Wall clock time and date at job start Tue Mar 31 2020 23:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.47200 * 109.47229 * 239.99296 * 2 1 3 5 5 N 2.60799 * 109.47086 * 239.99564 * 2 1 3 6 6 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 7 7 O 1.21283 * 120.00262 * 120.00231 * 6 2 1 8 8 N 1.34777 * 119.99928 * 299.72137 * 6 2 1 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 2 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.50894 * 60.09975 * 10 9 8 12 12 C 1.53290 * 109.51425 * 180.25613 * 10 9 8 13 13 N 1.47160 * 108.38569 * 172.23225 * 12 10 9 14 14 C 1.34771 * 120.98571 * 129.48561 * 13 12 10 15 15 O 1.21275 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99855 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.46891 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99659 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00180 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99549 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99791 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00519 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47051 * 89.99443 * 22 20 18 24 24 H 1.48498 * 109.47367 * 210.00051 * 22 20 18 25 25 H 1.48509 * 109.46796 * 329.99646 * 22 20 18 26 26 C 1.47156 * 118.03104 * 309.46205 * 13 12 10 27 27 C 1.53296 * 108.38375 * 50.53564 * 26 13 12 28 28 O 1.42958 * 109.51334 * 300.00708 * 10 9 8 29 29 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 31 31 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 8 6 2 33 33 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 34 34 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 35 35 H 1.09004 * 109.68602 * 291.94919 * 12 10 9 36 36 H 1.08993 * 109.68681 * 52.50546 * 12 10 9 37 37 H 1.08994 * 109.47536 * 299.99947 * 16 14 13 38 38 H 1.08996 * 109.46943 * 60.00034 * 16 14 13 39 39 H 0.97000 * 120.00301 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.68162 * 290.81538 * 26 13 12 41 41 H 1.08994 * 109.71041 * 170.27773 * 26 13 12 42 42 H 1.09005 * 109.51287 * 187.77648 * 27 26 13 43 43 H 1.08997 * 109.55620 * 67.64861 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.7295 -1.6965 1.1194 8 7 1.7112 -0.2466 2.4546 9 6 2.2044 -0.9336 3.6508 10 6 1.6985 -0.2094 4.9000 11 1 0.6085 -0.2114 4.9056 12 6 2.2194 -0.9238 6.1522 13 7 1.8787 -0.1072 7.3281 14 6 1.2617 -0.6513 8.3956 15 8 0.9786 -1.8305 8.3965 16 6 0.9237 0.2057 9.5882 17 16 0.1066 -0.8069 10.8465 18 6 -0.1681 0.4119 12.0890 19 1 0.1503 1.4309 11.9256 20 6 -0.7947 0.0626 13.2772 21 7 -0.9995 0.9731 14.2056 22 14 -1.3462 -1.6996 13.5595 23 1 -0.2481 -2.4649 14.2026 24 1 -2.5398 -1.7094 14.4428 25 1 -1.6891 -2.3256 12.2571 26 6 2.2321 1.3211 7.3039 27 6 1.7107 1.9262 5.9955 28 8 2.1734 1.1390 4.8955 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1535 0.5421 2.5436 33 1 1.8416 -1.9614 3.6551 34 1 3.2944 -0.9332 3.6465 35 1 1.7501 -1.9040 6.2377 36 1 3.3012 -1.0388 6.0861 37 1 1.8384 0.6308 10.0012 38 1 0.2560 1.0102 9.2800 39 1 -1.4371 0.7289 15.0362 40 1 3.3153 1.4322 7.3537 41 1 1.7718 1.8281 8.1519 42 1 2.0800 2.9467 5.8937 43 1 0.6208 1.9327 6.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:17 Heat of formation + Delta-G solvation = -84.115169 kcal Electronic energy + Delta-G solvation = -26419.188753 eV Core-core repulsion = 22398.239758 eV Total energy + Delta-G solvation = -4020.948995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79261 -40.24017 -38.49342 -37.05451 -35.57202 -34.79543 -33.98862 -32.50806 -32.19719 -29.78731 -28.61345 -26.32604 -25.71679 -25.37606 -23.74127 -21.91343 -21.49517 -19.51588 -18.71263 -17.88218 -17.74060 -17.23039 -16.99586 -16.42227 -16.04114 -15.73858 -15.62283 -15.13106 -15.06366 -15.02242 -14.56689 -14.30551 -13.92120 -13.79754 -13.61586 -13.41414 -13.24849 -13.13629 -12.87319 -12.85636 -12.69867 -12.39486 -12.23718 -12.06256 -12.03640 -11.72261 -11.33001 -11.12000 -11.06965 -10.69164 -10.53197 -10.41914 -9.92980 -9.65425 -9.63790 -9.07183 -8.75194 -8.58532 -7.01011 -6.35766 -4.08656 1.96691 1.98301 2.34642 2.47683 2.72747 2.81993 3.03131 3.15450 3.27851 3.28082 3.44517 3.49188 4.06082 4.20524 4.24913 4.27617 4.36980 4.40361 4.45377 4.58330 4.63770 4.80262 4.87723 4.92191 5.00090 5.00781 5.03454 5.11942 5.20054 5.33739 5.37667 5.41562 5.48422 5.58625 5.63065 5.79856 5.85081 6.23299 6.62219 6.83794 7.10488 7.21391 7.59264 7.86964 8.23327 8.33831 9.10232 10.73274 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.001876 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.845703 B =14922.522356 C =15215.275031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.143 0.857 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.523 3.477 7 O -0.527 6.527 8 N -0.715 5.715 9 C 0.131 3.869 10 C 0.066 3.934 11 H 0.074 0.926 12 C 0.088 3.912 13 N -0.622 5.622 14 C 0.536 3.464 15 O -0.514 6.514 16 C -0.122 4.122 17 S -0.141 6.141 18 C -0.523 4.523 19 H 0.088 0.912 20 C 0.097 3.903 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C 0.071 3.929 27 C 0.049 3.951 28 O -0.375 6.375 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.408 0.592 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 5.700 -24.734 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 H 0.160 0.840 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.306 3.694 7 O -0.403 6.403 8 N -0.367 5.367 9 C 0.007 3.993 10 C 0.007 3.993 11 H 0.092 0.908 12 C -0.036 4.036 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.388 6.388 16 C -0.273 4.273 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.515 5.515 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.053 4.053 27 C -0.028 4.028 28 O -0.294 6.294 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.448 2.524 -26.136 26.631 hybrid contribution -0.426 1.456 1.179 1.922 sum 4.022 3.981 -24.957 25.590 Atomic orbital electron populations 1.21824 0.89422 1.04499 1.04609 1.18824 0.98880 1.00268 0.85483 0.83978 1.28065 0.93885 0.94000 0.94006 1.81213 1.07580 1.07705 1.12042 1.19968 0.80604 0.84693 0.84125 1.90817 1.37119 1.25841 1.86502 1.45680 1.53803 1.32348 1.04869 1.21380 1.00793 0.95871 0.81299 1.22725 0.98862 0.83432 0.94284 0.90770 1.22066 1.01365 0.96369 0.83755 1.48084 1.61171 1.09794 1.16910 1.20357 0.76075 0.88262 0.82917 1.90704 1.51767 1.16143 1.80136 1.23305 1.04787 1.02345 0.96819 1.84843 1.75569 1.16861 1.14163 1.22287 1.45797 0.96897 1.02068 0.89359 1.24707 0.94039 0.97908 0.94574 1.69934 1.40955 1.33691 1.06915 0.86743 0.79435 0.84735 0.80984 1.19169 1.19874 1.15952 1.22466 1.01723 0.81324 0.99738 1.23024 0.99236 0.95166 0.85385 1.87950 1.73302 1.21615 1.46532 0.89752 0.90089 0.90886 0.75655 0.89133 0.89886 0.87628 0.90401 0.88402 0.88452 0.91874 0.90300 0.88033 0.87209 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 9.05 37.16 0.34 0.11 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 0.04 8.14 -51.93 -0.42 -0.38 16 4 C 0.22 1.83 13.88 -20.76 -0.29 1.54 16 5 N -0.41 -4.79 18.54 42.15 0.78 -4.00 16 6 C 0.52 3.57 7.14 -10.98 -0.08 3.49 16 7 O -0.53 -6.28 16.03 5.55 0.09 -6.19 16 8 N -0.71 -3.47 5.35 -60.29 -0.32 -3.79 16 9 C 0.13 0.83 5.37 -4.04 -0.02 0.81 16 10 C 0.07 0.45 2.87 -26.58 -0.08 0.38 16 11 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 12 C 0.09 0.84 5.93 -3.53 -0.02 0.82 16 13 N -0.62 -7.26 3.02 -172.28 -0.52 -7.78 16 14 C 0.54 8.80 7.73 -10.99 -0.08 8.72 16 15 O -0.51 -10.33 15.33 5.56 0.09 -10.25 16 16 C -0.12 -2.18 4.53 36.01 0.16 -2.02 16 17 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 18 C -0.52 -14.48 10.04 30.94 0.31 -14.17 16 19 H 0.09 2.54 8.03 -52.49 -0.42 2.11 16 20 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -25.74 13.97 55.49 0.78 -24.97 16 22 Si 0.86 21.16 27.74 -169.99 -4.72 16.44 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 26 C 0.07 0.59 6.54 -3.53 -0.02 0.57 16 27 C 0.05 0.30 6.98 37.31 0.26 0.57 16 28 O -0.38 -2.58 10.13 -35.23 -0.36 -2.94 16 29 H 0.08 -0.04 7.57 -51.93 -0.39 -0.43 16 30 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.41 0.93 7.78 -40.82 -0.32 0.61 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 1.15 7.08 -51.93 -0.37 0.78 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.63 8.02 -51.92 -0.42 1.22 16 38 H 0.10 1.58 7.66 -51.92 -0.40 1.18 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.84 6.06 -51.93 -0.31 0.53 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -38.36 380.17 -6.37 -44.73 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -6.01 Total: -4.71 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.09 Total: 3.13 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.71 Total: -40.54 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.18 Total: -19.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.72 Total: 16.44 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.36 -6.37 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.383 kcal (2) G-P(sol) polarization free energy of solvation -38.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds