Wall clock time and date at job start Tue Mar 31 2020 23:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47434 * 2 1 4 4 C 1.47203 * 109.46688 * 119.99965 * 2 1 3 5 5 N 2.60807 * 109.46805 * 119.99962 * 2 1 3 6 6 C 1.50704 * 109.46956 * 239.99271 * 2 1 3 7 7 O 1.21278 * 120.00031 * 240.00171 * 6 2 1 8 8 N 1.34774 * 119.99706 * 60.00666 * 6 2 1 9 9 C 1.46499 * 120.00041 * 179.97438 * 8 6 2 10 10 C 1.53002 * 109.47064 * 185.43751 * 9 8 6 11 11 H 1.08994 * 109.67644 * 300.55611 * 10 9 8 12 12 C 1.53295 * 109.71372 * 61.09648 * 10 9 8 13 13 O 1.42968 * 109.22061 * 172.04425 * 12 10 9 14 14 C 1.42961 * 114.16524 * 297.41407 * 13 12 10 15 15 C 1.52887 * 109.29544 * 62.45350 * 14 13 12 16 16 N 1.47149 * 108.60766 * 307.93029 * 15 14 13 17 17 C 1.34767 * 120.98482 * 230.50303 * 16 15 14 18 18 O 1.21287 * 120.00116 * 174.66420 * 17 16 15 19 19 C 1.50699 * 120.00091 * 354.65710 * 17 16 15 20 20 S 1.80999 * 109.47266 * 180.02562 * 19 17 16 21 21 C 1.76211 * 99.99990 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99531 * 0.02562 * 21 20 19 23 23 C 1.38796 * 119.99894 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00162 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99722 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47097 * 270.00275 * 25 23 21 27 27 H 1.48505 * 109.47088 * 150.00337 * 25 23 21 28 28 H 1.48497 * 109.47353 * 30.00600 * 25 23 21 29 29 H 1.08997 * 109.47303 * 300.00392 * 1 2 3 30 30 H 1.09004 * 109.46782 * 60.00264 * 1 2 3 31 31 H 1.08995 * 109.47434 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99756 * 0.02562 * 8 6 2 33 33 H 1.09001 * 109.47049 * 65.43383 * 9 8 6 34 34 H 1.09006 * 109.46947 * 305.43020 * 9 8 6 35 35 H 1.09001 * 109.51446 * 291.96729 * 12 10 9 36 36 H 1.08996 * 109.51265 * 52.11875 * 12 10 9 37 37 H 1.09000 * 109.51304 * 182.50524 * 14 13 12 38 38 H 1.09003 * 109.51940 * 302.61030 * 14 13 12 39 39 H 1.09005 * 109.61912 * 188.11044 * 15 14 13 40 40 H 1.08994 * 109.52479 * 67.69661 * 15 14 13 41 41 H 1.09004 * 109.46915 * 60.00323 * 19 17 16 42 42 H 1.09001 * 109.47354 * 300.00403 * 19 17 16 43 43 H 0.97002 * 120.00180 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3992 -1.2295 2.1295 6 6 2.0323 -0.7106 -1.2304 7 8 2.7295 -1.6967 -1.1190 8 7 1.7068 -0.2502 -2.4545 9 6 2.1955 -0.9405 -3.6507 10 6 1.8001 -0.1447 -4.8962 11 1 0.7153 -0.0494 -4.9417 12 6 2.4390 1.2478 -4.8445 13 8 2.2187 1.9132 -6.0905 14 6 2.8212 1.2663 -7.2140 15 6 2.2070 -0.1231 -7.3862 16 7 2.2880 -0.8349 -6.1008 17 6 2.7991 -2.0797 -6.0281 18 8 2.9471 -2.6124 -4.9485 19 6 3.1867 -2.8100 -7.2881 20 16 3.8351 -4.4454 -6.8624 21 6 4.1990 -5.0591 -8.4736 22 1 4.0047 -4.4462 -9.3415 23 6 4.7363 -6.3296 -8.6273 24 7 4.9735 -7.0762 -7.5696 25 14 5.1214 -6.9803 -10.3354 26 1 3.9326 -7.6881 -10.8751 27 1 6.2664 -7.9229 -10.2595 28 1 5.4713 -5.8475 -11.2295 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1495 0.5388 -2.5435 33 1 1.7551 -1.9364 -3.7008 34 1 3.2812 -1.0252 -3.6032 35 1 1.9875 1.8259 -4.0382 36 1 3.5102 1.1505 -4.6680 37 1 2.6447 1.8576 -8.1125 38 1 3.8940 1.1699 -7.0466 39 1 2.7587 -0.6754 -8.1470 40 1 1.1639 -0.0256 -7.6867 41 1 3.9521 -2.2416 -7.8166 42 1 2.3109 -2.9218 -7.9273 43 1 4.7732 -6.7384 -6.6826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061845696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:33 Heat of formation + Delta-G solvation = -71.065310 kcal Electronic energy + Delta-G solvation = -27327.929730 eV Core-core repulsion = 23307.546619 eV Total energy + Delta-G solvation = -4020.383111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98047 -40.03256 -38.40057 -36.88501 -35.58812 -34.81854 -33.82926 -32.57510 -31.87810 -29.83530 -27.86605 -26.60501 -25.54664 -24.88274 -23.27782 -22.35437 -21.25951 -19.56530 -18.60323 -18.15359 -17.55022 -17.19048 -16.69176 -16.46994 -15.97186 -15.83430 -15.43389 -15.19135 -14.97124 -14.53532 -14.35104 -14.11722 -13.88894 -13.79965 -13.52579 -13.43634 -13.07052 -12.94200 -12.69020 -12.49636 -12.40683 -12.24557 -12.15088 -12.00043 -11.90367 -11.85138 -11.59846 -11.22850 -10.94538 -10.54670 -10.22493 -10.16177 -9.63095 -9.44481 -9.15350 -9.05389 -8.65449 -8.27555 -6.73274 -6.66149 -4.05467 2.13306 2.24839 2.50441 2.54747 2.71152 3.03584 3.26078 3.34196 3.36416 3.37814 3.46731 3.52638 4.17552 4.22866 4.30531 4.35404 4.36631 4.53675 4.57143 4.65861 4.78780 4.83948 4.91061 5.00295 5.10114 5.15339 5.18306 5.24650 5.28873 5.40872 5.49864 5.51133 5.60923 5.81690 5.85824 5.94328 6.07019 6.34964 6.65567 7.07080 7.17519 7.30068 7.86546 7.89664 8.22960 8.45721 9.22420 10.77670 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.002838 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.270447 B = 9862.482262 C =11957.741775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 H 0.140 0.860 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.519 3.481 7 O -0.512 6.512 8 N -0.730 5.730 9 C 0.124 3.876 10 C 0.105 3.895 11 H 0.086 0.914 12 C 0.050 3.950 13 O -0.378 6.378 14 C 0.046 3.954 15 C 0.075 3.925 16 N -0.618 5.618 17 C 0.533 3.467 18 O -0.499 6.499 19 C -0.129 4.129 20 S -0.112 6.112 21 C -0.609 4.609 22 H 0.066 0.934 23 C 0.036 3.964 24 N -0.882 5.882 25 Si 1.087 2.913 26 H -0.284 1.284 27 H -0.279 1.279 28 H -0.287 1.287 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.395 0.605 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 24.792 4.709 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.301 3.699 7 O -0.385 6.385 8 N -0.386 5.386 9 C 0.002 3.998 10 C 0.000 4.000 11 H 0.104 0.896 12 C -0.028 4.028 13 O -0.296 6.296 14 C -0.032 4.032 15 C -0.048 4.048 16 N -0.357 5.357 17 C 0.321 3.679 18 O -0.372 6.372 19 C -0.280 4.280 20 S 0.114 5.886 21 C -0.757 4.757 22 H 0.084 0.916 23 C -0.175 4.175 24 N -0.517 5.517 25 Si 0.913 3.087 26 H -0.210 1.210 27 H -0.205 1.205 28 H -0.213 1.213 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.229 0.771 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.865 21.267 6.955 24.454 hybrid contribution -1.055 2.421 -1.223 2.910 sum -10.920 23.688 5.732 26.706 Atomic orbital electron populations 1.21808 0.89606 1.04530 1.04291 1.18855 0.98767 1.00119 0.85783 0.84245 1.28069 0.93918 0.94035 0.93989 1.81207 1.07492 1.07526 1.12278 1.19897 0.81055 0.84992 0.83929 1.90882 1.36307 1.25149 1.86205 1.46176 1.54039 1.32332 1.06012 1.22293 1.01832 0.95640 0.80019 1.22085 0.99364 0.92705 0.85819 0.89632 1.23100 1.00710 0.92076 0.86937 1.87956 1.76203 1.50099 1.15315 1.22962 0.97196 0.92949 0.90077 1.22382 1.02852 0.93638 0.85964 1.48136 1.64332 1.15552 1.07634 1.20466 0.75944 0.80018 0.91430 1.90762 1.51640 1.66130 1.28658 1.23363 1.04363 1.02645 0.97640 1.84938 1.81598 1.08261 1.13806 1.23705 1.53677 1.06820 0.91485 0.91572 1.26059 0.93178 0.92396 1.05892 1.70772 1.42527 1.38610 0.99742 0.83289 0.77153 0.75722 0.72540 1.21028 1.20482 1.21297 0.90245 0.89905 0.90850 0.77063 0.87465 0.89469 0.87837 0.92081 0.87277 0.92272 0.88008 0.90274 0.88976 0.88825 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.48 9.04 37.16 0.34 -0.14 16 2 C -0.01 -0.06 3.10 -94.56 -0.29 -0.36 16 3 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 4 C 0.22 2.38 13.88 -20.76 -0.29 2.09 16 5 N -0.41 -5.83 18.54 42.16 0.78 -5.05 16 6 C 0.52 5.34 7.14 -10.98 -0.08 5.26 16 7 O -0.51 -8.66 16.02 5.56 0.09 -8.57 16 8 N -0.73 -5.68 5.15 -60.29 -0.31 -5.99 16 9 C 0.12 1.48 3.56 -4.04 -0.01 1.47 16 10 C 0.10 0.99 3.22 -67.42 -0.22 0.78 16 11 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 12 C 0.05 0.38 6.01 37.31 0.22 0.60 16 13 O -0.38 -3.24 10.74 -35.23 -0.38 -3.62 16 14 C 0.05 0.35 6.97 37.10 0.26 0.60 16 15 C 0.07 0.66 6.49 -3.75 -0.02 0.64 16 16 N -0.62 -7.40 3.03 -164.99 -0.50 -7.90 16 17 C 0.53 9.01 7.64 -10.99 -0.08 8.93 16 18 O -0.50 -10.14 11.42 5.55 0.06 -10.08 16 19 C -0.13 -2.43 4.62 36.01 0.17 -2.27 16 20 S -0.11 -2.94 19.60 -107.50 -2.11 -5.05 16 21 C -0.61 -17.13 9.50 30.94 0.29 -16.83 16 22 H 0.07 1.77 7.80 -52.48 -0.41 1.36 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 24 N -0.88 -27.33 13.67 55.49 0.76 -26.57 16 25 Si 1.09 24.63 29.92 -169.99 -5.09 19.54 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.06 7.57 -51.93 -0.39 -0.33 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.40 1.30 7.08 -40.82 -0.29 1.01 16 33 H 0.11 1.70 6.25 -51.93 -0.32 1.38 16 34 H 0.09 1.33 7.28 -51.93 -0.38 0.96 16 35 H 0.10 0.46 7.31 -51.93 -0.38 0.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.90 6.07 -51.93 -0.32 0.58 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.60 7.44 -51.91 -0.39 1.21 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.28 8.83 7.13 -40.82 -0.29 8.54 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -40.34 373.26 -6.65 -46.99 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.77 Total: -1.03 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 0.18 Total: 1.70 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.73 Total: -45.51 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.23 Total: -22.27 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.11 Total: -5.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.34 -6.65 -46.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061845696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.078 kcal (2) G-P(sol) polarization free energy of solvation -40.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds