Wall clock time and date at job start Tue Mar 31 2020 23:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47362 * 2 1 4 4 C 1.47205 * 109.47459 * 239.99887 * 2 1 3 5 5 N 2.60800 * 109.47266 * 239.99799 * 2 1 3 6 6 C 1.50703 * 109.46905 * 120.00109 * 2 1 3 7 7 O 1.21274 * 120.00360 * 98.04857 * 6 2 1 8 8 N 1.34777 * 119.99908 * 278.04590 * 6 2 1 9 9 C 1.47159 * 120.98107 * 355.23746 * 8 6 2 10 10 C 1.53295 * 108.38361 * 230.55252 * 9 8 6 11 11 O 1.42966 * 109.22127 * 307.70086 * 10 9 8 12 12 C 1.42956 * 114.17052 * 62.57976 * 11 10 9 13 13 H 1.08998 * 109.55840 * 57.36810 * 12 11 10 14 14 C 1.52997 * 109.51324 * 177.49533 * 12 11 10 15 15 N 1.46503 * 109.47249 * 299.74485 * 14 12 11 16 16 C 1.34776 * 120.00231 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00129 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47212 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00008 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99997 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00011 * 179.72775 * 22 20 19 25 25 H 1.48498 * 109.46972 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47263 * 119.99900 * 24 22 20 27 27 H 1.48495 * 109.47261 * 239.99928 * 24 22 20 28 28 C 1.47151 * 120.98214 * 175.25466 * 8 6 2 29 29 H 1.08999 * 109.47409 * 182.46980 * 1 2 3 30 30 H 1.08998 * 109.47517 * 302.47343 * 1 2 3 31 31 H 1.09004 * 109.46631 * 62.47544 * 1 2 3 32 32 H 1.08995 * 109.68023 * 350.27788 * 9 8 6 33 33 H 1.08997 * 109.68142 * 110.83031 * 9 8 6 34 34 H 1.09001 * 109.51377 * 67.61968 * 10 9 8 35 35 H 1.08994 * 109.51131 * 187.77402 * 10 9 8 36 36 H 1.09010 * 109.47302 * 179.74781 * 14 12 11 37 37 H 1.08994 * 109.47430 * 59.74759 * 14 12 11 38 38 H 0.96999 * 119.99672 * 359.97438 * 15 14 12 39 39 H 1.09002 * 109.46632 * 59.99673 * 18 16 15 40 40 H 1.08994 * 109.47056 * 300.00013 * 18 16 15 41 41 H 0.97002 * 119.99460 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.68055 * 9.72497 * 28 8 6 43 43 H 1.09006 * 109.71445 * 249.18520 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2295 -2.1294 6 6 2.0323 -0.7105 1.2305 7 8 2.3730 -1.8724 1.1632 8 7 2.1028 -0.0545 2.4057 9 6 1.7944 1.3819 2.4912 10 6 2.9440 2.0803 3.2266 11 8 3.1878 1.4083 4.4647 12 6 3.6065 0.0491 4.3205 13 1 4.5083 0.0079 3.7096 14 6 3.8964 -0.5455 5.7001 15 7 4.9626 0.2220 6.3485 16 6 5.3876 -0.1226 7.5802 17 8 4.8870 -1.0678 8.1520 18 6 6.4841 0.6672 8.2473 19 16 6.8271 -0.0363 9.8793 20 6 8.1084 1.0473 10.4165 21 1 8.4408 1.8503 9.7752 22 6 8.6906 0.8691 11.6638 23 7 8.2858 -0.1099 12.4452 24 14 10.0542 2.0132 12.2302 25 1 10.3271 3.0195 11.1728 26 1 9.6345 2.7055 13.4751 27 1 11.2847 1.2246 12.4932 28 6 2.4909 -0.7533 3.6412 29 1 -0.3634 -1.0267 0.0443 30 1 -0.3634 0.5517 0.8669 31 1 -0.3633 0.4749 -0.9114 32 1 1.6948 1.7963 1.4881 33 1 0.8651 1.5256 3.0423 34 1 3.8431 2.0473 2.6113 35 1 2.6738 3.1179 3.4224 36 1 4.2112 -1.5832 5.5897 37 1 2.9947 -0.5025 6.3110 38 1 5.3633 0.9776 5.8909 39 1 6.1686 1.7046 8.3582 40 1 7.3857 0.6249 7.6363 41 1 8.6925 -0.2342 13.3170 42 1 2.8525 -1.7528 3.3995 43 1 1.6319 -0.8251 4.3084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065557204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:30 Heat of formation + Delta-G solvation = -80.176330 kcal Electronic energy + Delta-G solvation = -26289.128085 eV Core-core repulsion = 22268.349890 eV Total energy + Delta-G solvation = -4020.778194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27487 -39.55409 -38.78155 -37.10584 -35.68063 -34.74973 -33.91823 -32.42465 -32.13225 -29.70015 -28.64892 -26.59289 -25.56555 -25.31701 -23.91677 -22.06810 -20.78773 -20.15367 -18.41119 -18.22559 -17.85960 -17.19715 -16.59246 -16.50108 -16.09095 -15.89230 -15.37552 -15.10601 -15.02523 -14.82461 -14.80019 -14.44473 -13.95582 -13.81512 -13.61127 -13.27290 -13.21471 -13.13858 -12.96421 -12.89008 -12.61161 -12.51058 -12.40656 -12.05337 -11.85488 -11.75409 -11.28494 -11.06805 -11.01369 -10.75734 -10.72149 -10.43424 -9.80307 -9.47177 -9.21901 -9.07461 -8.91111 -8.22355 -6.49157 -6.21350 -3.91615 1.71849 1.81837 2.22159 2.43402 3.00727 3.07182 3.13355 3.16360 3.21849 3.28441 3.32878 3.62579 3.69020 4.01009 4.08343 4.15337 4.20776 4.31438 4.35982 4.48575 4.59295 4.62189 4.79884 4.87843 4.99663 5.02029 5.11418 5.13959 5.17468 5.28552 5.30258 5.45221 5.56596 5.63114 5.77987 5.90598 6.15417 6.49864 6.53059 6.61823 6.97728 7.34588 7.60430 7.69919 8.35966 8.60625 9.24181 10.86137 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.001710 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.446878 B =16366.585143 C =16536.284581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 H 0.137 0.863 4 C 0.216 3.784 5 N -0.405 5.405 6 C 0.527 3.473 7 O -0.520 6.520 8 N -0.610 5.610 9 C 0.065 3.935 10 C 0.046 3.954 11 O -0.366 6.366 12 C 0.068 3.932 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.733 5.733 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.086 3.914 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.109 0.891 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 7.910 -25.594 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 H 0.154 0.846 4 C -0.104 4.104 5 N -0.080 5.080 6 C 0.312 3.688 7 O -0.394 6.394 8 N -0.344 5.344 9 C -0.058 4.058 10 C -0.032 4.032 11 O -0.284 6.284 12 C 0.009 3.991 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.037 4.037 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.603 4.857 -25.734 31.555 hybrid contribution 1.507 2.422 -0.413 2.883 sum -16.095 7.280 -26.147 31.555 Atomic orbital electron populations 1.21785 0.88892 1.04784 1.04611 1.18867 0.99337 0.99835 0.85501 0.84601 1.28061 0.94143 0.94074 0.94076 1.81236 1.07460 1.07499 1.11803 1.20002 0.78155 0.86982 0.83654 1.90813 1.47390 1.16642 1.84563 1.48020 1.68419 1.10224 1.07772 1.22690 1.00271 0.79990 1.02850 1.23011 0.96784 0.97068 0.86344 1.88093 1.87868 1.23843 1.28613 1.22762 0.96425 0.82727 0.97215 0.90898 1.21200 0.92234 0.95481 0.90352 1.45818 1.39601 1.34975 1.18395 1.20303 0.83154 0.84370 0.80266 1.90708 1.56877 1.28365 1.63309 1.23518 0.98800 1.03035 1.04958 1.85399 1.48146 1.42287 1.07566 1.22913 1.22710 1.17599 1.05090 0.90865 1.24996 0.97236 0.95857 0.95534 1.70031 1.41071 1.29376 1.09796 0.86115 0.80727 0.80019 0.78613 1.19630 1.20577 1.20583 1.22292 0.98776 0.97767 0.84861 0.90674 0.89688 0.89920 0.88397 0.89315 0.92295 0.86943 0.89715 0.90408 0.76472 0.89138 0.89250 0.92245 0.87320 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.19 9.12 37.16 0.34 0.15 16 2 C -0.01 -0.04 2.32 -94.56 -0.22 -0.26 16 3 H 0.14 -0.06 6.20 -51.93 -0.32 -0.38 16 4 C 0.22 1.68 13.99 -20.76 -0.29 1.39 16 5 N -0.41 -4.51 18.54 42.15 0.78 -3.73 16 6 C 0.53 3.51 6.83 -10.98 -0.08 3.44 16 7 O -0.52 -5.99 15.67 5.56 0.09 -5.91 16 8 N -0.61 -3.05 3.02 -172.27 -0.52 -3.57 16 9 C 0.06 0.11 6.18 -3.53 -0.02 0.09 16 10 C 0.05 0.15 6.99 37.31 0.26 0.41 16 11 O -0.37 -2.60 10.14 -35.23 -0.36 -2.96 16 12 C 0.07 0.49 2.86 -26.58 -0.08 0.42 16 13 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 14 C 0.13 1.38 5.37 -4.04 -0.02 1.36 16 15 N -0.73 -9.39 5.45 -60.29 -0.33 -9.72 16 16 C 0.53 9.73 7.85 -10.99 -0.09 9.65 16 17 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.81 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 24 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.09 0.56 5.94 -3.53 -0.02 0.54 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 -0.05 7.81 -51.93 -0.41 -0.45 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.10 -0.14 5.52 -51.93 -0.29 -0.43 16 33 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 4.17 8.36 -40.82 -0.34 3.83 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.11 0.85 7.06 -51.93 -0.37 0.49 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -40.11 382.56 -6.70 -46.80 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.92 Total: -3.76 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 0.21 Total: 1.47 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.67 Total: -42.38 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.18 Total: -20.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.11 -6.70 -46.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065557204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.373 kcal (2) G-P(sol) polarization free energy of solvation -40.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds