Wall clock time and date at job start Tue Mar 31 2020 23:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47164 * 2 1 4 4 C 1.47202 * 109.47716 * 120.00071 * 2 1 3 5 5 N 2.60800 * 109.47431 * 119.99931 * 2 1 3 6 6 C 1.50705 * 109.47103 * 240.00249 * 2 1 3 7 7 O 1.21280 * 119.99577 * 261.94321 * 6 2 1 8 8 N 1.34777 * 120.00266 * 81.94404 * 6 2 1 9 9 C 1.47147 * 120.97955 * 5.26712 * 8 6 2 10 10 C 1.53718 * 108.16173 * 129.42925 * 9 8 6 11 11 O 1.42962 * 109.14469 * 52.53960 * 10 9 8 12 12 C 1.42960 * 114.16520 * 297.28665 * 11 10 9 13 13 C 1.47145 * 120.98134 * 185.54663 * 8 6 2 14 14 H 1.08997 * 109.68286 * 110.79327 * 13 8 6 15 15 C 1.53005 * 109.68500 * 350.23664 * 13 8 6 16 16 N 1.46499 * 109.46801 * 69.22767 * 15 13 8 17 17 C 1.34774 * 119.99791 * 174.47010 * 16 15 13 18 18 O 1.21280 * 120.00071 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00006 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.47108 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99698 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00318 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99678 * 179.97438 * 21 20 19 24 24 N 1.31635 * 120.00314 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99967 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46931 * 90.00182 * 25 23 21 27 27 H 1.48498 * 109.47256 * 209.99564 * 25 23 21 28 28 H 1.48498 * 109.47161 * 330.00004 * 25 23 21 29 29 H 1.09006 * 109.47028 * 294.82677 * 1 2 3 30 30 H 1.09006 * 109.47200 * 174.82864 * 1 2 3 31 31 H 1.09000 * 109.47481 * 54.82938 * 1 2 3 32 32 H 1.09001 * 109.68499 * 249.21143 * 9 8 6 33 33 H 1.09002 * 109.68567 * 9.76705 * 9 8 6 34 34 H 1.09002 * 109.65664 * 292.57025 * 10 9 8 35 35 H 1.09001 * 109.48387 * 172.39711 * 10 9 8 36 36 H 1.09004 * 109.51635 * 302.65930 * 12 11 10 37 37 H 1.09003 * 109.51245 * 182.50571 * 12 11 10 38 38 H 1.08994 * 109.47264 * 189.22615 * 15 13 8 39 39 H 1.08996 * 109.46960 * 309.23088 * 15 13 8 40 40 H 0.97004 * 120.00498 * 354.46805 * 16 15 13 41 41 H 1.09000 * 109.47262 * 300.00050 * 19 17 16 42 42 H 1.08999 * 109.46911 * 60.00370 * 19 17 16 43 43 H 0.96992 * 120.00458 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0208 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.3732 -1.8723 -1.1632 8 7 2.1027 -0.0545 -2.4058 9 6 1.8048 1.3841 -2.4894 10 6 2.9625 2.0709 -3.2316 11 8 3.1897 1.3970 -4.4718 12 6 3.5938 0.0329 -4.3312 13 6 2.4739 -0.7570 -3.6443 14 1 1.6092 -0.8180 -4.3050 15 6 2.9677 -2.1659 -3.3094 16 7 1.8443 -2.9768 -2.8334 17 6 2.0190 -4.2897 -2.5838 18 8 3.1063 -4.7996 -2.7527 19 6 0.8635 -5.1238 -2.0937 20 16 1.4119 -6.8317 -1.8521 21 6 -0.0927 -7.5603 -1.2953 22 1 -0.9824 -6.9557 -1.1997 23 6 -0.1346 -8.9115 -0.9806 24 7 0.9498 -9.6485 -1.0976 25 14 -1.7298 -9.6841 -0.3910 26 1 -2.4977 -10.1865 -1.5586 27 1 -1.4245 -10.8135 0.5235 28 1 -2.5355 -8.6667 0.3307 29 1 -0.3633 0.4315 0.9327 30 1 -0.3634 -1.0235 -0.0926 31 1 -0.3634 0.5919 -0.8400 32 1 0.8738 1.5351 -3.0358 33 1 1.7133 1.7991 -1.4856 34 1 3.8656 2.0273 -2.6227 35 1 2.7037 3.1119 -3.4250 36 1 4.4991 -0.0182 -3.7264 37 1 3.7883 -0.3925 -5.3158 38 1 3.3935 -2.6235 -4.2023 39 1 3.7295 -2.1086 -2.5319 40 1 0.9747 -2.5689 -2.6980 41 1 0.5007 -4.7218 -1.1476 42 1 0.0604 -5.1004 -2.8302 43 1 0.9204 -10.5928 -0.8781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061317897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:24 Heat of formation + Delta-G solvation = -41.373405 kcal Electronic energy + Delta-G solvation = -28008.030702 eV Core-core repulsion = 23988.935129 eV Total energy + Delta-G solvation = -4019.095573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49420 -39.00443 -38.73019 -36.90545 -35.41645 -35.00844 -33.17545 -32.35386 -32.01803 -29.47085 -28.47571 -25.94208 -25.76393 -25.33211 -23.34666 -22.87429 -20.45339 -20.06935 -18.08736 -18.00876 -17.56989 -16.93395 -16.61775 -16.18637 -16.05053 -15.57033 -15.51959 -15.18046 -14.97561 -14.74030 -14.38231 -14.35434 -13.83111 -13.64045 -13.31202 -13.22268 -12.96172 -12.94062 -12.86432 -12.59144 -12.45543 -12.23157 -12.18217 -11.93507 -11.71029 -11.57642 -11.33407 -11.00782 -10.94803 -10.76326 -10.69797 -9.74073 -9.62821 -9.26633 -9.07096 -8.99405 -8.33035 -8.11980 -6.39243 -6.14031 -3.83051 1.96805 2.06370 2.54199 2.69486 3.12378 3.23383 3.26628 3.32789 3.37506 3.43015 3.45791 3.81971 3.86436 4.14662 4.20174 4.28067 4.39651 4.45435 4.46859 4.49118 4.65735 4.66703 4.93988 5.01849 5.08572 5.13206 5.20227 5.20626 5.25029 5.31497 5.48029 5.55074 5.71345 5.91000 6.01227 6.09078 6.27351 6.50034 6.72214 6.83798 7.31005 7.66026 7.66446 7.92451 8.42578 8.88637 9.30891 10.93476 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002926 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.815479 B = 9568.397253 C =10637.982435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 H 0.131 0.869 4 C 0.210 3.790 5 N -0.399 5.399 6 C 0.504 3.496 7 O -0.474 6.474 8 N -0.615 5.615 9 C 0.069 3.931 10 C 0.044 3.956 11 O -0.374 6.374 12 C 0.055 3.945 13 C 0.104 3.896 14 H 0.092 0.908 15 C 0.136 3.864 16 N -0.705 5.705 17 C 0.538 3.462 18 O -0.526 6.526 19 C -0.148 4.148 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.390 0.610 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 32.235 -5.377 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.148 0.852 4 C -0.110 4.110 5 N -0.073 5.073 6 C 0.288 3.712 7 O -0.344 6.344 8 N -0.353 5.353 9 C -0.053 4.053 10 C -0.034 4.034 11 O -0.292 6.292 12 C -0.023 4.023 13 C 0.000 4.000 14 H 0.110 0.890 15 C 0.011 3.989 16 N -0.358 5.358 17 C 0.324 3.676 18 O -0.401 6.401 19 C -0.299 4.299 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.089 0.911 23 C -0.137 4.137 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.223 0.777 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.722 29.817 -4.353 30.182 hybrid contribution -2.883 0.539 0.618 2.998 sum -1.161 30.356 -3.735 30.607 Atomic orbital electron populations 1.21782 0.89205 1.04867 1.04279 1.18856 0.99097 0.99489 0.85906 0.85162 1.28054 0.94398 0.94303 0.94205 1.81268 1.07265 1.06874 1.11939 1.20123 0.79973 0.87303 0.83780 1.91128 1.44584 1.15289 1.83414 1.48057 1.70259 1.09640 1.07315 1.22681 0.99746 0.80170 1.02743 1.23100 0.97084 0.96904 0.86276 1.88015 1.88591 1.23783 1.28813 1.22973 0.95310 0.81666 1.02324 1.22308 0.99352 0.92734 0.85573 0.88971 1.21205 0.91225 0.86834 0.99622 1.45734 1.12280 1.08844 1.68962 1.20032 0.89715 0.81271 0.76533 1.90670 1.26631 1.71748 1.51084 1.23470 0.99444 1.03671 1.03339 1.85379 1.16727 0.94684 1.86595 1.22875 0.96732 0.97004 1.51560 0.91091 1.24988 0.97369 0.96113 0.95186 1.70025 1.27461 1.07093 1.45778 0.86182 0.82058 0.78729 0.78605 1.20299 1.20785 1.19758 0.90168 0.90502 0.89965 0.89649 0.88413 0.92275 0.87339 0.91857 0.86883 0.91165 0.90056 0.77684 0.89670 0.89782 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 9.12 37.15 0.34 -0.24 16 2 C -0.01 -0.05 2.33 -94.56 -0.22 -0.27 16 3 H 0.13 0.23 6.18 -51.93 -0.32 -0.09 16 4 C 0.21 2.36 13.99 -20.76 -0.29 2.07 16 5 N -0.40 -6.07 18.54 42.15 0.78 -5.29 16 6 C 0.50 4.32 6.23 -10.98 -0.07 4.25 16 7 O -0.47 -6.62 9.89 5.56 0.05 -6.56 16 8 N -0.61 -3.62 3.01 -164.49 -0.50 -4.12 16 9 C 0.07 0.15 6.25 -3.32 -0.02 0.13 16 10 C 0.04 0.13 7.00 37.53 0.26 0.40 16 11 O -0.37 -2.28 10.74 -35.23 -0.38 -2.66 16 12 C 0.06 0.34 6.28 37.31 0.23 0.57 16 13 C 0.10 0.75 3.13 -67.42 -0.21 0.53 16 14 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 15 C 0.14 1.61 4.30 -4.04 -0.02 1.59 16 16 N -0.70 -10.25 3.11 -60.30 -0.19 -10.44 16 17 C 0.54 11.05 7.53 -10.99 -0.08 10.97 16 18 O -0.53 -13.00 15.85 5.56 0.09 -12.92 16 19 C -0.15 -3.28 6.16 36.01 0.22 -3.06 16 20 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 21 C -0.53 -15.91 9.50 30.94 0.29 -15.61 16 22 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -27.16 13.22 55.49 0.73 -26.43 16 25 Si 0.92 22.18 29.55 -169.99 -5.02 17.16 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.12 7.86 -51.93 -0.41 -0.29 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.10 -0.04 5.52 -51.93 -0.29 -0.32 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.08 1.17 6.61 -51.93 -0.34 0.83 16 40 H 0.39 4.72 7.66 -40.82 -0.31 4.41 16 41 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 42 H 0.08 1.69 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -42.08 372.60 -6.54 -48.63 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.87 Total: -2.42 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.35 Total: 3.39 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.83 Total: -46.27 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.24 Total: -22.14 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -42.08 -6.54 -48.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061317897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.252 kcal (2) G-P(sol) polarization free energy of solvation -42.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds