Wall clock time and date at job start Tue Mar 31 2020 23:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47212 * 2 1 4 4 C 1.47202 * 109.46865 * 240.00188 * 2 1 3 5 5 N 2.60804 * 109.46983 * 240.00172 * 2 1 3 6 6 C 1.50701 * 109.47207 * 120.00445 * 2 1 3 7 7 O 1.21281 * 120.00043 * 120.00032 * 6 2 1 8 8 N 1.34778 * 119.99623 * 300.00113 * 6 2 1 9 9 C 1.46501 * 119.99931 * 180.02562 * 8 6 2 10 10 C 1.52998 * 109.47277 * 185.43256 * 9 8 6 11 11 H 1.09003 * 109.67693 * 300.56115 * 10 9 8 12 12 C 1.53297 * 109.71098 * 61.09674 * 10 9 8 13 13 O 1.42964 * 109.22179 * 172.04563 * 12 10 9 14 14 C 1.42965 * 114.16637 * 297.41534 * 13 12 10 15 15 C 1.52886 * 109.29558 * 62.44808 * 14 13 12 16 16 N 1.47148 * 108.60797 * 307.93842 * 15 14 13 17 17 C 1.34777 * 120.98160 * 230.49670 * 16 15 14 18 18 O 1.21282 * 120.00436 * 174.65806 * 17 16 15 19 19 C 1.50704 * 119.99720 * 354.66553 * 17 16 15 20 20 S 1.81003 * 109.46964 * 179.97438 * 19 17 16 21 21 C 1.76206 * 99.99901 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00014 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99852 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99651 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00076 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47598 * 89.99947 * 25 23 21 27 27 H 1.48503 * 109.47435 * 210.00102 * 25 23 21 28 28 H 1.48504 * 109.47152 * 330.00013 * 25 23 21 29 29 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47019 * 299.99308 * 1 2 3 31 31 H 1.08997 * 109.47180 * 59.99868 * 1 2 3 32 32 H 0.96996 * 120.00296 * 359.97438 * 8 6 2 33 33 H 1.09005 * 109.47015 * 65.42952 * 9 8 6 34 34 H 1.09004 * 109.46505 * 305.43168 * 9 8 6 35 35 H 1.08997 * 109.50945 * 291.96673 * 12 10 9 36 36 H 1.08995 * 109.51570 * 52.11897 * 12 10 9 37 37 H 1.08996 * 109.51351 * 182.50473 * 14 13 12 38 38 H 1.09002 * 109.50884 * 302.61104 * 14 13 12 39 39 H 1.08997 * 109.61754 * 188.11276 * 15 14 13 40 40 H 1.09002 * 109.51838 * 67.70215 * 15 14 13 41 41 H 1.09004 * 109.47064 * 59.99896 * 19 17 16 42 42 H 1.09002 * 109.47184 * 299.99796 * 19 17 16 43 43 H 0.97003 * 119.99835 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7105 1.2304 7 8 2.7297 -1.6966 1.1191 8 7 1.7067 -0.2501 2.4545 9 6 2.1955 -0.9404 3.6507 10 6 1.5770 -0.3025 4.8962 11 1 1.8480 0.7523 4.9415 12 6 0.0512 -0.4418 4.8450 13 8 -0.5028 -0.0125 6.0910 14 6 -0.0928 -0.7956 7.2146 15 6 1.4219 -0.6787 7.3863 16 7 2.0657 -0.9920 6.1008 17 6 3.0697 -1.8882 6.0280 18 8 3.5226 -2.2052 4.9485 19 6 3.6296 -2.4965 7.2880 20 16 4.9552 -3.6531 6.8622 21 6 5.4143 -4.1989 8.4735 22 1 4.9027 -3.8100 9.3415 23 6 6.4334 -5.1286 8.6270 24 7 6.7760 -5.5367 9.8307 25 14 7.3177 -5.8017 7.1257 26 1 8.4869 -4.9414 6.8126 27 1 7.7812 -7.1851 7.4029 28 1 6.3880 -5.8140 5.9677 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1494 0.5387 2.5436 33 1 3.2812 -0.8565 3.7005 34 1 1.9142 -1.9924 3.6034 35 1 -0.3439 0.1761 4.0387 36 1 -0.2135 -1.4844 4.6688 37 1 -0.5915 -0.4322 8.1131 38 1 -0.3589 -1.8394 7.0474 39 1 1.7593 -1.3824 8.1472 40 1 1.6769 0.3376 7.6867 41 1 2.8391 -3.0290 7.8168 42 1 4.0266 -1.7076 7.9270 43 1 7.4885 -6.1862 9.9381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061845695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:29 Heat of formation + Delta-G solvation = -65.697096 kcal Electronic energy + Delta-G solvation = -27386.508942 eV Core-core repulsion = 23366.358614 eV Total energy + Delta-G solvation = -4020.150328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99056 -40.04818 -38.40690 -36.90535 -35.60138 -34.82566 -33.84647 -32.48190 -31.89132 -29.83950 -27.87043 -26.59415 -25.68973 -25.54197 -23.27922 -22.38101 -21.27913 -19.58878 -18.54585 -17.75617 -17.57779 -17.05598 -16.65471 -16.54771 -15.91530 -15.71503 -15.50268 -15.20605 -15.00481 -14.94868 -14.38239 -14.17431 -13.93500 -13.79550 -13.55668 -13.43176 -13.09849 -12.95232 -12.83454 -12.69544 -12.43474 -12.29209 -12.17471 -11.95545 -11.88679 -11.62772 -11.29114 -11.22173 -11.03568 -10.66733 -10.54045 -10.18410 -9.88497 -9.45681 -9.16621 -9.03921 -8.66126 -8.55046 -6.97804 -6.33204 -4.05821 2.11486 2.22889 2.46077 2.52668 2.69388 2.91475 3.16292 3.31386 3.38054 3.43668 3.49340 3.52749 4.21685 4.27168 4.29638 4.32006 4.34034 4.52730 4.57368 4.65145 4.67300 4.81549 4.89080 4.96680 5.06066 5.08189 5.11490 5.12877 5.24776 5.38524 5.46776 5.51116 5.60994 5.80603 5.85341 5.93372 6.05497 6.33769 6.66466 7.05387 7.16488 7.28069 7.87662 7.89603 8.20846 8.36279 9.13039 10.75844 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003145 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.293164 B = 8900.820131 C =11334.099547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 H 0.141 0.859 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.519 3.481 7 O -0.513 6.513 8 N -0.730 5.730 9 C 0.124 3.876 10 C 0.104 3.896 11 H 0.086 0.914 12 C 0.050 3.950 13 O -0.378 6.378 14 C 0.045 3.955 15 C 0.074 3.926 16 N -0.618 5.618 17 C 0.533 3.467 18 O -0.501 6.501 19 C -0.123 4.123 20 S -0.138 6.138 21 C -0.523 4.523 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.879 5.879 25 Si 0.855 3.145 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.395 0.605 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.527 18.328 -10.019 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.086 5.086 6 C 0.302 3.698 7 O -0.386 6.386 8 N -0.385 5.385 9 C 0.002 3.998 10 C 0.000 4.000 11 H 0.104 0.896 12 C -0.028 4.028 13 O -0.296 6.296 14 C -0.032 4.032 15 C -0.049 4.049 16 N -0.356 5.356 17 C 0.322 3.678 18 O -0.374 6.374 19 C -0.273 4.273 20 S 0.089 5.911 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.516 5.516 25 Si 0.680 3.320 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.230 0.770 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.734 16.312 -12.933 27.347 hybrid contribution -0.195 0.406 1.504 1.570 sum -17.929 16.719 -11.429 27.048 Atomic orbital electron populations 1.21806 0.89640 1.04431 1.04326 1.18859 0.98709 1.00225 0.85791 0.84190 1.28068 0.93907 0.94019 0.93983 1.81206 1.07472 1.07603 1.12270 1.19887 0.81040 0.84967 0.83927 1.90877 1.36182 1.25353 1.86219 1.46178 1.54224 1.32127 1.06011 1.22299 1.01010 0.96471 0.80025 1.22087 0.94700 0.97419 0.85789 0.89609 1.23091 0.91694 1.01045 0.86963 1.87958 1.70041 1.56283 1.15304 1.22968 0.93777 0.96393 0.90061 1.22401 0.93429 1.03172 0.85893 1.48125 1.36429 1.43351 1.07677 1.20463 0.78234 0.77753 0.91398 1.90757 1.58983 1.58983 1.28675 1.23333 1.03219 1.03108 0.97671 1.84911 1.41254 1.50874 1.14107 1.22287 1.23887 1.30147 0.90703 0.89365 1.24700 0.95534 0.94772 0.96203 1.69933 1.29366 1.30865 1.21393 0.86758 0.81884 0.79199 0.84164 1.19165 1.19876 1.15877 0.90908 0.89931 0.90221 0.77042 0.87465 0.89435 0.87900 0.92076 0.87246 0.92236 0.87853 0.90214 0.88472 0.88354 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 9.04 37.16 0.34 -0.04 16 2 C -0.01 -0.06 3.10 -94.56 -0.29 -0.36 16 3 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 4 C 0.22 2.30 13.88 -20.76 -0.29 2.02 16 5 N -0.41 -5.69 18.54 42.15 0.78 -4.91 16 6 C 0.52 5.10 7.14 -10.98 -0.08 5.02 16 7 O -0.51 -8.38 16.02 5.56 0.09 -8.29 16 8 N -0.73 -5.33 5.15 -60.29 -0.31 -5.64 16 9 C 0.12 1.40 3.56 -4.04 -0.01 1.39 16 10 C 0.10 0.94 3.22 -67.42 -0.22 0.72 16 11 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 12 C 0.05 0.36 6.01 37.31 0.22 0.58 16 13 O -0.38 -3.11 10.74 -35.23 -0.38 -3.49 16 14 C 0.05 0.33 6.97 37.10 0.26 0.59 16 15 C 0.07 0.63 6.49 -3.75 -0.02 0.61 16 16 N -0.62 -7.03 3.03 -164.99 -0.50 -7.53 16 17 C 0.53 8.55 7.64 -10.98 -0.08 8.47 16 18 O -0.50 -9.67 11.42 5.56 0.06 -9.61 16 19 C -0.12 -2.20 4.62 36.01 0.17 -2.04 16 20 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 21 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 22 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.18 13.97 55.49 0.78 -25.40 16 25 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.00 7.56 -51.93 -0.39 -0.39 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.40 1.14 7.08 -40.82 -0.29 0.85 16 33 H 0.11 1.62 6.25 -51.93 -0.32 1.30 16 34 H 0.09 1.28 7.28 -51.93 -0.38 0.90 16 35 H 0.10 0.41 7.31 -51.93 -0.38 0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.87 6.07 -51.93 -0.32 0.56 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 1.60 7.44 -51.91 -0.39 1.21 16 42 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -39.29 371.93 -6.23 -45.52 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.85 Total: -3.17 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 0.20 Total: 5.30 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.75 Total: -43.49 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.23 Total: -21.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.29 -6.23 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061845695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.180 kcal (2) G-P(sol) polarization free energy of solvation -39.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds