Wall clock time and date at job start Tue Mar 31 2020 22:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00075 * 2 1 4 4 H 1.09002 * 109.46971 * 330.00057 * 3 2 1 5 5 C 1.53007 * 109.47280 * 89.99577 * 3 2 1 6 6 C 1.50697 * 109.47233 * 210.00123 * 3 2 1 7 7 N 1.29433 * 124.79996 * 315.01964 * 6 3 2 8 8 C 1.30945 * 117.36115 * 179.97438 * 7 6 3 9 9 C 1.35665 * 114.19172 * 359.97438 * 8 7 6 10 10 C 1.46686 * 126.13064 * 180.02562 * 9 8 7 11 11 O 1.21683 * 119.99821 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99719 * 0.02671 * 10 9 8 13 13 C 1.46496 * 119.99681 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.92089 * 31.10246 * 13 12 10 15 15 C 1.54915 * 111.00547 * 267.19663 * 13 12 10 16 16 N 1.47425 * 104.83334 * 204.91767 * 15 13 12 17 17 C 1.36938 * 125.64998 * 204.16451 * 16 15 13 18 18 H 1.07994 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00073 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47265 * 59.99929 * 21 19 17 23 23 H 1.48507 * 109.47363 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47157 * 300.00028 * 21 19 17 25 25 C 1.47022 * 108.70334 * 24.12789 * 16 15 13 26 26 C 1.54327 * 107.27336 * 358.94217 * 25 16 15 27 27 H 1.08993 * 110.72079 * 96.16743 * 26 25 16 28 28 O 1.42893 * 110.72400 * 219.44644 * 26 25 16 29 29 S 1.70955 * 124.80731 * 135.29881 * 6 3 2 30 30 H 1.08999 * 109.47219 * 60.00571 * 1 2 3 31 31 H 1.08999 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47710 * 300.00209 * 1 2 3 33 33 H 1.08999 * 109.46706 * 300.00228 * 5 3 2 34 34 H 1.08993 * 109.46622 * 60.00197 * 5 3 2 35 35 H 1.08993 * 109.46656 * 180.02562 * 5 3 2 36 36 H 1.07996 * 122.90475 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00096 * 0.02562 * 12 10 9 38 38 H 1.08997 * 110.36462 * 86.07761 * 15 13 12 39 39 H 1.08997 * 110.36247 * 323.75428 * 15 13 12 40 40 H 0.96998 * 119.99944 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.88723 * 239.52626 * 25 16 15 42 42 H 1.09000 * 110.01436 * 118.43179 * 25 16 15 43 43 H 0.96707 * 113.99718 * 298.54499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2428 0.3550 -0.5333 8 6 5.3468 0.4606 -1.2296 9 6 5.3817 1.5354 -2.0568 10 6 6.4850 1.9034 -2.9506 11 8 6.3976 2.8969 -3.6477 12 7 7.5953 1.1411 -2.9997 13 6 8.6970 1.5084 -3.8928 14 1 8.7537 2.5898 -4.0165 15 6 8.5608 0.7991 -5.2633 16 7 9.9345 0.7382 -5.7949 17 6 10.2748 0.6390 -7.1176 18 1 9.5031 0.5983 -7.8721 19 6 11.6115 0.5906 -7.4887 20 7 12.5519 0.6407 -6.5692 21 14 12.0756 0.4559 -9.2930 22 1 11.5407 1.6286 -10.0307 23 1 13.5546 0.4228 -9.4227 24 1 11.5005 -0.7902 -9.8604 25 6 10.8787 0.8027 -4.6698 26 6 10.0444 0.9360 -3.3784 27 1 9.8967 -0.0381 -2.9124 28 8 10.6648 1.8452 -2.4671 29 16 3.8672 2.4143 -1.8592 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.2567 1.8015 1.9563 34 1 2.8828 1.0776 1.9563 35 1 2.6605 2.7673 1.4424 36 1 6.1589 -0.2471 -1.1527 37 1 7.6647 0.3489 -2.4442 38 1 7.9218 1.3794 -5.9289 39 1 8.1600 -0.2060 -5.1321 40 1 13.4860 0.6066 -6.8285 41 1 11.5299 1.6696 -4.7815 42 1 11.4770 -0.1077 -4.6322 43 1 11.5450 1.5705 -2.1756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076999518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:49 Heat of formation + Delta-G solvation = -75.936169 kcal Electronic energy + Delta-G solvation = -26838.208539 eV Core-core repulsion = 22817.614212 eV Total energy + Delta-G solvation = -4020.594327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47873 -40.66183 -39.42817 -38.91666 -36.68619 -35.70468 -33.91285 -33.36416 -31.26117 -29.94376 -28.68489 -27.74783 -27.01597 -26.26670 -24.11617 -23.06334 -22.30772 -21.95610 -20.77586 -19.54260 -19.02501 -18.61790 -18.09574 -17.40661 -17.16560 -16.73031 -16.47633 -16.39705 -16.13937 -15.84169 -15.66166 -15.27193 -15.14089 -14.72364 -14.48965 -14.26524 -14.14394 -13.80782 -13.59481 -13.28237 -13.18986 -13.15622 -12.81592 -12.72124 -12.68774 -12.60730 -12.14556 -11.99045 -11.90042 -11.69770 -11.55752 -11.00786 -10.88127 -10.77554 -10.68073 -10.53294 -10.31858 -10.04234 -8.98488 -7.89722 -5.26956 -0.93779 -0.05373 0.50532 1.29196 1.45620 1.49011 1.54993 1.95902 2.02102 2.47224 2.77205 2.96252 3.09746 3.30955 3.51090 3.57173 3.69683 3.85283 4.01854 4.03918 4.04772 4.06942 4.18471 4.42828 4.49808 4.50267 4.58663 4.68445 4.79053 4.80487 4.89842 4.91344 4.93059 5.23936 5.31273 5.36993 5.43219 5.65095 6.10922 6.12247 6.30526 6.52940 6.84710 6.98530 7.04011 7.67833 8.29946 9.19833 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.002156 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.370609 B =12984.510818 C =13424.480669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.159 3.841 4 H 0.109 0.891 5 C -0.164 4.164 6 C 0.040 3.960 7 N -0.476 5.476 8 C 0.108 3.892 9 C -0.315 4.315 10 C 0.596 3.404 11 O -0.576 6.576 12 N -0.686 5.686 13 C 0.154 3.846 14 H 0.078 0.922 15 C 0.130 3.870 16 N -0.621 5.621 17 C -0.248 4.248 18 H 0.081 0.919 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.161 3.839 26 C 0.091 3.909 27 H 0.097 0.903 28 O -0.569 6.569 29 S 0.255 5.745 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.208 0.792 37 H 0.417 0.583 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.250 0.750 41 H 0.022 0.978 42 H 0.029 0.971 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.725 -0.309 18.725 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.098 3.902 4 H 0.127 0.873 5 C -0.223 4.223 6 C -0.234 4.234 7 N -0.190 5.190 8 C -0.052 4.052 9 C -0.440 4.440 10 C 0.383 3.617 11 O -0.457 6.457 12 N -0.337 5.337 13 C 0.047 3.953 14 H 0.096 0.904 15 C 0.004 3.996 16 N -0.349 5.349 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.200 1.200 25 C 0.035 3.965 26 C 0.031 3.969 27 H 0.115 0.885 28 O -0.377 6.377 29 S 0.515 5.485 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.224 0.776 37 H 0.256 0.744 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -23.640 1.061 17.981 29.720 hybrid contribution 1.955 -1.139 -0.890 2.432 sum -21.685 -0.078 17.090 27.611 Atomic orbital electron populations 1.23099 0.78729 1.04220 1.01550 1.88049 1.21763 1.26314 1.95135 1.20786 0.86510 0.86750 0.96188 0.87298 1.22259 1.04258 1.02111 0.93693 1.27946 1.00909 0.95181 0.99380 1.66152 1.01359 1.26454 1.25061 1.22634 0.96350 0.95746 0.90450 1.25603 1.02606 1.05333 1.10441 1.16963 0.81527 0.82389 0.80817 1.90846 1.81289 1.28242 1.45330 1.45368 1.15495 1.29340 1.43507 1.21834 0.84641 0.99733 0.89059 0.90426 1.21942 0.87287 0.97759 0.92652 1.44497 1.00907 1.86944 1.02580 1.19391 0.92101 1.43515 0.82695 0.90098 1.25656 0.95543 1.02096 1.02197 1.70108 0.99253 1.57587 1.32642 0.85121 0.76532 0.78225 0.79237 1.20658 1.21700 1.20023 1.21651 0.91030 0.99243 0.84568 1.23174 0.91351 0.92598 0.89805 0.88537 1.86426 1.36935 1.50589 1.63702 1.83947 1.06499 1.24776 1.33301 0.92698 0.88656 0.91885 0.89011 0.92344 0.90150 0.77600 0.74439 0.94614 0.93747 0.94087 0.95958 0.95333 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.39 -6.59 10.32 -148.98 -1.54 -8.12 16 3 C 0.16 2.16 3.23 29.85 0.10 2.26 16 4 H 0.11 0.87 7.78 -2.39 -0.02 0.85 16 5 C -0.16 -1.72 9.51 71.98 0.68 -1.04 16 6 C 0.04 0.77 6.28 88.46 0.56 1.33 16 7 N -0.48 -10.65 10.49 -190.30 -2.00 -12.65 16 8 C 0.11 2.25 10.93 84.23 0.92 3.17 16 9 C -0.32 -7.79 6.48 23.88 0.15 -7.63 16 10 C 0.60 18.71 7.79 86.45 0.67 19.38 16 11 O -0.58 -23.03 16.60 -4.29 -0.07 -23.10 16 12 N -0.69 -19.63 5.18 -439.90 -2.28 -21.90 16 13 C 0.15 5.71 3.15 46.39 0.15 5.85 16 14 H 0.08 3.42 7.54 -2.39 -0.02 3.40 16 15 C 0.13 5.54 6.93 86.86 0.60 6.15 16 16 N -0.62 -32.16 3.39 -691.99 -2.35 -34.51 16 17 C -0.25 -14.08 10.28 84.03 0.86 -13.21 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 19 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 20 N -0.95 -55.89 10.31 21.65 0.22 -55.67 16 21 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.16 7.66 5.14 86.73 0.45 8.11 16 26 C 0.09 3.20 3.98 31.79 0.13 3.32 16 27 H 0.10 2.73 8.00 -2.39 -0.02 2.71 16 28 O -0.57 -18.65 13.39 -148.98 -2.00 -20.64 16 29 S 0.26 5.19 23.01 -56.49 -1.30 3.89 16 30 H 0.05 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.30 7.87 -2.39 -0.02 0.28 16 33 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.21 2.99 7.15 -2.91 -0.02 2.97 16 37 H 0.42 8.66 7.28 -92.71 -0.67 7.98 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.02 1.22 7.29 -2.39 -0.02 1.20 16 42 H 0.03 1.46 7.51 -2.39 -0.02 1.45 16 43 H 0.40 9.72 9.11 -74.05 -0.67 9.04 16 Total: -1.00 -78.54 375.90 -2.60 -81.14 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.29 Total: 17.69 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 6.96 Total: 26.05 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -6.40 Total: -124.74 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -3.60 Total: -51.86 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.30 Total: 3.89 kcal Total: -78.54 -2.60 -81.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.202 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds