Wall clock time and date at job start Tue Mar 31 2020 22:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00114 * 2 1 4 4 H 1.09003 * 109.46969 * 30.00324 * 3 2 1 5 5 C 1.52999 * 109.47438 * 270.00709 * 3 2 1 6 6 C 1.50702 * 109.47436 * 150.00076 * 3 2 1 7 7 N 1.28638 * 124.72521 * 225.29880 * 6 3 2 8 8 C 1.33561 * 115.76869 * 180.18704 * 7 6 3 9 9 C 1.47265 * 123.14163 * 179.82782 * 8 7 6 10 10 O 1.21633 * 120.00151 * 179.73070 * 9 8 7 11 11 N 1.34779 * 119.99861 * 359.72738 * 9 8 7 12 12 C 1.46505 * 119.99500 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.64189 * 34.30160 * 12 11 9 14 14 C 1.54321 * 110.72218 * 271.15678 * 12 11 9 15 15 N 1.47019 * 107.27531 * 219.26939 * 14 12 11 16 16 C 1.36934 * 125.65046 * 178.97751 * 15 14 12 17 17 H 1.08004 * 119.99872 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99812 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47247 * 120.00114 * 20 18 16 23 23 H 1.48501 * 109.46963 * 239.99435 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 12 25 25 C 1.55157 * 110.71610 * 157.44358 * 12 11 9 26 26 H 1.09001 * 111.00741 * 35.97140 * 25 12 11 27 27 O 1.42905 * 111.00350 * 272.11375 * 25 12 11 28 28 C 1.35207 * 113.71645 * 359.55690 * 8 7 6 29 29 S 1.70766 * 124.71323 * 45.02536 * 6 3 2 30 30 H 1.09001 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46851 * 299.99840 * 1 2 3 32 32 H 1.08995 * 109.47135 * 59.99908 * 1 2 3 33 33 H 1.09001 * 109.47537 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46726 * 299.99764 * 5 3 2 35 35 H 1.08997 * 109.47097 * 59.99432 * 5 3 2 36 36 H 0.96996 * 120.00112 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.88480 * 338.69050 * 14 12 11 38 38 H 1.09003 * 109.88132 * 99.69456 * 14 12 11 39 39 H 0.96999 * 120.00486 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 41 41 H 1.08999 * 110.36356 * 265.28933 * 24 15 14 42 42 H 0.96704 * 113.99865 * 180.02562 * 27 25 12 43 43 H 1.07989 * 125.58815 * 180.19477 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 3.7304 2.1244 1.5827 8 6 4.9450 1.9170 2.0981 9 6 5.5543 2.8024 3.1048 10 8 6.6634 2.5565 3.5395 11 7 4.8830 3.8853 3.5445 12 6 5.4895 4.7664 4.5456 13 1 6.5687 4.8238 4.4036 14 6 5.1513 4.2857 5.9725 15 7 4.8962 5.4826 6.7874 16 6 4.5432 5.4869 8.1104 17 1 4.4304 4.5537 8.6423 18 6 4.3294 6.6907 8.7677 19 7 4.4664 7.8279 8.1195 20 14 3.8485 6.6967 10.5728 21 1 3.7615 5.2989 11.0665 22 1 4.8717 7.4357 11.3552 23 1 2.5296 7.3603 10.7315 24 6 5.0843 6.6773 5.9443 25 6 4.8524 6.1801 4.4905 26 1 3.7882 6.1205 4.2627 27 8 5.5306 7.0110 3.5462 28 6 5.5605 0.8150 1.6135 29 16 4.5307 0.0641 0.4742 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.6614 2.7670 -1.4425 34 1 2.8828 1.0775 -1.9564 35 1 1.2568 1.8015 -1.9562 36 1 3.9984 4.0812 3.1981 37 1 4.2620 3.6558 5.9506 38 1 5.9914 3.7263 6.3841 39 1 4.3173 8.6691 8.5788 40 1 4.3537 7.4434 6.2038 41 1 6.0971 7.0644 6.0556 42 1 5.1680 7.9048 3.4770 43 1 6.5420 0.4666 1.8989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076999323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:43 Heat of formation + Delta-G solvation = -49.185788 kcal Electronic energy + Delta-G solvation = -27200.532843 eV Core-core repulsion = 23181.098500 eV Total energy + Delta-G solvation = -4019.434343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63162 -39.21906 -38.43035 -37.54826 -35.06373 -34.03323 -32.89399 -31.69108 -29.95080 -28.53313 -27.32885 -27.16597 -25.82725 -24.57040 -23.49337 -21.43569 -20.64288 -20.11198 -19.86327 -18.87542 -17.16424 -16.94979 -16.76665 -16.48856 -16.35497 -15.86086 -15.50755 -15.18443 -14.82397 -14.35616 -14.16049 -13.83488 -13.73233 -13.37922 -13.25892 -13.14050 -12.89320 -12.74889 -12.30825 -12.16443 -12.09636 -11.87958 -11.52044 -11.49027 -11.27042 -10.98536 -10.84886 -10.35522 -10.17628 -10.10720 -10.03026 -9.90706 -9.86331 -9.71305 -9.27956 -9.16934 -8.72560 -8.71600 -6.91232 -5.71640 -3.13985 0.30055 0.99185 1.42807 1.80615 2.92355 3.36872 3.39272 3.41529 3.44312 3.46661 3.95787 4.39523 4.44315 4.61422 4.63288 4.68108 4.87651 4.97032 5.01720 5.08365 5.19906 5.27216 5.28192 5.30529 5.42575 5.60372 5.65219 5.65953 5.70546 5.87220 6.10623 6.20886 6.48475 6.55953 6.68104 6.91357 7.16886 7.32866 7.53765 7.70023 7.77463 8.11571 8.25789 8.36075 9.14561 9.74855 10.37497 11.32696 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002485 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.914351 B =11262.692509 C =11686.557638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.169 4.169 6 C 0.016 3.984 7 N -0.434 5.434 8 C 0.016 3.984 9 C 0.593 3.407 10 O -0.534 6.534 11 N -0.694 5.694 12 C 0.140 3.860 13 H 0.102 0.898 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.131 3.869 25 C 0.067 3.933 26 H 0.063 0.937 27 O -0.565 6.565 28 C -0.230 4.230 29 S 0.246 5.754 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.113 0.887 41 H 0.026 0.974 42 H 0.377 0.623 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -13.575 -21.951 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.263 4.263 7 N -0.151 5.151 8 C -0.119 4.119 9 C 0.375 3.625 10 O -0.411 6.411 11 N -0.344 5.344 12 C 0.036 3.964 13 H 0.120 0.880 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.005 3.995 25 C 0.007 3.993 26 H 0.080 0.920 27 O -0.370 6.370 28 C -0.373 4.373 29 S 0.504 5.496 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.044 0.956 42 H 0.224 0.776 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.042 -14.744 -22.004 27.168 hybrid contribution -0.733 1.427 1.608 2.271 sum -6.775 -13.318 -20.396 25.284 Atomic orbital electron populations 1.22863 0.79704 1.03330 1.00554 1.87895 1.20718 1.26359 1.95121 1.20294 0.88352 0.86145 0.94988 0.88734 1.22301 1.03360 1.02563 0.94561 1.26706 1.02037 0.96940 1.00627 1.66826 1.12892 1.27108 1.08228 1.20443 0.91166 0.97900 1.02438 1.17021 0.84712 0.80483 0.80254 1.90824 1.19178 1.72755 1.58351 1.45805 1.20941 1.25441 1.42204 1.22089 0.99144 0.87479 0.87732 0.87986 1.21622 0.98266 0.91257 0.88548 1.44292 1.81193 0.99740 1.07539 1.19161 1.38573 0.93146 0.84006 0.90135 1.24802 1.02029 0.95138 0.98713 1.69743 1.56130 0.96703 1.34725 0.85943 0.77729 0.77421 0.84084 1.20452 1.21657 1.21703 1.22631 1.01559 0.91685 0.83621 1.23724 0.94107 0.89531 0.91987 0.91955 1.86413 1.61000 1.27271 1.62282 1.26765 1.07255 0.99944 1.03295 1.82851 1.05578 1.26277 1.34936 0.89067 0.93384 0.93537 0.90578 0.91287 0.90955 0.75771 0.95141 0.94731 0.93653 0.86925 0.95590 0.77585 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.15 10.17 -35.23 -0.36 -3.51 16 3 C 0.16 1.35 3.23 -27.88 -0.09 1.26 16 4 H 0.09 0.75 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.05 9.51 37.16 0.35 -0.70 16 6 C 0.02 0.17 6.30 -13.61 -0.09 0.09 16 7 N -0.43 -5.75 10.12 -8.51 -0.09 -5.83 16 8 C 0.02 0.23 6.70 -84.53 -0.57 -0.33 16 9 C 0.59 10.45 7.80 -12.59 -0.10 10.35 16 10 O -0.53 -10.89 16.40 5.25 0.09 -10.80 16 11 N -0.69 -12.07 5.11 -53.15 -0.27 -12.34 16 12 C 0.14 2.81 3.00 -66.09 -0.20 2.61 16 13 H 0.10 2.22 7.62 -51.93 -0.40 1.83 16 14 C 0.13 2.95 6.99 -3.07 -0.02 2.92 16 15 N -0.60 -15.66 3.40 -169.76 -0.58 -16.23 16 16 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 20 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.13 3.17 5.65 -2.26 -0.01 3.16 16 25 C 0.07 1.31 4.07 -24.32 -0.10 1.21 16 26 H 0.06 1.14 8.01 -51.93 -0.42 0.73 16 27 O -0.56 -10.04 13.48 -35.23 -0.48 -10.52 16 28 C -0.23 -2.75 10.62 29.65 0.31 -2.44 16 29 S 0.25 2.26 22.73 -107.50 -2.44 -0.19 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.05 0.18 7.87 -51.93 -0.41 -0.23 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 36 H 0.41 6.39 8.06 -40.82 -0.33 6.06 16 37 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.38 5.08 9.12 45.56 0.42 5.50 16 43 H 0.19 2.06 8.03 -52.49 -0.42 1.64 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -33.97 376.02 -7.75 -41.72 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.17 Total: 8.38 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 0.34 Total: 12.62 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.37 Total: -60.40 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.75 Total: -24.83 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.44 Total: -0.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.97 -7.75 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.467 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds