Wall clock time and date at job start Tue Mar 31 2020 23:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47080 * 2 1 4 4 C 1.47208 * 109.46778 * 119.99665 * 2 1 3 5 5 N 2.60806 * 109.47106 * 119.99679 * 2 1 3 6 6 C 1.50693 * 109.47314 * 239.99616 * 2 1 3 7 7 O 1.21280 * 120.00319 * 240.00250 * 6 2 1 8 8 N 1.34774 * 119.99860 * 59.99683 * 6 2 1 9 9 C 1.46504 * 119.99994 * 180.02562 * 8 6 2 10 10 C 1.53002 * 109.47338 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.55174 * 59.86845 * 10 9 8 12 12 C 1.53291 * 109.51229 * 179.97438 * 10 9 8 13 13 N 1.47155 * 108.38246 * 172.22987 * 12 10 9 14 14 C 1.34778 * 120.98584 * 129.44551 * 13 12 10 15 15 O 1.21276 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99778 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46742 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99832 * 180.27629 * 18 17 16 21 21 N 1.31634 * 120.00296 * 359.72198 * 20 18 17 22 22 Si 1.86801 * 119.99859 * 179.72079 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99666 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00083 * 22 20 18 26 26 C 1.47160 * 118.03225 * 309.71018 * 13 12 10 27 27 C 1.52882 * 108.60408 * 50.23119 * 26 13 12 28 28 O 1.42957 * 109.30117 * 307.93483 * 27 26 13 29 29 H 1.09007 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47179 * 300.00108 * 1 2 3 31 31 H 1.09002 * 109.47492 * 60.00347 * 1 2 3 32 32 H 0.96997 * 120.00160 * 0.02562 * 8 6 2 33 33 H 1.08998 * 109.47015 * 60.00058 * 9 8 6 34 34 H 1.09007 * 109.46727 * 300.00123 * 9 8 6 35 35 H 1.08997 * 109.68563 * 52.50363 * 12 10 9 36 36 H 1.09003 * 109.71076 * 291.96398 * 12 10 9 37 37 H 1.09000 * 109.47396 * 59.99696 * 16 14 13 38 38 H 1.09001 * 109.47080 * 299.99119 * 16 14 13 39 39 H 0.96995 * 120.00136 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.67795 * 170.00903 * 26 13 12 41 41 H 1.08997 * 109.67946 * 290.56746 * 26 13 12 42 42 H 1.09003 * 109.57948 * 187.92076 * 27 26 13 43 43 H 1.09001 * 109.40619 * 67.83954 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7104 -1.2303 7 8 2.7296 -1.6965 -1.1190 8 7 1.7067 -0.2501 -2.4545 9 6 2.1946 -0.9411 -3.6506 10 6 1.6852 -0.2195 -4.8999 11 1 2.0466 0.8088 -4.9001 12 6 2.1958 -0.9415 -6.1521 13 7 1.5441 -0.3458 -7.3294 14 6 2.2677 0.0626 -8.3906 15 8 3.4744 -0.0580 -8.3842 16 6 1.5772 0.6692 -9.5849 17 16 2.8102 1.1133 -10.8333 18 6 1.7575 1.7794 -12.0796 19 1 0.6894 1.8124 -11.9231 20 6 2.3005 2.2558 -13.2647 21 7 3.6023 2.2151 -13.4556 22 14 1.1838 2.9547 -14.5891 23 1 -0.2277 2.8869 -14.1330 24 1 1.5522 4.3692 -14.8515 25 1 1.3391 2.1632 -15.8360 26 6 0.0795 -0.2038 -7.3113 27 6 -0.3284 0.4773 -6.0048 28 8 0.2556 -0.2236 -4.9041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5387 -2.5435 33 1 1.8309 -1.9686 -3.6504 34 1 3.2847 -0.9415 -3.6507 35 1 1.9475 -2.0011 -6.0919 36 1 3.2763 -0.8215 -6.2308 37 1 1.0350 1.5629 -9.2760 38 1 0.8775 -0.0530 -10.0056 39 1 3.9817 2.5484 -14.2837 40 1 -0.2407 0.4049 -8.1568 41 1 -0.3854 -1.1879 -7.3697 42 1 -1.4142 0.4645 -5.9096 43 1 0.0247 1.5085 -6.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:20 Heat of formation + Delta-G solvation = -84.419070 kcal Electronic energy + Delta-G solvation = -26383.330214 eV Core-core repulsion = 22362.368041 eV Total energy + Delta-G solvation = -4020.962173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74909 -40.18322 -38.40145 -37.03194 -35.53316 -34.71561 -33.96132 -32.49879 -32.15312 -29.65982 -28.56693 -26.28371 -25.63111 -25.26707 -23.68342 -21.84552 -21.46214 -19.41867 -18.68120 -17.87100 -17.70437 -17.16107 -16.89289 -16.52606 -15.81301 -15.64468 -15.58579 -15.19275 -14.97508 -14.86889 -14.52016 -14.29246 -13.98157 -13.70033 -13.60897 -13.29216 -13.22118 -13.04422 -12.87993 -12.77292 -12.52768 -12.37453 -12.13124 -12.02215 -11.95136 -11.66512 -11.12782 -11.09186 -11.07086 -10.82006 -10.48336 -10.38726 -9.87543 -9.60674 -9.53764 -9.14250 -8.66884 -8.31558 -6.58855 -6.28680 -4.00266 1.98611 2.01656 2.36761 2.61937 2.84574 2.90949 3.16444 3.16838 3.20609 3.25650 3.30184 3.45982 4.09459 4.12762 4.23120 4.32005 4.38348 4.46020 4.57426 4.65861 4.78989 4.84164 4.91902 5.02721 5.05094 5.06879 5.13990 5.23517 5.36845 5.38213 5.41136 5.49095 5.58660 5.67283 5.74581 5.83127 5.98468 6.32729 6.66124 6.86652 7.12567 7.32028 7.52752 7.62114 8.28018 8.36629 9.16787 10.78749 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.001808 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.563849 B =15486.969983 C =15917.898811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 H 0.142 0.858 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.523 3.477 7 O -0.527 6.527 8 N -0.714 5.714 9 C 0.131 3.869 10 C 0.066 3.934 11 H 0.074 0.926 12 C 0.088 3.912 13 N -0.624 5.624 14 C 0.537 3.463 15 O -0.511 6.511 16 C -0.151 4.151 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.072 3.928 27 C 0.049 3.951 28 O -0.375 6.375 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 -1.011 22.515 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.159 0.841 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.306 3.694 7 O -0.403 6.403 8 N -0.367 5.367 9 C 0.007 3.993 10 C 0.007 3.993 11 H 0.092 0.908 12 C -0.036 4.036 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.385 6.385 16 C -0.301 4.301 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.051 4.051 27 C -0.028 4.028 28 O -0.294 6.294 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.243 0.757 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.197 -2.777 23.988 25.841 hybrid contribution -2.446 1.320 -1.635 3.224 sum -11.643 -1.458 22.353 25.246 Atomic orbital electron populations 1.21819 0.89361 1.04501 1.04588 1.18828 0.98935 1.00225 0.85495 0.84051 1.28070 0.93869 0.93995 0.94003 1.81211 1.07578 1.07721 1.12062 1.19963 0.80608 0.84720 0.84125 1.90816 1.37201 1.25761 1.86498 1.45686 1.53725 1.32398 1.04880 1.21386 0.99707 0.96969 0.81269 1.22729 0.82258 0.99997 0.94324 0.90782 1.22051 1.00365 0.97391 0.83776 1.48122 1.06967 1.63803 1.17260 1.20394 0.87333 0.76875 0.82863 1.90708 1.13930 1.53911 1.79936 1.23553 1.05313 1.02921 0.98354 1.85452 1.07746 1.79276 1.10832 1.22887 0.95001 1.47261 1.03306 0.90845 1.24998 0.95485 0.95307 0.97761 1.70021 1.10367 1.43775 1.25998 0.86109 0.80060 0.78663 0.80616 1.19609 1.20532 1.20528 1.22344 0.80748 1.02435 0.99615 1.22941 0.99111 0.95264 0.85496 1.87941 1.18577 1.76235 1.46674 0.90919 0.90182 0.89627 0.75681 0.89892 0.89103 0.90507 0.87620 0.89217 0.89121 0.92158 0.88144 0.90494 0.87301 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.25 9.04 37.16 0.34 0.08 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 0.06 8.14 -51.93 -0.42 -0.36 16 4 C 0.22 1.87 13.88 -20.76 -0.29 1.58 16 5 N -0.41 -4.86 18.54 42.15 0.78 -4.08 16 6 C 0.52 3.70 7.14 -10.99 -0.08 3.62 16 7 O -0.53 -6.42 16.03 5.56 0.09 -6.33 16 8 N -0.71 -3.68 5.34 -60.29 -0.32 -4.00 16 9 C 0.13 0.89 5.37 -4.04 -0.02 0.86 16 10 C 0.07 0.49 2.86 -26.58 -0.08 0.41 16 11 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 12 C 0.09 0.90 5.93 -3.53 -0.02 0.88 16 13 N -0.62 -7.73 3.03 -172.53 -0.52 -8.25 16 14 C 0.54 9.36 7.73 -10.99 -0.08 9.28 16 15 O -0.51 -10.93 15.33 5.56 0.09 -10.84 16 16 C -0.15 -2.83 4.53 36.01 0.16 -2.67 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 22 Si 0.92 20.70 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.07 0.64 6.51 -3.74 -0.02 0.61 16 27 C 0.05 0.32 6.97 37.10 0.26 0.58 16 28 O -0.38 -2.69 10.14 -35.23 -0.36 -3.05 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.08 -0.01 7.57 -51.93 -0.39 -0.40 16 32 H 0.41 1.04 7.77 -40.82 -0.32 0.72 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.23 7.08 -51.93 -0.37 0.87 16 37 H 0.09 1.52 7.65 -51.92 -0.40 1.12 16 38 H 0.09 1.58 8.03 -51.92 -0.42 1.16 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.10 0.88 6.05 -51.93 -0.31 0.56 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -38.75 382.82 -6.89 -45.64 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.98 Total: -4.48 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 0.07 Total: 2.45 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.67 Total: -41.06 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.18 Total: -20.23 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.75 -6.89 -45.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.776 kcal (2) G-P(sol) polarization free energy of solvation -38.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds