Wall clock time and date at job start Tue Mar 31 2020 22:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00114 * 2 1 4 4 H 1.09003 * 109.46969 * 30.00324 * 3 2 1 5 5 C 1.52999 * 109.47438 * 270.00709 * 3 2 1 6 6 C 1.50702 * 109.47436 * 150.00076 * 3 2 1 7 7 N 1.28638 * 124.72521 * 225.29880 * 6 3 2 8 8 C 1.33561 * 115.76869 * 180.18704 * 7 6 3 9 9 C 1.47265 * 123.14163 * 179.82782 * 8 7 6 10 10 O 1.21633 * 120.00151 * 179.73070 * 9 8 7 11 11 N 1.34779 * 119.99861 * 359.72738 * 9 8 7 12 12 C 1.46505 * 119.99500 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.64189 * 34.30160 * 12 11 9 14 14 C 1.54321 * 110.72218 * 271.15678 * 12 11 9 15 15 N 1.47019 * 107.27531 * 219.26939 * 14 12 11 16 16 C 1.36934 * 125.65046 * 178.97751 * 15 14 12 17 17 H 1.08004 * 119.99872 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99970 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99812 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47425 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47247 * 120.00114 * 20 18 16 23 23 H 1.48501 * 109.46963 * 239.99435 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 12 25 25 C 1.55157 * 110.71610 * 157.44358 * 12 11 9 26 26 H 1.09001 * 111.00741 * 35.97140 * 25 12 11 27 27 O 1.42905 * 111.00350 * 272.11375 * 25 12 11 28 28 C 1.35207 * 113.71645 * 359.55690 * 8 7 6 29 29 S 1.70766 * 124.71323 * 45.02536 * 6 3 2 30 30 H 1.09001 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46851 * 299.99840 * 1 2 3 32 32 H 1.08995 * 109.47135 * 59.99908 * 1 2 3 33 33 H 1.09001 * 109.47537 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46726 * 299.99764 * 5 3 2 35 35 H 1.08997 * 109.47097 * 59.99432 * 5 3 2 36 36 H 0.96996 * 120.00112 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.88480 * 338.69050 * 14 12 11 38 38 H 1.09003 * 109.88132 * 99.69456 * 14 12 11 39 39 H 0.96999 * 120.00486 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 41 41 H 1.08999 * 110.36356 * 265.28933 * 24 15 14 42 42 H 0.96704 * 113.99865 * 180.02562 * 27 25 12 43 43 H 1.07989 * 125.58815 * 180.19477 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 3.7304 2.1244 1.5827 8 6 4.9450 1.9170 2.0981 9 6 5.5543 2.8024 3.1048 10 8 6.6634 2.5565 3.5395 11 7 4.8830 3.8853 3.5445 12 6 5.4895 4.7664 4.5456 13 1 6.5687 4.8238 4.4036 14 6 5.1513 4.2857 5.9725 15 7 4.8962 5.4826 6.7874 16 6 4.5432 5.4869 8.1104 17 1 4.4304 4.5537 8.6423 18 6 4.3294 6.6907 8.7677 19 7 4.4664 7.8279 8.1195 20 14 3.8485 6.6967 10.5728 21 1 3.7615 5.2989 11.0665 22 1 4.8717 7.4357 11.3552 23 1 2.5296 7.3603 10.7315 24 6 5.0843 6.6773 5.9443 25 6 4.8524 6.1801 4.4905 26 1 3.7882 6.1205 4.2627 27 8 5.5306 7.0110 3.5462 28 6 5.5605 0.8150 1.6135 29 16 4.5307 0.0641 0.4742 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.6614 2.7670 -1.4425 34 1 2.8828 1.0775 -1.9564 35 1 1.2568 1.8015 -1.9562 36 1 3.9984 4.0812 3.1981 37 1 4.2620 3.6558 5.9506 38 1 5.9914 3.7263 6.3841 39 1 4.3173 8.6691 8.5788 40 1 4.3537 7.4434 6.2038 41 1 6.0971 7.0644 6.0556 42 1 5.1680 7.9048 3.4770 43 1 6.5420 0.4666 1.8989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076999323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:43 Heat of formation + Delta-G solvation = -77.155126 kcal Electronic energy + Delta-G solvation = -27201.745685 eV Core-core repulsion = 23181.098500 eV Total energy + Delta-G solvation = -4020.647185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74914 -40.45041 -39.40612 -38.85148 -36.73131 -35.67796 -33.74415 -33.47041 -30.81598 -30.31377 -28.93093 -27.76875 -27.06683 -26.12090 -24.58654 -22.59495 -22.22387 -21.74672 -21.00550 -19.94912 -19.07243 -18.43854 -17.70028 -17.44376 -17.26334 -17.11965 -16.65174 -16.47237 -16.15273 -15.79064 -15.56085 -15.09607 -14.98689 -14.83087 -14.64889 -14.05107 -14.00020 -13.77179 -13.62697 -13.28149 -13.25896 -13.18758 -12.96576 -12.84989 -12.76503 -12.62137 -12.04764 -12.04105 -11.96498 -11.52852 -11.47046 -11.00194 -10.93994 -10.86906 -10.80038 -10.65884 -10.36204 -9.94910 -9.00409 -7.84022 -5.30780 -0.60249 0.17410 0.55370 0.74370 1.46510 1.47684 1.58257 1.96429 2.15347 2.33909 2.45976 3.02812 3.20357 3.27856 3.55208 3.59383 3.78825 3.97707 4.02707 4.05455 4.08275 4.14607 4.22842 4.37044 4.52591 4.54125 4.59448 4.63572 4.74675 4.78084 4.85675 4.87955 4.92800 5.22249 5.32346 5.34984 5.41596 5.64612 6.02754 6.17347 6.18458 6.48701 6.83317 6.99432 7.02914 7.65623 8.28362 9.18109 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002485 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.914351 B =11262.692509 C =11686.557638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.162 3.838 4 H 0.095 0.905 5 C -0.166 4.166 6 C 0.003 3.997 7 N -0.453 5.453 8 C -0.012 4.012 9 C 0.591 3.409 10 O -0.570 6.570 11 N -0.687 5.687 12 C 0.154 3.846 13 H 0.083 0.917 14 C 0.133 3.867 15 N -0.618 5.618 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.061 4.061 19 N -0.946 5.946 20 Si 0.985 3.015 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.136 3.864 25 C 0.092 3.908 26 H 0.084 0.916 27 O -0.566 6.566 28 C -0.237 4.237 29 S 0.329 5.671 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.417 0.583 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.251 0.749 40 H 0.093 0.907 41 H -0.005 1.005 42 H 0.398 0.602 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -14.913 -23.735 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.101 3.899 4 H 0.113 0.887 5 C -0.224 4.224 6 C -0.276 4.276 7 N -0.171 5.171 8 C -0.147 4.147 9 C 0.376 3.624 10 O -0.450 6.450 11 N -0.337 5.337 12 C 0.048 3.952 13 H 0.101 0.899 14 C 0.006 3.994 15 N -0.346 5.346 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.813 3.187 21 H -0.194 1.194 22 H -0.218 1.218 23 H -0.212 1.212 24 C 0.010 3.990 25 C 0.031 3.969 26 H 0.102 0.898 27 O -0.374 6.374 28 C -0.380 4.380 29 S 0.587 5.413 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.254 0.746 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.013 0.987 42 H 0.248 0.752 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.652 -16.089 -23.836 29.759 hybrid contribution -0.250 1.751 2.071 2.723 sum -7.902 -14.338 -21.765 27.235 Atomic orbital electron populations 1.23053 0.78263 1.04401 1.01308 1.87855 1.22285 1.26236 1.95260 1.20413 0.87228 0.86413 0.95833 0.88674 1.22290 1.04530 1.02301 0.93262 1.27251 1.03461 0.96955 0.99921 1.66780 1.12486 1.28464 1.09338 1.20036 0.92537 0.98694 1.03452 1.17473 0.84252 0.80363 0.80310 1.90793 1.20755 1.73614 1.59797 1.45622 1.21302 1.25226 1.41551 1.21664 0.98227 0.88359 0.86980 0.89937 1.21641 0.97730 0.90298 0.89731 1.44538 1.81133 1.01269 1.07650 1.19479 1.39102 0.93461 0.85296 0.90173 1.25649 1.02059 0.94774 1.02871 1.69955 1.56462 0.96992 1.36089 0.84915 0.77149 0.77714 0.78919 1.19400 1.21834 1.21162 1.22446 0.99005 0.91002 0.86539 1.23318 0.95190 0.89006 0.89364 0.89829 1.86385 1.61268 1.28702 1.61048 1.27042 1.08017 0.99423 1.03525 1.82584 1.02906 1.23741 1.32044 0.87897 0.93596 0.91847 0.90899 0.90924 0.89101 0.74591 0.94592 0.96297 0.93887 0.88937 0.98707 0.75163 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -5.57 10.17 -148.98 -1.52 -7.08 16 3 C 0.16 2.32 3.23 29.85 0.10 2.42 16 4 H 0.10 1.33 7.79 -2.39 -0.02 1.32 16 5 C -0.17 -1.62 9.51 71.98 0.68 -0.94 16 6 C 0.00 0.06 6.30 88.58 0.56 0.62 16 7 N -0.45 -11.54 10.12 -180.84 -1.83 -13.37 16 8 C -0.01 -0.33 6.70 40.56 0.27 -0.06 16 9 C 0.59 21.07 7.80 86.62 0.68 21.74 16 10 O -0.57 -23.85 16.40 -4.14 -0.07 -23.92 16 11 N -0.69 -23.90 5.11 -440.30 -2.25 -26.15 16 12 C 0.15 6.25 3.00 46.18 0.14 6.39 16 13 H 0.08 3.71 7.62 -2.39 -0.02 3.70 16 14 C 0.13 6.17 6.99 86.73 0.61 6.78 16 15 N -0.62 -33.12 3.40 -691.01 -2.35 -35.46 16 16 C -0.24 -14.03 10.27 84.03 0.86 -13.16 16 17 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 18 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 19 N -0.95 -55.31 10.09 21.65 0.22 -55.09 16 20 Si 0.99 45.60 29.55 68.60 2.03 47.63 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.14 6.77 5.65 87.02 0.49 7.26 16 25 C 0.09 3.58 4.07 32.16 0.13 3.71 16 26 H 0.08 2.95 8.01 -2.39 -0.02 2.93 16 27 O -0.57 -19.63 13.48 -148.98 -2.01 -21.64 16 28 C -0.24 -5.38 10.62 67.12 0.71 -4.67 16 29 S 0.33 5.22 22.73 -56.49 -1.28 3.93 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.56 7.87 -2.39 -0.02 0.54 16 36 H 0.42 12.82 8.06 -92.71 -0.75 12.07 16 37 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.09 5.00 5.87 -2.39 -0.01 4.99 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.40 10.16 9.12 -74.05 -0.68 9.48 16 43 H 0.20 4.09 8.03 -2.92 -0.02 4.07 16 Total: -1.00 -74.54 376.02 -2.50 -77.04 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.36 Total: 25.56 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 6.92 Total: 28.55 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -6.21 Total: -130.08 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -3.59 Total: -52.64 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.28 Total: 3.93 kcal Total: -74.54 -2.50 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.119 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds