Wall clock time and date at job start Tue Mar 31 2020 23:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.47206 * 109.47080 * 119.99946 * 2 1 3 5 5 N 2.60798 * 109.47138 * 119.99820 * 2 1 3 6 6 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 7 7 O 1.21282 * 120.00041 * 240.00247 * 6 2 1 8 8 N 1.34779 * 120.00033 * 60.00305 * 6 2 1 9 9 C 1.46500 * 120.00165 * 179.97438 * 8 6 2 10 10 C 1.52996 * 109.46993 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.51269 * 304.99469 * 10 9 8 12 12 C 1.53302 * 109.50845 * 184.89819 * 10 9 8 13 13 N 1.47158 * 108.37983 * 187.77403 * 12 10 9 14 14 C 1.34774 * 120.97878 * 230.51189 * 13 12 10 15 15 O 1.21281 * 120.00407 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00055 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47324 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99851 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00133 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99811 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46723 * 0.02562 * 22 20 18 24 24 H 1.48490 * 109.47049 * 119.99926 * 22 20 18 25 25 H 1.48498 * 109.47249 * 240.00428 * 22 20 18 26 26 C 1.47148 * 118.03562 * 50.53753 * 13 12 10 27 27 C 1.53294 * 108.38557 * 309.45849 * 26 13 12 28 28 O 1.42959 * 109.26126 * 52.28345 * 27 26 13 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 31 31 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 32 32 H 0.96996 * 119.99850 * 359.97438 * 8 6 2 33 33 H 1.08996 * 109.47197 * 300.00087 * 9 8 6 34 34 H 1.09004 * 109.46923 * 59.99390 * 9 8 6 35 35 H 1.08996 * 109.68309 * 307.49662 * 12 10 9 36 36 H 1.09002 * 109.68083 * 68.01569 * 12 10 9 37 37 H 1.09003 * 109.46978 * 300.00250 * 16 14 13 38 38 H 1.09005 * 109.46816 * 60.00224 * 16 14 13 39 39 H 0.96997 * 120.00032 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.67988 * 69.18868 * 26 13 12 41 41 H 1.08997 * 109.68065 * 189.70289 * 26 13 12 42 42 H 1.09000 * 109.51206 * 172.22587 * 27 26 13 43 43 H 1.08991 * 109.51365 * 292.32999 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.7296 -1.6966 -1.1191 8 7 1.7068 -0.2500 -2.4546 9 6 2.1956 -0.9403 -3.6507 10 6 1.6851 -0.2195 -4.8999 11 1 0.5987 -0.1418 -4.8570 12 6 2.0929 -1.0090 -6.1492 13 7 1.7573 -0.2058 -7.3357 14 6 1.0526 -0.7355 -8.3552 15 8 0.6849 -1.8900 -8.3030 16 6 0.7216 0.1069 -9.5602 17 16 -0.2240 -0.8810 -10.7457 18 6 -0.4682 0.3160 -12.0155 19 1 -0.0694 1.3131 -11.9016 20 6 -1.1733 -0.0227 -13.1622 21 7 -1.6598 -1.2378 -13.3008 22 14 -1.4316 1.2460 -14.5087 23 1 -0.7900 2.5255 -14.1128 24 1 -0.8229 0.7579 -15.7721 25 1 -2.8865 1.4633 -14.7117 26 6 2.2142 1.1923 -7.3764 27 6 1.8004 1.8745 -6.0674 28 8 2.2555 1.0899 -4.9624 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 3.2856 -0.9399 -3.6505 34 1 1.8327 -1.9682 -3.6508 35 1 3.1655 -1.2017 -6.1277 36 1 1.5506 -1.9540 -6.1794 37 1 0.1294 0.9679 -9.2500 38 1 1.6444 0.4501 -10.0281 39 1 -2.1528 -1.4744 -14.1020 40 1 3.2990 1.2211 -7.4785 41 1 1.7523 1.7050 -8.2201 42 1 2.2472 2.8674 -6.0173 43 1 0.7146 1.9615 -6.0296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064881731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:22 Heat of formation + Delta-G solvation = -114.717967 kcal Electronic energy + Delta-G solvation = -26367.402354 eV Core-core repulsion = 22345.126322 eV Total energy + Delta-G solvation = -4022.276032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51079 -40.98204 -39.42395 -37.72784 -36.28023 -35.63892 -34.57570 -34.43674 -32.83615 -30.96400 -29.28490 -27.72477 -26.84687 -25.88414 -24.37839 -22.63277 -22.07404 -20.59052 -19.62142 -19.20284 -18.30522 -18.15840 -17.79716 -17.14067 -16.87280 -16.77319 -16.64269 -16.39280 -15.95525 -15.67324 -15.62261 -15.11872 -14.96049 -14.73148 -14.52303 -14.33233 -14.12096 -13.84506 -13.74224 -13.50613 -13.39088 -13.22498 -13.15543 -12.91373 -12.81593 -12.72107 -12.58167 -12.39030 -12.27228 -11.77281 -11.69236 -11.20578 -11.14995 -11.03636 -10.87057 -10.25003 -10.18003 -9.64141 -8.66777 -8.33969 -6.12224 1.22810 1.39155 1.42832 1.47128 1.47779 1.52951 1.57673 1.73139 1.96178 2.27593 2.31451 2.60792 2.81549 3.00830 3.23473 3.57348 3.65853 3.78256 3.82949 3.96401 3.97598 4.03603 4.18243 4.21381 4.28779 4.37634 4.43240 4.48250 4.63035 4.68307 4.81400 4.85632 4.88789 4.91465 4.98976 5.28519 5.32133 5.38483 5.43405 6.07699 6.17586 6.21282 6.38127 6.55043 7.06968 7.07954 7.14594 8.75363 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.001809 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.425740 B =15474.764751 C =15643.415525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.001 4.001 3 H 0.190 0.810 4 C 0.241 3.759 5 N -0.480 5.480 6 C 0.523 3.477 7 O -0.585 6.585 8 N -0.698 5.698 9 C 0.134 3.866 10 C 0.083 3.917 11 H 0.082 0.918 12 C 0.082 3.918 13 N -0.611 5.611 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.124 4.124 17 S -0.154 6.154 18 C -0.543 4.543 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.061 3.939 27 C 0.053 3.947 28 O -0.373 6.373 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.424 0.576 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.140 0.860 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 14.623 22.366 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.207 0.793 4 C -0.077 4.077 5 N -0.156 5.156 6 C 0.308 3.692 7 O -0.465 6.465 8 N -0.350 5.350 9 C 0.009 3.991 10 C 0.024 3.976 11 H 0.100 0.900 12 C -0.042 4.042 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.441 6.441 16 C -0.275 4.275 17 S 0.073 5.927 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.177 1.177 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.061 4.061 27 C -0.024 4.024 28 O -0.292 6.292 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.158 0.842 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.101 11.380 23.942 27.202 hybrid contribution -0.185 1.543 -1.740 2.333 sum 5.916 12.923 22.201 26.361 Atomic orbital electron populations 1.21913 0.87241 1.04146 1.06827 1.19161 1.00266 1.01281 0.81759 0.79312 1.28955 0.92123 0.92604 0.94032 1.81216 1.09938 1.09859 1.14548 1.20453 0.79579 0.83932 0.85202 1.90808 1.39926 1.28465 1.87296 1.45532 1.53182 1.32431 1.03888 1.21216 1.00408 0.95777 0.81684 1.22491 0.98405 0.83976 0.92729 0.90015 1.22231 1.02218 0.95718 0.83993 1.48086 1.54632 1.14040 1.17901 1.20164 0.76884 0.86929 0.83661 1.90694 1.53860 1.19442 1.80097 1.23365 1.04783 1.02563 0.96753 1.85653 1.69584 1.20574 1.16861 1.23231 1.41227 0.99617 1.05051 0.89646 1.26122 0.94220 0.98211 1.00592 1.70186 1.35159 1.20668 1.28826 0.84912 0.78189 0.78022 0.76877 1.17736 1.20233 1.20015 1.22813 1.01841 0.79975 1.01439 1.23153 1.00417 0.95426 0.83429 1.87976 1.68751 1.24700 1.47778 0.92605 0.88558 0.86843 0.73709 0.90619 0.89743 0.89585 0.89536 0.86854 0.87416 0.92046 0.89116 0.87743 0.84219 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 9.04 71.98 0.65 0.61 16 2 C 0.00 0.00 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -0.75 8.14 -2.39 -0.02 -0.77 16 4 C 0.24 3.92 13.88 89.44 1.24 5.16 16 5 N -0.48 -11.63 18.54 20.01 0.37 -11.25 16 6 C 0.52 6.48 7.14 87.66 0.63 7.11 16 7 O -0.59 -14.25 16.03 -3.04 -0.05 -14.30 16 8 N -0.70 -5.29 5.40 -463.06 -2.50 -7.79 16 9 C 0.13 1.61 5.34 86.38 0.46 2.07 16 10 C 0.08 1.03 2.81 30.69 0.09 1.11 16 11 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 12 C 0.08 1.58 5.93 86.36 0.51 2.10 16 13 N -0.61 -14.14 3.02 -817.35 -2.47 -16.60 16 14 C 0.54 18.48 7.73 87.66 0.68 19.16 16 15 O -0.56 -24.82 15.33 -3.03 -0.05 -24.87 16 16 C -0.12 -4.53 4.53 71.24 0.32 -4.21 16 17 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 18 C -0.54 -29.75 9.50 67.96 0.65 -29.10 16 19 H 0.09 4.29 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 22 Si 1.00 41.98 29.55 68.60 2.03 44.00 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.06 0.88 6.54 86.35 0.56 1.45 16 27 C 0.05 0.47 6.98 72.08 0.50 0.97 16 28 O -0.37 -4.06 10.33 -148.98 -1.54 -5.59 16 29 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 -0.19 8.14 -2.39 -0.02 -0.20 16 31 H 0.11 -0.59 7.56 -2.39 -0.02 -0.60 16 32 H 0.42 0.32 7.89 -92.71 -0.73 -0.41 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.06 7.08 -2.39 -0.02 2.04 16 37 H 0.11 3.60 7.66 -2.39 -0.02 3.58 16 38 H 0.11 3.57 8.02 -2.39 -0.02 3.55 16 39 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.45 6.05 -2.39 -0.01 1.44 16 42 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -90.81 383.14 1.95 -88.85 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.31 Total: 3.80 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.72 Total: 7.57 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.31 Total: -90.09 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.63 Total: -44.77 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -90.81 1.95 -88.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.863 kcal (2) G-P(sol) polarization free energy of solvation -90.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds