Wall clock time and date at job start Tue Mar 31 2020 23:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47295 * 2 1 4 4 C 1.47202 * 109.46851 * 240.00383 * 2 1 3 5 5 N 2.60804 * 109.46936 * 240.00424 * 2 1 3 6 6 C 1.50699 * 109.47005 * 120.00771 * 2 1 3 7 7 O 1.21278 * 120.00321 * 95.14761 * 6 2 1 8 8 N 1.34780 * 119.99877 * 275.14316 * 6 2 1 9 9 C 1.47150 * 120.97828 * 355.18182 * 8 6 2 10 10 C 1.53301 * 108.38443 * 129.47754 * 9 8 6 11 11 O 1.42962 * 109.22132 * 52.29682 * 10 9 8 12 12 C 1.42965 * 114.16938 * 297.41935 * 11 10 9 13 13 H 1.08994 * 109.51260 * 302.61185 * 12 11 10 14 14 C 1.52995 * 109.51246 * 182.50369 * 12 11 10 15 15 N 1.46501 * 109.47025 * 65.10540 * 14 12 11 16 16 C 1.34777 * 120.00276 * 179.97438 * 15 14 12 17 17 O 1.21281 * 119.99498 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00090 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.46972 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99898 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99704 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99552 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47136 * 59.99744 * 24 22 20 26 26 H 1.48505 * 109.46656 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47005 * 299.99655 * 24 22 20 28 28 C 1.47164 * 120.94404 * 175.15566 * 8 6 2 29 29 H 1.08999 * 109.46976 * 304.98139 * 1 2 3 30 30 H 1.09001 * 109.47022 * 64.98037 * 1 2 3 31 31 H 1.09002 * 109.46658 * 184.98261 * 1 2 3 32 32 H 1.08999 * 109.68776 * 9.74995 * 9 8 6 33 33 H 1.09006 * 109.68135 * 249.19579 * 9 8 6 34 34 H 1.09001 * 109.50709 * 292.37505 * 10 9 8 35 35 H 1.08995 * 109.51153 * 172.22330 * 10 9 8 36 36 H 1.08996 * 109.47582 * 305.10660 * 14 12 11 37 37 H 1.08995 * 109.46915 * 185.10280 * 14 12 11 38 38 H 0.97004 * 120.00221 * 359.97438 * 15 14 12 39 39 H 1.08995 * 109.47213 * 299.99736 * 18 16 15 40 40 H 1.08996 * 109.47331 * 60.00149 * 18 16 15 41 41 H 0.96999 * 120.00022 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.64119 * 110.78076 * 28 8 6 43 43 H 1.09003 * 109.72961 * 350.22518 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 6 2.0324 -0.7106 1.2304 7 8 2.3233 -1.8866 1.1752 8 7 2.1583 -0.0390 2.3922 9 6 1.9126 1.4102 2.4598 10 6 0.9435 1.6829 3.6159 11 8 1.4445 1.0676 4.8051 12 6 1.5458 -0.3564 4.7293 13 1 0.5690 -0.7789 4.4943 14 6 2.0309 -0.9064 6.0721 15 7 1.0200 -0.6465 7.1001 16 6 1.2319 -1.0457 8.3698 17 8 2.2594 -1.6204 8.6612 18 6 0.1923 -0.7778 9.4274 19 16 0.7654 -1.4299 11.0156 20 6 -0.6013 -0.9914 12.0375 21 1 -1.4490 -0.4741 11.6129 22 6 -0.5885 -1.3107 13.3883 23 7 0.4444 -1.9415 13.9057 24 14 -2.0379 -0.8463 14.4715 25 1 -3.2683 -1.5013 13.9596 26 1 -1.7795 -1.2956 15.8632 27 1 -2.2174 0.6277 14.4530 28 6 2.5451 -0.7345 3.6301 29 1 -0.3633 0.5892 0.8420 30 1 -0.3633 0.4346 -0.9312 31 1 -0.3633 -1.0238 0.0893 32 1 1.4722 1.7521 1.5232 33 1 2.8520 1.9340 2.6370 34 1 -0.0354 1.2678 3.3759 35 1 0.8557 2.7581 3.7714 36 1 2.9648 -0.4173 6.3491 37 1 2.1946 -1.9806 5.9869 38 1 0.1980 -0.1872 6.8669 39 1 0.0293 0.2965 9.5128 40 1 -0.7419 -1.2662 9.1504 41 1 0.4535 -2.1643 14.8497 42 1 3.5486 -0.4273 3.9247 43 1 2.5232 -1.8123 3.4689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065557203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:27 Heat of formation + Delta-G solvation = -80.383497 kcal Electronic energy + Delta-G solvation = -26337.234444 eV Core-core repulsion = 22316.447267 eV Total energy + Delta-G solvation = -4020.787178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28209 -39.55622 -38.79272 -37.11444 -35.67419 -34.77188 -33.93280 -32.42669 -32.12989 -29.70734 -28.67420 -26.60544 -25.53994 -25.27808 -23.95646 -22.15171 -20.76283 -20.11628 -18.41140 -18.27463 -17.84907 -17.20724 -16.56312 -16.40999 -16.13297 -15.93826 -15.42154 -15.19753 -15.01099 -14.81273 -14.80130 -14.41880 -13.92886 -13.84021 -13.62019 -13.30664 -13.18545 -13.12764 -12.97352 -12.91798 -12.58510 -12.50300 -12.35744 -12.12047 -11.85965 -11.77138 -11.30076 -11.04351 -11.03762 -10.77216 -10.74730 -10.42732 -9.82496 -9.48072 -9.22107 -9.06278 -8.92506 -8.23598 -6.49593 -6.21155 -3.91794 1.73178 1.79110 2.21553 2.43081 3.00953 3.05806 3.12567 3.16753 3.23561 3.27511 3.30594 3.62538 3.67677 4.02946 4.10225 4.14190 4.20815 4.29205 4.34687 4.46309 4.58719 4.60365 4.77319 4.86414 4.99726 5.01285 5.10202 5.13882 5.16707 5.27468 5.32345 5.43613 5.56348 5.62956 5.77727 5.89674 6.14414 6.49955 6.53271 6.59794 6.96988 7.34408 7.59489 7.68105 8.35295 8.59550 9.23954 10.86191 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.001728 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.085267 B =16196.207496 C =16504.639536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.137 0.863 4 C 0.216 3.784 5 N -0.406 5.406 6 C 0.527 3.473 7 O -0.519 6.519 8 N -0.610 5.610 9 C 0.063 3.937 10 C 0.046 3.954 11 O -0.366 6.366 12 C 0.068 3.932 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.086 3.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.087 0.913 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 11.629 -28.492 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 H 0.154 0.846 4 C -0.103 4.103 5 N -0.080 5.080 6 C 0.312 3.688 7 O -0.393 6.393 8 N -0.344 5.344 9 C -0.059 4.059 10 C -0.031 4.031 11 O -0.284 6.284 12 C 0.009 3.991 13 H 0.092 0.908 14 C 0.007 3.993 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.037 4.037 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.849 9.221 -29.115 30.552 hybrid contribution -2.674 1.429 0.347 3.052 sum -1.825 10.649 -28.769 30.731 Atomic orbital electron populations 1.21801 0.88905 1.04836 1.04586 1.18867 0.99297 0.99892 0.85539 0.84592 1.28057 0.94129 0.94045 0.94066 1.81238 1.07517 1.07523 1.11772 1.20003 0.77970 0.87099 0.83720 1.90814 1.48554 1.15806 1.84166 1.48028 1.68998 1.08991 1.08432 1.22695 1.01778 0.80416 1.01040 1.23006 0.95628 0.99743 0.84738 1.88107 1.85846 1.18917 1.35559 1.22760 0.98932 0.82229 0.95144 0.90841 1.21189 0.92951 1.00712 0.84475 1.45839 1.22210 1.62401 1.08415 1.20303 0.87850 0.77732 0.82207 1.90710 1.27732 1.40126 1.80628 1.23518 1.00524 1.05313 1.00971 1.85404 1.27521 1.75680 0.94722 1.22830 1.05289 1.44342 0.96017 0.90967 1.24989 0.96855 0.94661 0.97042 1.70005 1.29033 1.37539 1.13690 0.86228 0.81469 0.78913 0.78901 1.19959 1.20819 1.19948 1.22291 0.98952 0.99931 0.82482 0.89811 0.89856 0.90580 0.88312 0.89425 0.92200 0.86999 0.90332 0.89675 0.76545 0.89141 0.89240 0.92126 0.89506 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.20 9.04 37.16 0.34 0.13 16 2 C -0.01 -0.04 2.27 -94.56 -0.21 -0.25 16 3 H 0.14 -0.05 6.36 -51.93 -0.33 -0.38 16 4 C 0.22 1.68 14.02 -20.76 -0.29 1.39 16 5 N -0.41 -4.49 18.54 42.15 0.78 -3.70 16 6 C 0.53 3.53 6.80 -10.98 -0.07 3.46 16 7 O -0.52 -5.99 15.74 5.56 0.09 -5.90 16 8 N -0.61 -3.08 3.02 -172.26 -0.52 -3.60 16 9 C 0.06 0.11 6.45 -3.53 -0.02 0.09 16 10 C 0.05 0.13 6.99 37.31 0.26 0.39 16 11 O -0.37 -2.52 10.33 -35.23 -0.36 -2.88 16 12 C 0.07 0.47 2.81 -26.58 -0.07 0.40 16 13 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 14 C 0.13 1.35 5.34 -4.04 -0.02 1.33 16 15 N -0.73 -9.16 5.50 -60.30 -0.33 -9.49 16 16 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 17 O -0.52 -11.48 15.86 5.56 0.09 -11.40 16 18 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.09 0.57 5.91 -3.53 -0.02 0.55 16 29 H 0.08 -0.05 7.79 -51.93 -0.40 -0.45 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 -0.14 5.21 -51.93 -0.27 -0.41 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.84 7.12 -51.93 -0.37 0.47 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -39.99 382.91 -6.70 -46.68 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.91 Total: -3.92 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 0.21 Total: 1.38 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.66 Total: -42.07 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.19 Total: -20.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.99 -6.70 -46.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065557203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.702 kcal (2) G-P(sol) polarization free energy of solvation -39.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds