Wall clock time and date at job start Tue Mar 31 2020 23:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.53005 * 109.47189 * 119.99623 * 2 1 3 5 5 C 1.52993 * 109.47294 * 184.99889 * 4 2 1 6 6 N 1.46502 * 109.47132 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00100 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00230 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.47454 * 179.97438 * 9 7 6 11 11 C 1.41379 * 126.80093 * 124.70578 * 10 9 7 12 12 C 1.35446 * 103.98652 * 180.26598 * 11 10 9 13 13 O 1.34044 * 106.44743 * 0.02562 * 12 11 10 14 14 N 1.20918 * 111.56370 * 359.97438 * 13 12 11 15 15 N 1.46497 * 109.47381 * 239.99747 * 2 1 3 16 16 C 1.34771 * 120.00099 * 84.99780 * 15 2 1 17 17 O 1.21286 * 120.00057 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00036 * 179.97438 * 16 15 2 19 19 S 1.80999 * 109.47026 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00131 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99964 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00574 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99391 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00550 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47103 * 59.99478 * 24 22 20 26 26 H 1.48499 * 109.47376 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46864 * 299.99693 * 24 22 20 28 28 H 1.09003 * 109.47230 * 300.00544 * 1 2 3 29 29 H 1.09002 * 109.46822 * 60.00384 * 1 2 3 30 30 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46614 * 64.99864 * 4 2 1 32 32 H 1.08997 * 109.46724 * 305.00477 * 4 2 1 33 33 H 1.09011 * 109.47155 * 60.00166 * 5 4 2 34 34 H 1.08996 * 109.47734 * 300.00537 * 5 4 2 35 35 H 0.97002 * 120.00007 * 359.97438 * 6 5 4 36 36 H 1.09006 * 109.47404 * 59.99571 * 9 7 6 37 37 H 1.08999 * 109.47380 * 299.99809 * 9 7 6 38 38 H 1.08001 * 128.00721 * 0.25149 * 11 10 9 39 39 H 1.08004 * 126.77907 * 179.97438 * 12 11 10 40 40 H 0.96999 * 120.00045 * 264.99944 * 15 2 1 41 41 H 1.08997 * 109.47215 * 300.00451 * 18 16 15 42 42 H 1.09003 * 109.46765 * 60.00436 * 18 16 15 43 43 H 0.97000 * 119.99675 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3033 2.5103 7 6 5.3738 -1.3386 2.7761 8 8 6.1583 -0.7994 2.0244 9 6 5.8762 -2.0488 4.0066 10 6 7.3781 -1.9424 4.0702 11 6 8.1463 -1.4315 5.1414 12 6 9.4255 -1.5471 4.7112 13 8 9.3663 -2.0850 3.4849 14 7 8.2248 -2.2970 3.1472 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8590 1.1585 -2.4115 18 6 2.6500 -0.7287 -3.5873 19 16 2.7115 0.4344 -4.9728 20 6 3.3145 -0.6309 -6.2401 21 1 3.5232 -1.6675 -6.0203 22 6 3.5215 -0.1379 -7.5210 23 7 3.2667 1.1254 -7.7891 24 14 4.1601 -1.2674 -8.8647 25 1 3.2081 -2.3899 -9.0618 26 1 4.2946 -0.5036 -10.1311 27 1 5.4862 -1.8066 -8.4693 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1369 33 1 3.8532 0.4371 1.3574 34 1 3.9995 -1.0727 0.4261 35 1 3.4256 -1.7341 3.1117 36 1 5.5882 -3.0992 3.9629 37 1 5.4412 -1.5895 4.8942 38 1 7.7947 -1.0396 6.0844 39 1 10.3171 -1.2614 5.2496 40 1 2.2491 -1.6318 -1.1525 41 1 3.6493 -1.1205 -3.3977 42 1 1.9778 -1.5511 -3.8324 43 1 3.4117 1.4700 -8.6841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075988547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:58 Heat of formation + Delta-G solvation = -21.223316 kcal Electronic energy + Delta-G solvation = -25793.169790 eV Core-core repulsion = 21774.947990 eV Total energy + Delta-G solvation = -4018.221800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.23376 -40.07048 -39.36258 -36.69037 -35.01218 -34.63694 -32.39386 -32.10831 -31.86466 -30.43715 -28.80280 -28.36923 -25.44896 -23.99959 -23.45283 -22.00746 -21.61260 -20.51303 -20.30494 -18.15634 -18.01146 -17.79742 -17.16388 -16.61609 -16.41883 -16.06321 -15.74739 -15.24366 -14.83954 -14.77015 -14.54306 -14.06471 -13.95922 -13.66240 -13.60340 -13.34820 -13.21308 -12.89038 -12.76827 -12.61331 -12.14874 -11.93271 -11.75469 -11.58556 -11.53052 -11.09704 -11.00941 -11.00244 -10.73379 -10.59112 -10.10819 -9.93344 -9.79017 -9.41164 -9.36382 -9.02980 -8.90291 -8.20599 -6.46136 -6.18041 -3.88356 1.23172 1.83638 2.32270 2.80295 2.98594 3.05624 3.11997 3.26680 3.30295 3.34088 3.70458 3.73473 4.11800 4.24083 4.39914 4.45653 4.65458 4.70613 4.72879 4.78561 4.85916 5.07209 5.16941 5.17461 5.21571 5.30396 5.30711 5.34232 5.54912 5.60933 5.61200 5.68240 5.75681 5.92542 6.00108 6.06824 6.15934 6.18607 6.66290 7.10636 7.62854 7.71646 7.90204 7.99870 8.38651 8.63740 9.27159 10.89359 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.002085 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.897459 B =13425.615428 C =15664.467936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.117 3.883 6 N -0.732 5.732 7 C 0.510 3.490 8 O -0.518 6.518 9 C -0.060 4.060 10 C 0.018 3.982 11 C -0.230 4.230 12 C -0.062 4.062 13 O 0.107 5.893 14 N -0.334 5.334 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.172 0.828 39 H 0.216 0.784 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -9.023 32.777 34.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.385 5.385 7 C 0.294 3.706 8 O -0.392 6.392 9 C -0.101 4.101 10 C -0.142 4.142 11 C -0.252 4.252 12 C -0.143 4.143 13 O 0.037 5.963 14 N -0.034 5.034 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.189 0.811 39 H 0.233 0.767 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.401 -7.032 30.747 31.633 hybrid contribution 0.393 -2.358 0.445 2.432 sum 2.795 -9.390 31.193 32.695 Atomic orbital electron populations 1.22172 0.94996 1.02089 1.02835 1.20776 0.94161 0.97757 0.83241 0.89087 1.22101 0.94481 1.02061 0.98826 1.21423 0.93602 0.98030 0.87583 1.45943 1.07238 1.57846 1.27452 1.20336 0.82394 0.80827 0.87013 1.90819 1.55040 1.44379 1.48943 1.19965 0.88405 1.03292 0.98427 1.22858 0.96926 1.02838 0.91544 1.22671 0.92517 1.07797 1.02193 1.26032 1.00678 1.00614 0.86986 1.84901 1.23428 1.58864 1.29135 1.73926 0.89595 1.18189 1.21694 1.46125 1.69510 1.13877 1.09572 1.20298 0.76688 0.87214 0.83765 1.90698 1.48252 1.15715 1.84394 1.23541 1.03687 1.04856 0.98428 1.85369 1.86253 1.12940 0.98735 1.22830 1.51068 0.98100 0.96376 0.91001 1.24992 0.95104 0.95554 0.97954 1.70011 1.45511 1.13202 1.21595 0.86224 0.79344 0.80000 0.79935 1.19957 1.20814 1.19923 0.91885 0.91414 0.92536 0.90607 0.89739 0.91092 0.90820 0.76640 0.86925 0.86597 0.81094 0.76720 0.76924 0.89232 0.89274 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 2 C 0.15 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.08 5.56 -4.04 -0.02 1.06 16 6 N -0.73 -5.28 5.56 -60.30 -0.33 -5.61 16 7 C 0.51 5.20 7.82 -10.99 -0.09 5.12 16 8 O -0.52 -8.29 15.59 5.55 0.09 -8.21 16 9 C -0.06 -0.38 6.30 -29.04 -0.18 -0.57 16 10 C 0.02 0.17 6.11 -82.10 -0.50 -0.33 16 11 C -0.23 -1.49 11.12 -39.38 -0.44 -1.93 16 12 C -0.06 -0.38 12.30 29.74 0.37 -0.01 16 13 O 0.11 1.11 11.20 17.17 0.19 1.30 16 14 N -0.33 -4.18 11.46 33.42 0.38 -3.80 16 15 N -0.74 -9.50 4.53 -53.81 -0.24 -9.75 16 16 C 0.53 9.99 7.81 -10.99 -0.09 9.90 16 17 O -0.52 -11.71 15.52 5.55 0.09 -11.63 16 18 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.60 9.50 30.94 0.29 -15.31 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 24 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.07 0.86 7.75 -51.93 -0.40 0.45 16 35 H 0.40 1.33 8.47 -40.82 -0.35 0.98 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.22 0.31 8.06 -52.48 -0.42 -0.11 16 40 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 41 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -41.42 389.67 -7.05 -48.48 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.11 Total: 0.18 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.48 Total: -3.93 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.54 Total: -45.08 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.36 Total: -18.54 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.42 -7.05 -48.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075988547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.252 kcal (2) G-P(sol) polarization free energy of solvation -41.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds