74 -35.23 -0.38 -2.42 16 12 C 0.06 0.30 6.25 37.31 0.23 0.53 16 13 C 0.10 0.69 3.10 -67.42 -0.21 0.48 16 14 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 15 C 0.14 1.52 4.32 -4.04 -0.02 1.51 16 16 N -0.70 -9.96 3.11 -60.29 -0.19 -10.14 16 17 C 0.54 10.70 7.53 -10.98 -0.08 10.62 16 18 O -0.53 -12.53 15.86 5.56 0.09 -12.44 16 19 C -0.12 -2.60 6.16 36.01 0.22 -2.38 16 20 S -0.14 -3.92 18.55 -107.50 -1.99 -5.91 16 21 C -0.52 -15.88 10.04 30.94 0.31 -15.57 16 22 H 0.09 2.76 8.03 -52.48 -0.42 2.33 16 23 C 0.09 2.91 5.50 -17.43 -0.10 2.81 16 24 N -0.88 -27.84 13.97 55.49 0.78 -27.07 16 25 Si 0.86 22.94 27.74 -169.99 -4.71 18.23 16 26 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.23 -6.34 6.74 56.52 0.38 -5.96 16 29 H 0.08 0.00 5.76 -51.93 -0.30 -0.30 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 32 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 -0.07 4.33 -51.93 -0.23 -0.29 16 34 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.08 1.04 6.59 -51.93 -0.34 0.70 16 40 H 0.39 4.81 7.91 -40.82 -0.32 4.49 16 41 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 42 H 0.09 2.01 8.14 -51.92 -0.42 1.59 16 43 H 0.27 7.88 8.31 -40.82 -0.34 7.55 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -42.22 367.30 -5.98 -48.20 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.80 Total: -2.66 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.35 Total: 4.22 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.87 Total: -46.34 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.24 Total: -21.27 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -1.99 Total: -5.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -42.22 -5.98 -48.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061317895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.451 kcal (2) G-P(sol) polarization free energy of solvation -42.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds