Wall clock time and date at job start Tue Mar 31 2020 23:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.47206 * 109.47080 * 119.99946 * 2 1 3 5 5 N 2.60798 * 109.47138 * 119.99820 * 2 1 3 6 6 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 7 7 O 1.21282 * 120.00041 * 240.00247 * 6 2 1 8 8 N 1.34779 * 120.00033 * 60.00305 * 6 2 1 9 9 C 1.46500 * 120.00165 * 179.97438 * 8 6 2 10 10 C 1.52996 * 109.46993 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.51269 * 304.99469 * 10 9 8 12 12 C 1.53302 * 109.50845 * 184.89819 * 10 9 8 13 13 N 1.47158 * 108.37983 * 187.77403 * 12 10 9 14 14 C 1.34774 * 120.97878 * 230.51189 * 13 12 10 15 15 O 1.21281 * 120.00407 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00055 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47324 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99851 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00133 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99811 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46723 * 0.02562 * 22 20 18 24 24 H 1.48490 * 109.47049 * 119.99926 * 22 20 18 25 25 H 1.48498 * 109.47249 * 240.00428 * 22 20 18 26 26 C 1.47148 * 118.03562 * 50.53753 * 13 12 10 27 27 C 1.53294 * 108.38557 * 309.45849 * 26 13 12 28 28 O 1.42959 * 109.26126 * 52.28345 * 27 26 13 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 31 31 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 32 32 H 0.96996 * 119.99850 * 359.97438 * 8 6 2 33 33 H 1.08996 * 109.47197 * 300.00087 * 9 8 6 34 34 H 1.09004 * 109.46923 * 59.99390 * 9 8 6 35 35 H 1.08996 * 109.68309 * 307.49662 * 12 10 9 36 36 H 1.09002 * 109.68083 * 68.01569 * 12 10 9 37 37 H 1.09003 * 109.46978 * 300.00250 * 16 14 13 38 38 H 1.09005 * 109.46816 * 60.00224 * 16 14 13 39 39 H 0.96997 * 120.00032 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.67988 * 69.18868 * 26 13 12 41 41 H 1.08997 * 109.68065 * 189.70289 * 26 13 12 42 42 H 1.09000 * 109.51206 * 172.22587 * 27 26 13 43 43 H 1.08991 * 109.51365 * 292.32999 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.7296 -1.6966 -1.1191 8 7 1.7068 -0.2500 -2.4546 9 6 2.1956 -0.9403 -3.6507 10 6 1.6851 -0.2195 -4.8999 11 1 0.5987 -0.1418 -4.8570 12 6 2.0929 -1.0090 -6.1492 13 7 1.7573 -0.2058 -7.3357 14 6 1.0526 -0.7355 -8.3552 15 8 0.6849 -1.8900 -8.3030 16 6 0.7216 0.1069 -9.5602 17 16 -0.2240 -0.8810 -10.7457 18 6 -0.4682 0.3160 -12.0155 19 1 -0.0694 1.3131 -11.9016 20 6 -1.1733 -0.0227 -13.1622 21 7 -1.6598 -1.2378 -13.3008 22 14 -1.4316 1.2460 -14.5087 23 1 -0.7900 2.5255 -14.1128 24 1 -0.8229 0.7579 -15.7721 25 1 -2.8865 1.4633 -14.7117 26 6 2.2142 1.1923 -7.3764 27 6 1.8004 1.8745 -6.0674 28 8 2.2555 1.0899 -4.9624 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 3.2856 -0.9399 -3.6505 34 1 1.8327 -1.9682 -3.6508 35 1 3.1655 -1.2017 -6.1277 36 1 1.5506 -1.9540 -6.1794 37 1 0.1294 0.9679 -9.2500 38 1 1.6444 0.4501 -10.0281 39 1 -2.1528 -1.4744 -14.1020 40 1 3.2990 1.2211 -7.4785 41 1 1.7523 1.7050 -8.2201 42 1 2.2472 2.8674 -6.0173 43 1 0.7146 1.9615 -6.0296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:23 Heat of formation + Delta-G solvation = -84.473182 kcal Electronic energy + Delta-G solvation = -26366.090842 eV Core-core repulsion = 22345.126322 eV Total energy + Delta-G solvation = -4020.964520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74474 -40.18031 -38.39602 -37.03470 -35.53625 -34.72053 -33.96355 -32.50038 -32.14217 -29.65269 -28.54616 -26.28260 -25.63425 -25.27475 -23.68583 -21.85730 -21.47050 -19.41467 -18.67945 -17.85841 -17.72881 -17.16095 -16.90635 -16.39107 -16.01082 -15.64582 -15.56340 -15.04882 -15.00782 -14.86940 -14.54420 -14.29663 -13.97853 -13.72652 -13.58067 -13.29008 -13.21946 -13.09004 -12.83461 -12.79535 -12.53931 -12.36909 -12.12302 -12.03635 -11.95339 -11.67081 -11.12831 -11.09199 -11.06330 -10.81994 -10.49060 -10.38210 -9.87580 -9.61605 -9.53607 -9.14311 -8.66565 -8.31588 -6.58903 -6.28739 -4.00267 1.99746 2.00164 2.36617 2.62444 2.84150 2.90773 3.16461 3.17002 3.20957 3.25648 3.29727 3.46009 4.08343 4.12739 4.22575 4.31772 4.39524 4.45068 4.57126 4.65731 4.78988 4.84687 4.89957 5.02537 5.04199 5.06854 5.13996 5.23590 5.36621 5.38192 5.40373 5.49249 5.58669 5.67187 5.74574 5.82987 5.98488 6.32686 6.66974 6.85757 7.12367 7.32098 7.52771 7.61538 8.28001 8.36611 9.16749 10.78696 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.001809 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.425740 B =15474.764751 C =15643.415525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.143 0.857 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.523 3.477 7 O -0.527 6.527 8 N -0.715 5.715 9 C 0.130 3.870 10 C 0.066 3.934 11 H 0.074 0.926 12 C 0.088 3.912 13 N -0.624 5.624 14 C 0.537 3.463 15 O -0.512 6.512 16 C -0.151 4.151 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.072 3.928 27 C 0.049 3.951 28 O -0.375 6.375 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.407 0.593 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 10.483 22.009 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 H 0.160 0.840 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.306 3.694 7 O -0.402 6.402 8 N -0.368 5.368 9 C 0.006 3.994 10 C 0.007 3.993 11 H 0.092 0.908 12 C -0.036 4.036 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.385 6.385 16 C -0.301 4.301 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.051 4.051 27 C -0.028 4.028 28 O -0.294 6.294 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.980 7.155 23.554 25.333 hybrid contribution -0.236 2.785 -1.696 3.269 sum 5.744 9.940 21.859 24.690 Atomic orbital electron populations 1.21825 0.89411 1.04528 1.04597 1.18827 0.98883 1.00258 0.85496 0.84005 1.28063 0.93878 0.93996 0.94002 1.81209 1.07590 1.07700 1.12056 1.19963 0.80607 0.84703 0.84114 1.90817 1.37133 1.25792 1.86496 1.45711 1.53782 1.32345 1.04934 1.21375 1.00869 0.95870 0.81252 1.22721 0.98100 0.84187 0.94290 0.90794 1.22050 1.01881 0.96033 0.83605 1.48123 1.56737 1.12409 1.18898 1.20396 0.76305 0.87777 0.82992 1.90709 1.51300 1.17486 1.79004 1.23554 1.05185 1.03326 0.98082 1.85448 1.67301 1.16802 1.13748 1.22887 1.41372 0.99357 1.04847 0.90846 1.24998 0.94715 0.96020 0.97814 1.70017 1.34035 1.18209 1.27894 0.86111 0.78120 0.80534 0.80691 1.19605 1.20529 1.20533 1.22429 1.00948 0.82211 0.99546 1.23012 0.99741 0.94735 0.85327 1.87955 1.68688 1.25180 1.47599 0.90858 0.90092 0.89759 0.75747 0.89820 0.89071 0.90507 0.87613 0.89214 0.89127 0.92157 0.90473 0.88135 0.87343 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 9.04 37.16 0.34 0.08 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 0.06 8.14 -51.93 -0.42 -0.36 16 4 C 0.22 1.87 13.88 -20.76 -0.29 1.58 16 5 N -0.41 -4.86 18.54 42.15 0.78 -4.08 16 6 C 0.52 3.70 7.14 -10.99 -0.08 3.62 16 7 O -0.53 -6.41 16.03 5.56 0.09 -6.33 16 8 N -0.72 -3.68 5.40 -60.30 -0.33 -4.01 16 9 C 0.13 0.88 5.34 -4.04 -0.02 0.86 16 10 C 0.07 0.49 2.81 -26.58 -0.07 0.41 16 11 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 12 C 0.09 0.90 5.93 -3.53 -0.02 0.88 16 13 N -0.62 -7.74 3.02 -172.27 -0.52 -8.26 16 14 C 0.54 9.35 7.73 -10.99 -0.08 9.27 16 15 O -0.51 -10.91 15.33 5.56 0.09 -10.83 16 16 C -0.15 -2.83 4.53 36.01 0.16 -2.67 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.44 13.22 55.49 0.73 -24.71 16 22 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.07 0.64 6.54 -3.54 -0.02 0.62 16 27 C 0.05 0.33 6.98 37.31 0.26 0.59 16 28 O -0.38 -2.79 10.33 -35.23 -0.36 -3.15 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.08 -0.02 7.56 -51.93 -0.39 -0.41 16 32 H 0.41 1.02 7.89 -40.82 -0.32 0.70 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.23 7.08 -51.93 -0.37 0.86 16 37 H 0.09 1.52 7.66 -51.92 -0.40 1.12 16 38 H 0.09 1.58 8.02 -51.91 -0.42 1.16 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.88 6.05 -51.93 -0.31 0.57 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -38.78 383.14 -6.89 -45.68 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.98 Total: -4.46 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 0.07 Total: 2.47 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.67 Total: -41.05 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.19 Total: -20.31 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.78 -6.89 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.796 kcal (2) G-P(sol) polarization free energy of solvation -38.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds