Wall clock time and date at job start Tue Mar 31 2020 22:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00075 * 2 1 4 4 H 1.09002 * 109.46971 * 330.00057 * 3 2 1 5 5 C 1.53007 * 109.47280 * 89.99577 * 3 2 1 6 6 C 1.50697 * 109.47233 * 210.00123 * 3 2 1 7 7 N 1.29433 * 124.79996 * 315.01964 * 6 3 2 8 8 C 1.30945 * 117.36115 * 179.97438 * 7 6 3 9 9 C 1.35665 * 114.19172 * 359.97438 * 8 7 6 10 10 C 1.46686 * 126.13064 * 180.02562 * 9 8 7 11 11 O 1.21683 * 119.99821 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99719 * 0.02671 * 10 9 8 13 13 C 1.46496 * 119.99681 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.92089 * 31.10246 * 13 12 10 15 15 C 1.54915 * 111.00547 * 267.19663 * 13 12 10 16 16 N 1.47425 * 104.83334 * 204.91767 * 15 13 12 17 17 C 1.36938 * 125.64998 * 204.16451 * 16 15 13 18 18 H 1.07994 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00073 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47265 * 59.99929 * 21 19 17 23 23 H 1.48507 * 109.47363 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47157 * 300.00028 * 21 19 17 25 25 C 1.47022 * 108.70334 * 24.12789 * 16 15 13 26 26 C 1.54327 * 107.27336 * 358.94217 * 25 16 15 27 27 H 1.08993 * 110.72079 * 96.16743 * 26 25 16 28 28 O 1.42893 * 110.72400 * 219.44644 * 26 25 16 29 29 S 1.70955 * 124.80731 * 135.29881 * 6 3 2 30 30 H 1.08999 * 109.47219 * 60.00571 * 1 2 3 31 31 H 1.08999 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47710 * 300.00209 * 1 2 3 33 33 H 1.08999 * 109.46706 * 300.00228 * 5 3 2 34 34 H 1.08993 * 109.46622 * 60.00197 * 5 3 2 35 35 H 1.08993 * 109.46656 * 180.02562 * 5 3 2 36 36 H 1.07996 * 122.90475 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00096 * 0.02562 * 12 10 9 38 38 H 1.08997 * 110.36462 * 86.07761 * 15 13 12 39 39 H 1.08997 * 110.36247 * 323.75428 * 15 13 12 40 40 H 0.96998 * 119.99944 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.88723 * 239.52626 * 25 16 15 42 42 H 1.09000 * 110.01436 * 118.43179 * 25 16 15 43 43 H 0.96707 * 113.99718 * 298.54499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2428 0.3550 -0.5333 8 6 5.3468 0.4606 -1.2296 9 6 5.3817 1.5354 -2.0568 10 6 6.4850 1.9034 -2.9506 11 8 6.3976 2.8969 -3.6477 12 7 7.5953 1.1411 -2.9997 13 6 8.6970 1.5084 -3.8928 14 1 8.7537 2.5898 -4.0165 15 6 8.5608 0.7991 -5.2633 16 7 9.9345 0.7382 -5.7949 17 6 10.2748 0.6390 -7.1176 18 1 9.5031 0.5983 -7.8721 19 6 11.6115 0.5906 -7.4887 20 7 12.5519 0.6407 -6.5692 21 14 12.0756 0.4559 -9.2930 22 1 11.5407 1.6286 -10.0307 23 1 13.5546 0.4228 -9.4227 24 1 11.5005 -0.7902 -9.8604 25 6 10.8787 0.8027 -4.6698 26 6 10.0444 0.9360 -3.3784 27 1 9.8967 -0.0381 -2.9124 28 8 10.6648 1.8452 -2.4671 29 16 3.8672 2.4143 -1.8592 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.2567 1.8015 1.9563 34 1 2.8828 1.0776 1.9563 35 1 2.6605 2.7673 1.4424 36 1 6.1589 -0.2471 -1.1527 37 1 7.6647 0.3489 -2.4442 38 1 7.9218 1.3794 -5.9289 39 1 8.1600 -0.2060 -5.1321 40 1 13.4860 0.6066 -6.8285 41 1 11.5299 1.6696 -4.7815 42 1 11.4770 -0.1077 -4.6322 43 1 11.5450 1.5705 -2.1756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076999518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:49 Heat of formation + Delta-G solvation = -46.618362 kcal Electronic energy + Delta-G solvation = -26836.937224 eV Core-core repulsion = 22817.614212 eV Total energy + Delta-G solvation = -4019.323012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.43279 -39.51033 -38.38065 -37.77661 -35.09996 -34.18960 -32.92542 -31.79419 -30.16273 -28.29161 -27.33785 -26.96706 -26.17953 -24.44225 -23.30985 -21.93099 -20.60090 -20.43457 -19.70203 -18.60154 -17.70961 -17.06534 -16.71893 -16.50417 -15.95464 -15.80374 -15.62060 -15.13326 -14.75364 -14.56247 -14.24554 -14.09236 -13.94478 -13.59545 -13.25080 -13.09034 -12.78178 -12.72535 -12.50131 -12.16702 -12.11169 -11.83391 -11.55670 -11.48518 -11.28119 -10.93628 -10.80762 -10.56284 -10.24078 -10.15985 -9.96119 -9.85597 -9.74156 -9.67528 -9.38810 -9.25918 -8.92010 -8.65917 -6.94612 -5.78533 -3.13235 -0.03202 0.81053 1.36690 2.24593 3.14286 3.20972 3.36542 3.39336 3.43247 3.44590 3.65262 4.26832 4.41378 4.56530 4.57692 4.63439 4.74432 4.85558 4.92943 4.97121 5.14101 5.15456 5.26062 5.28132 5.41163 5.55225 5.61062 5.66239 5.75882 5.76982 6.02891 6.06171 6.41223 6.56019 6.61643 6.80201 7.28826 7.36544 7.42445 7.51177 7.70443 8.08480 8.13631 8.19847 9.12603 9.72555 10.35138 11.33264 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.002156 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.370609 B =12984.510818 C =13424.480669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.083 0.917 5 C -0.168 4.168 6 C 0.027 3.973 7 N -0.450 5.450 8 C 0.088 3.912 9 C -0.281 4.281 10 C 0.593 3.407 11 O -0.531 6.531 12 N -0.699 5.699 13 C 0.139 3.861 14 H 0.109 0.891 15 C 0.130 3.870 16 N -0.599 5.599 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.153 3.847 26 C 0.068 3.932 27 H 0.059 0.941 28 O -0.563 6.563 29 S 0.240 5.760 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.183 0.817 37 H 0.398 0.602 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 0.420 17.296 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.248 4.248 7 N -0.164 5.164 8 C -0.070 4.070 9 C -0.406 4.406 10 C 0.377 3.623 11 O -0.409 6.409 12 N -0.350 5.350 13 C 0.034 3.966 14 H 0.127 0.873 15 C 0.002 3.998 16 N -0.327 5.327 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.077 0.923 28 O -0.368 6.368 29 S 0.498 5.502 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.200 0.800 37 H 0.233 0.767 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -21.702 1.813 16.509 27.327 hybrid contribution 1.490 -1.369 -0.519 2.089 sum -20.212 0.443 15.989 25.775 Atomic orbital electron populations 1.22898 0.80565 1.03389 1.00155 1.88097 1.19668 1.25554 1.94922 1.20470 0.87341 0.86393 0.95299 0.89951 1.22268 1.03371 1.02274 0.94798 1.27322 1.00400 0.96338 1.00758 1.66032 1.00734 1.25481 1.24109 1.22250 0.96141 0.96451 0.92196 1.25928 1.02249 1.03397 1.09023 1.16647 0.81132 0.83265 0.81255 1.90869 1.80392 1.26271 1.43331 1.45660 1.16594 1.28662 1.44040 1.22366 0.82981 1.01858 0.89435 0.87333 1.21857 0.89368 0.96881 0.91671 1.44229 0.98843 1.86993 1.02642 1.19040 0.91734 1.43765 0.81204 0.90154 1.24821 0.95536 1.01905 0.98105 1.69904 0.99400 1.56819 1.31053 0.86130 0.77200 0.78018 0.83996 1.21024 1.21549 1.21083 1.21846 0.90922 1.02114 0.82365 1.23466 0.93050 0.90824 0.91858 0.92335 1.86459 1.35458 1.50380 1.64551 1.84015 1.07560 1.25039 1.33549 0.93733 0.89077 0.93681 0.91149 0.90542 0.91066 0.79995 0.76719 0.93040 0.95700 0.93560 0.92048 0.93171 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.43 10.32 -35.23 -0.36 -3.80 16 3 C 0.17 1.34 3.23 -27.88 -0.09 1.25 16 4 H 0.08 0.46 7.78 -51.93 -0.40 0.05 16 5 C -0.17 -1.09 9.51 37.16 0.35 -0.74 16 6 C 0.03 0.28 6.28 -13.29 -0.08 0.20 16 7 N -0.45 -5.46 10.49 -11.50 -0.12 -5.58 16 8 C 0.09 1.01 10.93 -18.85 -0.21 0.81 16 9 C -0.28 -3.65 6.48 -37.09 -0.24 -3.89 16 10 C 0.59 9.46 7.79 -12.85 -0.10 9.36 16 11 O -0.53 -10.44 16.60 5.20 0.09 -10.35 16 12 N -0.70 -10.48 5.18 -53.03 -0.27 -10.75 16 13 C 0.14 2.59 3.15 -65.78 -0.21 2.38 16 14 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 15 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 16 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.60 10.31 55.49 0.57 -26.02 16 21 Si 0.92 22.03 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 3.58 5.14 -3.06 -0.02 3.56 16 26 C 0.07 1.23 3.98 -24.89 -0.10 1.14 16 27 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 28 O -0.56 -9.60 13.39 -35.23 -0.47 -10.07 16 29 S 0.24 2.60 23.01 -107.50 -2.47 0.12 16 30 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 33 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.18 1.59 7.15 -52.49 -0.38 1.22 16 37 H 0.40 4.67 7.28 -40.82 -0.30 4.37 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.06 1.62 7.29 -51.93 -0.38 1.24 16 42 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 43 H 0.38 4.92 9.11 45.56 0.42 5.33 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -35.19 375.90 -7.98 -43.16 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.13 Total: 5.22 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 0.14 Total: 11.20 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.40 Total: -58.15 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.75 Total: -24.22 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.47 Total: 0.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.19 -7.98 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.454 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds