Wall clock time and date at job start Tue Mar 31 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 N 1.29427 * 124.80440 * 44.70004 * 6 3 2 8 8 C 1.30948 * 117.36460 * 179.76360 * 7 6 3 9 9 C 1.35661 * 114.18629 * 0.51654 * 8 7 6 10 10 C 1.46691 * 126.12648 * 179.74760 * 9 8 7 11 11 O 1.21683 * 119.99411 * 179.97438 * 10 9 8 12 12 N 1.34769 * 119.99930 * 359.97438 * 10 9 8 13 13 C 1.46500 * 119.99856 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.64368 * 36.68650 * 13 12 10 15 15 C 1.54326 * 110.72118 * 273.54601 * 13 12 10 16 16 N 1.47022 * 107.27276 * 219.44553 * 15 13 12 17 17 C 1.36939 * 125.64729 * 178.90660 * 16 15 13 18 18 H 1.07996 * 120.00446 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00000 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47188 * 120.00063 * 21 19 17 24 24 H 1.48501 * 109.47222 * 239.99894 * 21 19 17 25 25 C 1.47426 * 108.70141 * 358.93623 * 16 15 13 26 26 C 1.54910 * 104.83232 * 24.13416 * 25 16 15 27 27 H 1.08994 * 111.00540 * 81.05838 * 26 25 16 28 28 O 1.42898 * 111.00295 * 204.91255 * 26 25 16 29 29 S 1.70948 * 124.80480 * 224.99798 * 6 3 2 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 34 34 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 36 36 H 1.07999 * 122.90747 * 180.25238 * 8 7 6 37 37 H 0.96999 * 120.00581 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.88021 * 338.85861 * 15 13 12 39 39 H 1.09001 * 109.88704 * 99.87133 * 15 13 12 40 40 H 0.96996 * 119.99840 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.36096 * 142.97046 * 25 16 15 42 42 H 1.08997 * 110.36719 * 265.29128 * 25 16 15 43 43 H 0.96699 * 114.00226 * 292.19573 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 4.2408 0.3522 0.5372 8 6 5.3472 0.4612 1.2290 9 6 5.3823 1.5362 2.0557 10 6 6.4863 1.9051 2.9484 11 8 6.3990 2.8988 3.6452 12 7 7.5970 1.1434 2.9968 13 6 8.6998 1.5121 3.8879 14 1 8.3178 1.9277 4.8204 15 6 9.6516 2.5098 3.1950 16 7 11.0232 2.1385 3.5721 17 6 12.1648 2.7647 3.1480 18 1 12.1005 3.6088 2.4775 19 6 13.4048 2.3144 3.5801 20 7 13.4832 1.2860 4.3977 21 14 14.9621 3.1682 3.0010 22 1 14.6045 4.2886 2.0944 23 1 15.7015 3.6985 4.1747 24 1 15.8183 2.1966 2.2743 25 6 10.9661 0.9798 4.4819 26 6 9.6163 0.2904 4.1617 27 1 9.7002 -0.3410 3.2772 28 8 9.1466 -0.4614 5.2825 29 16 3.8642 2.4102 1.8645 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2568 1.8015 -1.9562 34 1 2.6605 2.7675 -1.4424 35 1 2.8829 1.0776 -1.9564 36 1 6.1597 -0.2461 1.1514 37 1 7.6667 0.3514 2.4410 38 1 9.5339 2.4441 2.1133 39 1 9.4341 3.5238 3.5304 40 1 14.3497 0.9712 4.6992 41 1 11.7953 0.3007 4.2837 42 1 10.9859 1.3113 5.5200 43 1 9.6877 -1.2349 5.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076999519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:54 Heat of formation + Delta-G solvation = -45.354471 kcal Electronic energy + Delta-G solvation = -26868.155647 eV Core-core repulsion = 22848.887442 eV Total energy + Delta-G solvation = -4019.268205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43322 -39.52073 -38.37592 -37.74499 -35.12369 -34.19277 -32.92388 -31.81810 -30.16130 -28.31662 -27.32888 -26.94137 -26.17501 -24.48053 -23.30309 -21.92695 -20.73386 -20.26479 -19.61827 -18.59317 -17.70799 -17.07518 -16.86715 -16.52905 -15.96381 -15.76790 -15.54232 -15.14614 -14.87314 -14.57276 -14.25047 -14.00199 -13.83347 -13.57337 -13.35066 -13.11035 -12.92580 -12.75076 -12.36943 -12.16329 -12.00483 -11.81680 -11.54965 -11.48027 -11.32988 -11.03089 -10.87631 -10.56611 -10.22770 -10.16152 -9.96648 -9.78581 -9.71715 -9.68716 -9.34721 -9.25148 -8.88739 -8.75476 -6.95732 -5.75539 -3.17949 -0.02668 0.81406 1.36989 2.25235 3.14608 3.21501 3.35597 3.37121 3.41801 3.44165 3.65843 4.27208 4.36079 4.55851 4.57702 4.63607 4.75062 4.85701 4.92717 4.97655 5.16208 5.20411 5.26255 5.28940 5.38327 5.56133 5.60153 5.67591 5.77143 5.80498 6.02649 6.12624 6.36173 6.61739 6.62393 6.82393 7.27661 7.37222 7.46135 7.53662 7.68614 8.05452 8.16973 8.23150 9.10664 9.70953 10.32886 11.28960 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.002197 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.430411 B =12742.557927 C =13178.238848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.083 0.917 5 C -0.168 4.168 6 C 0.027 3.973 7 N -0.449 5.449 8 C 0.089 3.911 9 C -0.281 4.281 10 C 0.593 3.407 11 O -0.532 6.532 12 N -0.700 5.700 13 C 0.143 3.857 14 H 0.103 0.897 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.918 3.082 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.130 3.870 26 C 0.068 3.932 27 H 0.063 0.937 28 O -0.565 6.565 29 S 0.239 5.761 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.183 0.817 37 H 0.399 0.601 38 H 0.031 0.969 39 H 0.036 0.964 40 H 0.253 0.747 41 H 0.114 0.886 42 H 0.027 0.973 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.541 -3.407 -8.757 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.248 4.248 7 N -0.163 5.163 8 C -0.070 4.070 9 C -0.406 4.406 10 C 0.377 3.623 11 O -0.410 6.410 12 N -0.350 5.350 13 C 0.039 3.961 14 H 0.121 0.879 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.099 0.901 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.749 3.251 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.004 3.996 26 C 0.007 3.993 27 H 0.081 0.919 28 O -0.370 6.370 29 S 0.497 5.503 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.200 0.800 37 H 0.234 0.766 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.045 0.955 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -25.326 -1.881 -8.149 26.671 hybrid contribution 1.866 -0.861 -0.591 2.139 sum -23.460 -2.742 -8.740 25.185 Atomic orbital electron populations 1.22896 0.80586 1.03368 1.00151 1.88099 1.19651 1.25575 1.94926 1.20471 0.87322 0.86362 0.95328 0.89963 1.22270 1.03376 1.02318 0.94764 1.27324 1.00457 0.96271 1.00736 1.66030 1.00751 1.25432 1.24119 1.22259 0.96062 0.96380 0.92279 1.25925 1.02150 1.03482 1.09064 1.16661 0.81017 0.83313 0.81331 1.90861 1.80831 1.26068 1.43245 1.45744 1.16303 1.28686 1.44254 1.22100 0.85203 0.95557 0.93248 0.87916 1.21626 0.85330 0.95881 0.96888 1.44297 0.99712 1.34405 1.54360 1.19152 0.82839 1.10160 1.22826 0.90112 1.24811 0.97730 0.98637 0.99494 1.69737 1.23100 1.27155 1.37283 0.85940 0.82871 0.78497 0.77836 1.20436 1.21648 1.21665 1.22560 0.93159 0.90635 0.93256 1.23641 0.96041 0.91412 0.88204 0.91890 1.86410 1.55912 1.43956 1.50756 1.83995 1.07421 1.25582 1.33254 0.93755 0.93672 0.89090 0.91151 0.91034 0.90521 0.79980 0.76601 0.95114 0.94652 0.93607 0.86853 0.95528 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.45 10.31 -35.23 -0.36 -3.81 16 3 C 0.17 1.36 3.23 -27.88 -0.09 1.27 16 4 H 0.08 0.46 7.78 -51.93 -0.40 0.06 16 5 C -0.17 -1.13 9.51 37.16 0.35 -0.78 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.21 16 7 N -0.45 -5.56 10.49 -11.50 -0.12 -5.68 16 8 C 0.09 1.04 10.93 -18.85 -0.21 0.84 16 9 C -0.28 -3.70 6.48 -37.09 -0.24 -3.94 16 10 C 0.59 9.53 7.78 -12.85 -0.10 9.43 16 11 O -0.53 -10.40 16.69 5.20 0.09 -10.31 16 12 N -0.70 -10.69 5.11 -53.33 -0.27 -10.96 16 13 C 0.14 2.68 2.97 -66.09 -0.20 2.49 16 14 H 0.10 2.13 7.69 -51.93 -0.40 1.73 16 15 C 0.13 2.80 6.99 -3.06 -0.02 2.78 16 16 N -0.60 -15.18 3.39 -170.07 -0.58 -15.75 16 17 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.14 10.09 55.49 0.56 -25.58 16 21 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 C 0.13 3.04 5.62 -2.53 -0.01 3.02 16 26 C 0.07 1.24 4.04 -24.58 -0.10 1.14 16 27 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 28 O -0.57 -9.48 13.47 -35.23 -0.47 -9.95 16 29 S 0.24 2.61 23.01 -107.50 -2.47 0.14 16 30 H 0.04 0.19 8.08 -51.93 -0.42 -0.22 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.18 1.67 7.15 -52.49 -0.38 1.30 16 37 H 0.40 4.91 7.23 -40.82 -0.30 4.61 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.38 4.78 9.12 45.56 0.42 5.20 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.57 375.41 -7.95 -42.52 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.09 Total: 5.99 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 0.14 Total: 11.02 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.41 Total: -57.98 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.75 Total: -24.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.47 Total: 0.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.57 -7.95 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.838 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds