Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.52999 * 109.46917 * 119.99965 * 2 1 3 5 5 C 1.53003 * 109.46919 * 185.00382 * 4 2 1 6 6 N 1.46501 * 109.47278 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00182 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00309 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47141 * 180.02562 * 9 7 6 11 11 C 1.76202 * 99.99779 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00333 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00493 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99519 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47459 * 90.00263 * 15 13 11 17 17 H 1.48500 * 109.46920 * 209.99874 * 15 13 11 18 18 H 1.48500 * 109.47404 * 329.99855 * 15 13 11 19 19 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 20 20 C 1.34780 * 119.99566 * 85.00262 * 19 2 1 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47064 * 179.97438 * 22 20 19 24 24 C 1.41384 * 128.00526 * 269.67801 * 23 22 20 25 25 N 1.30178 * 106.39347 * 179.89665 * 24 23 22 26 26 O 1.20917 * 111.60526 * 0.38840 * 25 24 23 27 27 C 1.34049 * 111.56526 * 359.74749 * 26 25 24 28 28 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 30 30 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 31 31 H 1.08997 * 109.47088 * 305.00137 * 4 2 1 32 32 H 1.08998 * 109.47567 * 65.00347 * 4 2 1 33 33 H 1.09006 * 109.46993 * 300.00092 * 5 4 2 34 34 H 1.08997 * 109.47548 * 59.99717 * 5 4 2 35 35 H 0.96994 * 119.99895 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.46551 * 299.99707 * 9 7 6 37 37 H 1.08997 * 109.47293 * 59.99183 * 9 7 6 38 38 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 39 39 H 0.96995 * 120.00423 * 264.99567 * 19 2 1 40 40 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 41 41 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 42 42 H 1.07996 * 126.80303 * 0.03062 * 24 23 22 43 43 H 1.08005 * 126.77364 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3740 -1.3393 2.7755 8 8 6.1585 -0.8009 2.0234 9 6 5.8764 -2.0497 4.0060 10 16 7.6803 -1.9217 4.0823 11 6 7.9872 -2.8103 5.5725 12 1 7.1635 -3.2333 6.1284 13 6 9.2876 -2.9676 6.0315 14 7 9.5169 -3.6310 7.1450 15 14 10.7124 -2.2378 5.0688 16 1 10.9757 -0.8561 5.5452 17 1 11.9250 -3.0707 5.2716 18 1 10.3695 -2.2064 3.6243 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0182 -2.3571 21 8 1.8583 1.1584 -2.4117 22 6 2.6489 -0.7288 -3.5877 23 6 2.6992 0.2395 -4.7414 24 6 1.6839 0.5252 -5.6830 25 7 2.1730 1.4222 -6.4898 26 8 3.3086 1.7145 -6.1948 27 6 3.7294 1.0331 -5.1199 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0727 0.4260 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7348 3.1111 36 1 5.4420 -1.5898 4.8936 37 1 5.5877 -3.0998 3.9626 38 1 10.4258 -3.7413 7.4655 39 1 2.2491 -1.6317 -1.1526 40 1 3.6481 -1.1213 -3.3985 41 1 1.9760 -1.5506 -3.8326 42 1 0.6973 0.0878 -5.7234 43 1 4.6986 1.1034 -4.6485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075679332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = -52.575680 kcal Electronic energy + Delta-G solvation = -25754.657449 eV Core-core repulsion = 21735.076109 eV Total energy + Delta-G solvation = -4019.581340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.88406 -40.96718 -40.51264 -37.74401 -35.66193 -35.43502 -34.65877 -33.27901 -32.70020 -31.41804 -29.52805 -29.14529 -27.82981 -24.61062 -23.95803 -23.20738 -22.10447 -21.54568 -21.35229 -19.87362 -18.86862 -18.61040 -17.99785 -17.78624 -17.35586 -17.15078 -17.00855 -16.65193 -16.30986 -15.80508 -15.66138 -15.18026 -14.95656 -14.80206 -14.76801 -14.46480 -14.29017 -13.95918 -13.61603 -13.59770 -13.33078 -13.03493 -13.00852 -12.92645 -12.70050 -12.40389 -12.34164 -12.16439 -11.90618 -11.83910 -11.38035 -11.16122 -11.00220 -10.95561 -10.51507 -10.31487 -10.17093 -10.01764 -8.97922 -8.50415 -6.20934 0.58072 1.01236 1.26297 1.32541 1.48009 1.57688 1.59417 1.68970 2.23765 2.27602 2.29047 2.45633 2.73590 2.88000 3.37350 3.73173 3.77805 3.80738 3.85507 4.02406 4.07325 4.12124 4.25938 4.27165 4.45986 4.50408 4.51309 4.61481 4.65470 4.75776 4.81541 4.83881 4.92272 5.05770 5.12993 5.18220 5.33041 5.44161 5.58354 5.71817 6.12742 6.50803 6.60917 6.95061 7.23436 7.29388 7.32512 8.61759 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.001839 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.564858 B =15218.051417 C =16699.931739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.064 0.936 4 C -0.123 4.123 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.565 6.565 9 C -0.112 4.112 10 S -0.179 6.179 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.045 3.955 14 N -0.917 5.917 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.235 1.235 19 N -0.715 5.715 20 C 0.512 3.488 21 O -0.583 6.583 22 C -0.058 4.058 23 C -0.197 4.197 24 C -0.002 4.002 25 N -0.403 5.403 26 O 0.077 5.923 27 C -0.043 4.043 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.419 0.581 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.417 0.583 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.207 0.793 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.585 2.017 -20.450 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.161 4.161 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.444 6.444 9 C -0.262 4.262 10 S 0.047 5.953 11 C -0.676 4.676 12 H 0.081 0.919 13 C -0.160 4.160 14 N -0.555 5.555 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.184 1.184 18 H -0.159 1.159 19 N -0.368 5.368 20 C 0.299 3.701 21 O -0.463 6.463 22 C -0.098 4.098 23 C -0.202 4.202 24 C -0.181 4.181 25 N -0.111 5.111 26 O 0.016 5.984 27 C -0.125 4.125 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.256 0.744 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.224 0.776 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.863 4.336 -22.665 31.108 hybrid contribution -0.159 -1.364 2.051 2.468 sum -21.021 2.972 -20.614 29.592 Atomic orbital electron populations 1.22092 0.93938 1.03182 1.02171 1.20809 0.94701 0.96627 0.83733 0.91742 1.22037 0.92080 1.03748 0.98266 1.21399 0.95295 0.96459 0.87176 1.45701 1.05952 1.57101 1.27652 1.19961 0.83153 0.79316 0.85705 1.90699 1.56591 1.46705 1.50358 1.23281 0.97983 1.05127 0.99854 1.84740 1.04507 1.73374 1.32632 1.22466 0.96770 1.39409 1.08920 0.91853 1.25559 1.00838 0.94321 0.95307 1.70012 1.22700 1.40796 1.21953 0.85877 0.79551 0.79358 0.81644 1.18901 1.18446 1.15929 1.46036 1.66945 1.14844 1.08969 1.21012 0.76773 0.86868 0.85408 1.90735 1.51589 1.18259 1.85677 1.20012 1.06683 0.96370 0.86729 1.21061 0.93924 1.04301 1.00878 1.25384 1.03005 0.96686 0.93009 1.73851 0.94998 1.17528 1.24683 1.84773 1.22297 1.52182 1.39129 1.26499 1.03017 0.93482 0.89481 0.90501 0.90588 0.94190 0.88004 0.87636 0.91655 0.93593 0.74350 0.86934 0.86524 0.91414 0.74536 0.84681 0.84276 0.77608 0.73977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 71.98 0.68 -0.70 16 2 C 0.15 1.49 2.57 44.99 0.12 1.60 16 3 H 0.06 1.06 7.58 -2.39 -0.02 1.04 16 4 C -0.12 -0.83 4.87 30.59 0.15 -0.69 16 5 C 0.12 1.86 5.56 86.38 0.48 2.34 16 6 N -0.71 -13.15 5.56 -463.05 -2.57 -15.72 16 7 C 0.53 16.48 7.85 87.66 0.69 17.16 16 8 O -0.57 -22.65 15.86 -3.04 -0.05 -22.70 16 9 C -0.11 -3.86 6.16 71.24 0.44 -3.43 16 10 S -0.18 -8.73 18.55 -56.49 -1.05 -9.77 16 11 C -0.53 -29.94 10.04 67.95 0.68 -29.26 16 12 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 13 C 0.05 2.60 5.50 84.86 0.47 3.07 16 14 N -0.92 -54.86 13.97 21.65 0.30 -54.56 16 15 Si 0.91 44.16 27.74 68.60 1.90 46.06 16 16 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 19 N -0.71 -5.96 4.53 -442.54 -2.00 -7.96 16 20 C 0.51 6.90 7.79 87.66 0.68 7.59 16 21 O -0.58 -14.03 15.70 -3.03 -0.05 -14.08 16 22 C -0.06 -0.40 6.28 29.10 0.18 -0.21 16 23 C -0.20 -2.67 4.82 -19.74 -0.10 -2.76 16 24 C 0.00 -0.03 12.16 85.71 1.04 1.01 16 25 N -0.40 -8.80 12.07 -59.26 -0.72 -9.52 16 26 O 0.08 1.53 11.20 71.55 0.80 2.33 16 27 C -0.04 -0.61 12.26 67.17 0.82 0.22 16 28 H 0.08 0.41 8.14 -2.38 -0.02 0.40 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.07 1.07 7.75 -2.38 -0.02 1.05 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.42 4.73 8.47 -92.71 -0.79 3.95 16 36 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 37 H 0.12 3.61 8.14 -2.40 -0.02 3.59 16 38 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.42 0.95 8.60 -92.71 -0.80 0.15 16 40 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.24 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -86.99 387.75 2.34 -84.65 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -0.57 Total: 5.32 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.34 Total: -4.06 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -4.99 Total: -87.75 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: 0.71 Total: -34.45 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.77 kcal Total: -86.99 2.34 -84.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.075 kcal (2) G-P(sol) polarization free energy of solvation -86.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds