Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.52999 * 109.46917 * 119.99965 * 2 1 3 5 5 C 1.53003 * 109.46919 * 185.00382 * 4 2 1 6 6 N 1.46501 * 109.47278 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00182 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00309 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47141 * 180.02562 * 9 7 6 11 11 C 1.76202 * 99.99779 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00333 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00493 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99519 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47459 * 90.00263 * 15 13 11 17 17 H 1.48500 * 109.46920 * 209.99874 * 15 13 11 18 18 H 1.48500 * 109.47404 * 329.99855 * 15 13 11 19 19 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 20 20 C 1.34780 * 119.99566 * 85.00262 * 19 2 1 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47064 * 179.97438 * 22 20 19 24 24 C 1.41384 * 128.00526 * 269.67801 * 23 22 20 25 25 N 1.30178 * 106.39347 * 179.89665 * 24 23 22 26 26 O 1.20917 * 111.60526 * 0.38840 * 25 24 23 27 27 C 1.34049 * 111.56526 * 359.74749 * 26 25 24 28 28 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 31 31 H 1.08997 * 109.47088 * 305.00137 * 4 2 1 32 32 H 1.08998 * 109.47567 * 65.00347 * 4 2 1 33 33 H 1.09006 * 109.46993 * 300.00092 * 5 4 2 34 34 H 1.08997 * 109.47548 * 59.99717 * 5 4 2 35 35 H 0.96994 * 119.99895 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.46551 * 299.99707 * 9 7 6 37 37 H 1.08997 * 109.47293 * 59.99183 * 9 7 6 38 38 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 39 39 H 0.96995 * 120.00423 * 264.99567 * 19 2 1 40 40 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 41 41 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 42 42 H 1.07996 * 126.80303 * 0.03062 * 24 23 22 43 43 H 1.08005 * 126.77364 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3393 2.7755 8 8 6.1585 -0.8009 2.0234 9 6 5.8764 -2.0497 4.0060 10 16 7.6803 -1.9217 4.0823 11 6 7.9872 -2.8103 5.5725 12 1 7.1635 -3.2333 6.1284 13 6 9.2876 -2.9676 6.0315 14 7 9.5169 -3.6310 7.1450 15 14 10.7124 -2.2378 5.0688 16 1 10.9757 -0.8561 5.5452 17 1 11.9250 -3.0707 5.2716 18 1 10.3695 -2.2064 3.6243 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0182 -2.3571 21 8 1.8583 1.1584 -2.4117 22 6 2.6489 -0.7288 -3.5877 23 6 2.6992 0.2395 -4.7414 24 6 1.6839 0.5252 -5.6830 25 7 2.1730 1.4222 -6.4898 26 8 3.3086 1.7145 -6.1948 27 6 3.7294 1.0331 -5.1199 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0727 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7348 3.1111 36 1 5.4420 -1.5898 4.8936 37 1 5.5877 -3.0998 3.9626 38 1 10.4258 -3.7413 7.4655 39 1 2.2491 -1.6317 -1.1526 40 1 3.6481 -1.1213 -3.3985 41 1 1.9760 -1.5506 -3.8326 42 1 0.6973 0.0878 -5.7234 43 1 4.6986 1.1034 -4.6485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = -23.068192 kcal Electronic energy + Delta-G solvation = -25753.377909 eV Core-core repulsion = 21735.076109 eV Total energy + Delta-G solvation = -4018.301800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.26337 -40.33763 -39.32885 -37.06812 -34.97298 -34.57701 -32.65219 -32.47383 -32.02295 -30.34004 -28.97654 -28.28733 -25.65494 -23.92217 -23.32899 -22.61012 -21.43187 -20.80914 -20.45775 -18.30029 -18.02092 -17.89604 -17.34502 -16.83342 -16.33597 -16.13509 -15.72670 -15.60700 -15.13329 -14.99512 -14.41912 -14.19048 -14.04943 -13.88912 -13.72737 -13.46847 -13.40633 -13.02190 -12.82928 -12.56613 -12.44488 -12.33525 -11.78598 -11.69325 -11.60481 -11.37951 -11.29491 -11.03851 -10.74462 -10.64543 -10.32644 -9.89451 -9.75422 -9.63828 -9.51473 -9.08196 -9.01938 -8.54453 -6.96038 -6.32287 -4.04495 1.15342 1.84335 2.22589 2.70757 2.75194 2.90570 2.95474 3.24613 3.31015 3.47368 3.59329 3.88747 4.24331 4.26746 4.29837 4.34036 4.41074 4.53088 4.61741 4.69862 4.73780 4.91008 4.97988 5.00389 5.06803 5.17719 5.19750 5.27158 5.28659 5.29305 5.48242 5.59817 5.65020 5.72041 5.73348 5.79908 5.95779 6.06181 6.42872 7.03992 7.52027 7.80625 7.89847 7.90639 8.37899 8.41632 9.13828 10.76864 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.001839 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.564858 B =15218.051417 C =16699.931739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.726 5.726 20 C 0.515 3.485 21 O -0.530 6.530 22 C -0.065 4.065 23 C -0.189 4.189 24 C 0.003 3.997 25 N -0.367 5.367 26 O 0.097 5.903 27 C -0.039 4.039 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.402 0.598 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.187 0.813 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.388 3.248 -20.167 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.316 3.684 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.379 5.379 20 C 0.301 3.699 21 O -0.406 6.406 22 C -0.105 4.105 23 C -0.193 4.193 24 C -0.176 4.176 25 N -0.070 5.070 26 O 0.033 5.967 27 C -0.121 4.121 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.205 0.795 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -19.626 5.618 -22.410 30.314 hybrid contribution -0.347 -1.732 1.927 2.614 sum -19.973 3.886 -20.483 28.871 Atomic orbital electron populations 1.22162 0.94757 1.02280 1.02862 1.20886 0.94180 0.97748 0.83084 0.88920 1.22133 0.95352 1.02024 0.98321 1.21267 0.92696 0.97996 0.88319 1.45964 1.07736 1.58492 1.27123 1.20299 0.81633 0.79719 0.86776 1.90706 1.54994 1.44526 1.49105 1.23281 1.03106 1.03238 0.97887 1.84801 0.98057 1.73947 1.34764 1.22310 0.97295 1.39599 1.07781 0.89386 1.24715 0.98314 0.93871 0.94410 1.69934 1.21746 1.39436 1.20499 0.86734 0.82155 0.79915 0.83038 1.19191 1.19924 1.15937 1.46108 1.67936 1.14206 1.09682 1.20512 0.77643 0.87430 0.84331 1.90748 1.49106 1.15894 1.84824 1.19899 1.04702 0.96714 0.89219 1.20689 0.94465 1.03810 1.00381 1.24891 1.01969 0.97424 0.93294 1.73868 0.94234 1.15907 1.23020 1.84825 1.22367 1.51437 1.38069 1.25847 1.01793 0.94224 0.90259 0.92303 0.91359 0.91953 0.89346 0.90425 0.91592 0.91525 0.76645 0.88492 0.88458 0.91915 0.76349 0.87073 0.87278 0.79549 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.48 37.16 0.35 -0.55 16 2 C 0.15 0.90 2.57 -67.93 -0.17 0.72 16 3 H 0.09 0.78 7.58 -51.93 -0.39 0.39 16 4 C -0.14 -0.73 4.87 -26.73 -0.13 -0.86 16 5 C 0.12 1.10 5.56 -4.04 -0.02 1.08 16 6 N -0.74 -8.06 5.56 -60.29 -0.33 -8.39 16 7 C 0.53 8.77 7.85 -10.99 -0.09 8.68 16 8 O -0.52 -10.70 15.86 5.55 0.09 -10.61 16 9 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 10 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 11 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 12 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 13 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 14 N -0.88 -26.16 13.97 55.49 0.78 -25.38 16 15 Si 0.86 21.44 27.74 -169.99 -4.71 16.73 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 19 N -0.73 -3.94 4.53 -53.81 -0.24 -4.18 16 20 C 0.51 3.88 7.79 -10.98 -0.09 3.79 16 21 O -0.53 -6.39 15.70 5.56 0.09 -6.30 16 22 C -0.06 -0.31 6.28 -29.03 -0.18 -0.49 16 23 C -0.19 -1.39 4.82 -104.42 -0.50 -1.89 16 24 C 0.00 0.03 12.16 -17.06 -0.21 -0.18 16 25 N -0.37 -3.89 12.07 30.36 0.37 -3.52 16 26 O 0.10 0.93 11.20 17.15 0.19 1.13 16 27 C -0.04 -0.28 12.26 29.73 0.36 0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.14 8.47 -40.82 -0.35 2.80 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.40 1.22 8.60 -40.82 -0.35 0.87 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.22 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -38.44 387.75 -6.32 -44.76 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.14 Total: -1.11 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.24 Total: -3.46 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.56 Total: -41.48 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.37 Total: -15.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.44 -6.32 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.694 kcal (2) G-P(sol) polarization free energy of solvation -38.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds