Wall clock time and date at job start Tue Mar 31 2020 23:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47080 * 2 1 4 4 C 1.47208 * 109.46778 * 119.99665 * 2 1 3 5 5 N 2.60806 * 109.47106 * 119.99679 * 2 1 3 6 6 C 1.50693 * 109.47314 * 239.99616 * 2 1 3 7 7 O 1.21280 * 120.00319 * 240.00250 * 6 2 1 8 8 N 1.34774 * 119.99860 * 59.99683 * 6 2 1 9 9 C 1.46504 * 119.99994 * 180.02562 * 8 6 2 10 10 C 1.53002 * 109.47338 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.55174 * 59.86845 * 10 9 8 12 12 C 1.53291 * 109.51229 * 179.97438 * 10 9 8 13 13 N 1.47155 * 108.38246 * 172.22987 * 12 10 9 14 14 C 1.34778 * 120.98584 * 129.44551 * 13 12 10 15 15 O 1.21276 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99778 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46742 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99832 * 180.27629 * 18 17 16 21 21 N 1.31634 * 120.00296 * 359.72198 * 20 18 17 22 22 Si 1.86801 * 119.99859 * 179.72079 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99666 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00083 * 22 20 18 26 26 C 1.47160 * 118.03225 * 309.71018 * 13 12 10 27 27 C 1.52882 * 108.60408 * 50.23119 * 26 13 12 28 28 O 1.42957 * 109.30117 * 307.93483 * 27 26 13 29 29 H 1.09007 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47179 * 300.00108 * 1 2 3 31 31 H 1.09002 * 109.47492 * 60.00347 * 1 2 3 32 32 H 0.96997 * 120.00160 * 0.02562 * 8 6 2 33 33 H 1.08998 * 109.47015 * 60.00058 * 9 8 6 34 34 H 1.09007 * 109.46727 * 300.00123 * 9 8 6 35 35 H 1.08997 * 109.68563 * 52.50363 * 12 10 9 36 36 H 1.09003 * 109.71076 * 291.96398 * 12 10 9 37 37 H 1.09000 * 109.47396 * 59.99696 * 16 14 13 38 38 H 1.09001 * 109.47080 * 299.99119 * 16 14 13 39 39 H 0.96995 * 120.00136 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.67795 * 170.00903 * 26 13 12 41 41 H 1.08997 * 109.67946 * 290.56746 * 26 13 12 42 42 H 1.09003 * 109.57948 * 187.92076 * 27 26 13 43 43 H 1.09001 * 109.40619 * 67.83954 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7104 -1.2303 7 8 2.7296 -1.6965 -1.1190 8 7 1.7067 -0.2501 -2.4545 9 6 2.1946 -0.9411 -3.6506 10 6 1.6852 -0.2195 -4.8999 11 1 2.0466 0.8088 -4.9001 12 6 2.1958 -0.9415 -6.1521 13 7 1.5441 -0.3458 -7.3294 14 6 2.2677 0.0626 -8.3906 15 8 3.4744 -0.0580 -8.3842 16 6 1.5772 0.6692 -9.5849 17 16 2.8102 1.1133 -10.8333 18 6 1.7575 1.7794 -12.0796 19 1 0.6894 1.8124 -11.9231 20 6 2.3005 2.2558 -13.2647 21 7 3.6023 2.2151 -13.4556 22 14 1.1838 2.9547 -14.5891 23 1 -0.2277 2.8869 -14.1330 24 1 1.5522 4.3692 -14.8515 25 1 1.3391 2.1632 -15.8360 26 6 0.0795 -0.2038 -7.3113 27 6 -0.3284 0.4773 -6.0048 28 8 0.2556 -0.2236 -4.9041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5387 -2.5435 33 1 1.8309 -1.9686 -3.6504 34 1 3.2847 -0.9415 -3.6507 35 1 1.9475 -2.0011 -6.0919 36 1 3.2763 -0.8215 -6.2308 37 1 1.0350 1.5629 -9.2760 38 1 0.8775 -0.0530 -10.0056 39 1 3.9817 2.5484 -14.2837 40 1 -0.2407 0.4049 -8.1568 41 1 -0.3854 -1.1879 -7.3697 42 1 -1.4142 0.4645 -5.9096 43 1 0.0247 1.5085 -6.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064881730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:19 Heat of formation + Delta-G solvation = -114.607088 kcal Electronic energy + Delta-G solvation = -26384.639265 eV Core-core repulsion = 22362.368041 eV Total energy + Delta-G solvation = -4022.271224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51585 -40.97967 -39.42800 -37.72440 -36.28059 -35.62541 -34.57510 -34.43236 -32.84303 -30.96982 -29.30361 -27.72563 -26.84506 -25.86910 -24.37139 -22.62414 -22.05990 -20.59280 -19.62377 -19.20404 -18.27832 -18.19245 -17.73447 -17.26396 -16.87417 -16.76504 -16.61303 -16.27910 -15.95195 -15.77912 -15.62033 -15.11544 -14.93352 -14.73391 -14.52009 -14.33969 -14.11723 -13.86185 -13.71153 -13.50969 -13.37560 -13.21837 -13.15609 -12.91375 -12.79814 -12.73048 -12.58055 -12.37228 -12.26584 -11.77391 -11.69319 -11.20267 -11.15021 -11.03092 -10.87142 -10.25085 -10.17149 -9.64321 -8.66893 -8.34012 -6.12357 1.22649 1.39069 1.42805 1.47146 1.48306 1.52945 1.57654 1.73326 1.95979 2.27564 2.31958 2.60678 2.81953 3.00764 3.23407 3.57596 3.66270 3.79334 3.82714 3.97023 3.98571 4.04130 4.18262 4.21439 4.28789 4.37855 4.43434 4.48553 4.63877 4.68841 4.81561 4.88079 4.90356 4.92046 4.99243 5.29012 5.33640 5.38736 5.43285 6.07376 6.17606 6.21218 6.38716 6.55491 7.06943 7.07895 7.15232 8.75319 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.001808 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.563849 B =15486.969983 C =15917.898811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 H 0.189 0.811 4 C 0.241 3.759 5 N -0.480 5.480 6 C 0.523 3.477 7 O -0.586 6.586 8 N -0.697 5.697 9 C 0.134 3.866 10 C 0.083 3.917 11 H 0.081 0.919 12 C 0.082 3.918 13 N -0.611 5.611 14 C 0.535 3.465 15 O -0.563 6.563 16 C -0.123 4.123 17 S -0.154 6.154 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.254 1.254 24 H -0.275 1.275 25 H -0.277 1.277 26 C 0.061 3.939 27 C 0.053 3.947 28 O -0.372 6.372 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.425 0.575 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.924 0.581 22.994 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.206 0.794 4 C -0.077 4.077 5 N -0.156 5.156 6 C 0.308 3.692 7 O -0.465 6.465 8 N -0.349 5.349 9 C 0.009 3.991 10 C 0.024 3.976 11 H 0.099 0.901 12 C -0.042 4.042 13 N -0.347 5.347 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.274 4.274 17 S 0.073 5.927 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.177 1.177 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.061 4.061 27 C -0.024 4.024 28 O -0.290 6.290 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.263 0.737 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.068 -1.163 24.502 27.793 hybrid contribution -1.347 0.763 -1.713 2.309 sum -14.415 -0.400 22.789 26.968 Atomic orbital electron populations 1.21899 0.87058 1.04167 1.06784 1.19170 1.00431 1.01211 0.81755 0.79444 1.28962 0.92114 0.92601 0.94032 1.81218 1.09917 1.09893 1.14556 1.20454 0.79572 0.83952 0.85213 1.90808 1.39967 1.28469 1.87299 1.45508 1.53142 1.32448 1.03839 1.21229 0.99434 0.96703 0.81700 1.22488 0.82603 0.99748 0.92747 0.90144 1.22232 0.99443 0.98318 0.84179 1.48085 1.08549 1.61833 1.16184 1.20166 0.86760 0.77070 0.83654 1.90693 1.16016 1.56383 1.81024 1.23363 1.03014 1.04409 0.96655 1.85659 1.12795 1.79990 1.14273 1.23231 0.95416 1.46921 1.03541 0.89633 1.26124 0.97033 0.95553 1.00447 1.70191 1.12671 1.45147 1.26846 0.84910 0.78463 0.77675 0.76936 1.17724 1.20022 1.20231 1.22733 0.78026 1.03813 1.01525 1.23085 1.00847 0.94883 0.83601 1.87963 1.17882 1.76382 1.46822 0.92554 0.88626 0.86787 0.73669 0.90711 0.89734 0.89563 0.89601 0.86857 0.87395 0.92049 0.87772 0.89104 0.84056 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 9.04 71.98 0.65 0.66 16 2 C 0.00 -0.01 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -0.71 8.14 -2.39 -0.02 -0.73 16 4 C 0.24 3.92 13.88 89.44 1.24 5.16 16 5 N -0.48 -11.63 18.54 20.01 0.37 -11.26 16 6 C 0.52 6.47 7.14 87.66 0.63 7.10 16 7 O -0.59 -14.27 16.03 -3.03 -0.05 -14.32 16 8 N -0.70 -5.28 5.34 -463.05 -2.47 -7.75 16 9 C 0.13 1.61 5.37 86.38 0.46 2.07 16 10 C 0.08 1.03 2.86 30.69 0.09 1.11 16 11 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 12 C 0.08 1.58 5.93 86.35 0.51 2.09 16 13 N -0.61 -14.13 3.03 -818.14 -2.48 -16.60 16 14 C 0.54 18.51 7.73 87.66 0.68 19.18 16 15 O -0.56 -24.90 15.33 -3.02 -0.05 -24.95 16 16 C -0.12 -4.53 4.53 71.24 0.32 -4.20 16 17 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 18 C -0.54 -29.75 9.50 67.95 0.65 -29.11 16 19 H 0.09 4.29 7.80 -2.91 -0.02 4.27 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -54.78 13.22 21.65 0.29 -54.50 16 22 Si 1.00 42.00 29.55 68.60 2.03 44.02 16 23 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 26 C 0.06 0.87 6.51 86.21 0.56 1.43 16 27 C 0.05 0.45 6.97 71.94 0.50 0.95 16 28 O -0.37 -3.84 10.14 -148.98 -1.51 -5.35 16 29 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.11 -0.61 7.57 -2.39 -0.02 -0.63 16 32 H 0.42 0.36 7.77 -92.71 -0.72 -0.36 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.06 7.08 -2.39 -0.02 2.04 16 37 H 0.11 3.60 7.65 -2.40 -0.02 3.58 16 38 H 0.11 3.57 8.03 -2.39 -0.02 3.55 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.10 1.43 6.05 -2.39 -0.01 1.42 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -90.86 382.82 2.01 -88.86 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 0.33 Total: 3.67 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.72 Total: 7.59 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -4.29 Total: -90.11 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.61 Total: -44.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -90.86 2.01 -88.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.752 kcal (2) G-P(sol) polarization free energy of solvation -90.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds