Wall clock time and date at job start Tue Mar 31 2020 22:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 N 1.29427 * 124.80440 * 44.70004 * 6 3 2 8 8 C 1.30948 * 117.36460 * 179.76360 * 7 6 3 9 9 C 1.35661 * 114.18629 * 0.51654 * 8 7 6 10 10 C 1.46691 * 126.12648 * 179.74760 * 9 8 7 11 11 O 1.21683 * 119.99411 * 179.97438 * 10 9 8 12 12 N 1.34769 * 119.99930 * 359.97438 * 10 9 8 13 13 C 1.46500 * 119.99856 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.64368 * 36.68650 * 13 12 10 15 15 C 1.54326 * 110.72118 * 273.54601 * 13 12 10 16 16 N 1.47022 * 107.27276 * 219.44553 * 15 13 12 17 17 C 1.36939 * 125.64729 * 178.90660 * 16 15 13 18 18 H 1.07996 * 120.00446 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00000 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47188 * 120.00063 * 21 19 17 24 24 H 1.48501 * 109.47222 * 239.99894 * 21 19 17 25 25 C 1.47426 * 108.70141 * 358.93623 * 16 15 13 26 26 C 1.54910 * 104.83232 * 24.13416 * 25 16 15 27 27 H 1.08994 * 111.00540 * 81.05838 * 26 25 16 28 28 O 1.42898 * 111.00295 * 204.91255 * 26 25 16 29 29 S 1.70948 * 124.80480 * 224.99798 * 6 3 2 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 34 34 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 36 36 H 1.07999 * 122.90747 * 180.25238 * 8 7 6 37 37 H 0.96999 * 120.00581 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.88021 * 338.85861 * 15 13 12 39 39 H 1.09001 * 109.88704 * 99.87133 * 15 13 12 40 40 H 0.96996 * 119.99840 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.36096 * 142.97046 * 25 16 15 42 42 H 1.08997 * 110.36719 * 265.29128 * 25 16 15 43 43 H 0.96699 * 114.00226 * 292.19573 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 4.2408 0.3522 0.5372 8 6 5.3472 0.4612 1.2290 9 6 5.3823 1.5362 2.0557 10 6 6.4863 1.9051 2.9484 11 8 6.3990 2.8988 3.6452 12 7 7.5970 1.1434 2.9968 13 6 8.6998 1.5121 3.8879 14 1 8.3178 1.9277 4.8204 15 6 9.6516 2.5098 3.1950 16 7 11.0232 2.1385 3.5721 17 6 12.1648 2.7647 3.1480 18 1 12.1005 3.6088 2.4775 19 6 13.4048 2.3144 3.5801 20 7 13.4832 1.2860 4.3977 21 14 14.9621 3.1682 3.0010 22 1 14.6045 4.2886 2.0944 23 1 15.7015 3.6985 4.1747 24 1 15.8183 2.1966 2.2743 25 6 10.9661 0.9798 4.4819 26 6 9.6163 0.2904 4.1617 27 1 9.7002 -0.3410 3.2772 28 8 9.1466 -0.4614 5.2825 29 16 3.8642 2.4102 1.8645 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2568 1.8015 -1.9562 34 1 2.6605 2.7675 -1.4424 35 1 2.8829 1.0776 -1.9564 36 1 6.1597 -0.2461 1.1514 37 1 7.6667 0.3514 2.4410 38 1 9.5339 2.4441 2.1133 39 1 9.4341 3.5238 3.5304 40 1 14.3497 0.9712 4.6992 41 1 11.7953 0.3007 4.2837 42 1 10.9859 1.3113 5.5200 43 1 9.6877 -1.2349 5.4919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076999519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:53 Heat of formation + Delta-G solvation = -73.856923 kcal Electronic energy + Delta-G solvation = -26869.391606 eV Core-core repulsion = 22848.887442 eV Total energy + Delta-G solvation = -4020.504164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49790 -40.67714 -39.40623 -38.91770 -36.70549 -35.71297 -33.92677 -33.36687 -31.27336 -29.96244 -28.66853 -27.75199 -27.02583 -26.28845 -24.12544 -23.07156 -22.41146 -21.79061 -20.74362 -19.54033 -19.04350 -18.63884 -18.26402 -17.35272 -17.18931 -16.69391 -16.52550 -16.45532 -16.17047 -15.75189 -15.57760 -15.28757 -15.04133 -14.92125 -14.68288 -14.15345 -14.03753 -13.78672 -13.59049 -13.27179 -13.22963 -13.17278 -12.84252 -12.76716 -12.72591 -12.61429 -12.04158 -11.99439 -11.95305 -11.71993 -11.45712 -11.02916 -10.87878 -10.78771 -10.69348 -10.54135 -10.34033 -10.05306 -8.98835 -7.83432 -5.29538 -0.94649 -0.06170 0.49374 1.28210 1.47090 1.48161 1.58455 1.96053 2.00908 2.45926 2.76484 2.95526 3.04844 3.28464 3.53306 3.60100 3.68918 3.83041 4.00706 4.03123 4.04124 4.07354 4.18218 4.39941 4.49752 4.56038 4.58576 4.67692 4.79159 4.80615 4.86099 4.89353 4.92506 5.23398 5.31261 5.36987 5.43447 5.66815 6.10561 6.19944 6.28589 6.52240 6.85675 6.96184 7.04016 7.67339 8.29270 9.18641 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.002197 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.430411 B =12742.557927 C =13178.238848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.160 3.840 4 H 0.110 0.890 5 C -0.165 4.165 6 C 0.040 3.960 7 N -0.476 5.476 8 C 0.107 3.893 9 C -0.316 4.316 10 C 0.596 3.404 11 O -0.574 6.574 12 N -0.688 5.688 13 C 0.158 3.842 14 H 0.081 0.919 15 C 0.131 3.869 16 N -0.619 5.619 17 C -0.242 4.242 18 H 0.081 0.919 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.983 3.017 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.286 1.286 25 C 0.133 3.867 26 C 0.093 3.907 27 H 0.091 0.909 28 O -0.567 6.567 29 S 0.258 5.742 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.205 0.795 37 H 0.416 0.584 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.251 0.749 41 H 0.093 0.907 42 H -0.007 1.007 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.268 -3.973 -10.387 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.098 3.902 4 H 0.128 0.872 5 C -0.224 4.224 6 C -0.235 4.235 7 N -0.191 5.191 8 C -0.053 4.053 9 C -0.440 4.440 10 C 0.383 3.617 11 O -0.455 6.455 12 N -0.339 5.339 13 C 0.052 3.948 14 H 0.099 0.901 15 C 0.005 3.995 16 N -0.346 5.346 17 C -0.371 4.371 18 H 0.099 0.901 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.811 3.189 22 H -0.194 1.194 23 H -0.220 1.220 24 H -0.212 1.212 25 C 0.007 3.993 26 C 0.032 3.968 27 H 0.108 0.892 28 O -0.375 6.375 29 S 0.518 5.482 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.011 0.989 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -27.089 -2.480 -9.798 28.913 hybrid contribution 2.277 -0.695 -0.097 2.382 sum -24.812 -3.174 -9.894 26.900 Atomic orbital electron populations 1.23103 0.78707 1.04236 1.01564 1.88052 1.21788 1.26286 1.95133 1.20782 0.86491 0.86774 0.96132 0.87206 1.22262 1.04254 1.02094 0.93767 1.27957 1.00966 0.95130 0.99403 1.66146 1.01368 1.26457 1.25091 1.22616 0.96279 0.95726 0.90644 1.25617 1.02588 1.05403 1.10435 1.16964 0.81404 0.82443 0.80905 1.90838 1.81677 1.27904 1.45112 1.45479 1.15277 1.29282 1.43892 1.21621 0.85534 0.94969 0.92672 0.90095 1.21667 0.84462 0.95857 0.97547 1.44545 1.00581 1.35027 1.54486 1.19464 0.84031 1.10525 1.23031 0.90139 1.25633 1.00525 0.99481 0.99836 1.69953 1.23442 1.28110 1.38018 0.84942 0.78988 0.77722 0.77218 1.19364 1.22012 1.21232 1.22384 0.95610 0.90073 0.91195 1.23248 0.92632 0.91406 0.89532 0.89152 1.86384 1.56115 1.44785 1.50229 1.83906 1.06203 1.25199 1.32922 0.92630 0.91930 0.88626 0.88974 0.90190 0.92417 0.77803 0.74550 0.94093 0.96507 0.93947 0.88968 0.98915 0.75111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.39 -6.63 10.31 -148.98 -1.54 -8.17 16 3 C 0.16 2.21 3.23 29.85 0.10 2.31 16 4 H 0.11 0.88 7.78 -2.39 -0.02 0.86 16 5 C -0.16 -1.82 9.51 71.98 0.68 -1.14 16 6 C 0.04 0.78 6.28 88.46 0.56 1.34 16 7 N -0.48 -10.96 10.49 -190.30 -2.00 -12.95 16 8 C 0.11 2.32 10.93 84.23 0.92 3.24 16 9 C -0.32 -7.96 6.48 23.88 0.15 -7.80 16 10 C 0.60 18.89 7.78 86.45 0.67 19.56 16 11 O -0.57 -22.76 16.69 -4.30 -0.07 -22.83 16 12 N -0.69 -20.28 5.11 -440.87 -2.25 -22.54 16 13 C 0.16 5.90 2.97 46.18 0.14 6.03 16 14 H 0.08 3.42 7.69 -2.39 -0.02 3.40 16 15 C 0.13 5.75 6.99 86.73 0.61 6.35 16 16 N -0.62 -31.91 3.39 -691.98 -2.35 -34.26 16 17 C -0.24 -13.51 10.27 84.03 0.86 -12.64 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 20 N -0.95 -54.48 10.09 21.65 0.22 -54.26 16 21 Si 0.98 44.98 29.55 68.60 2.03 47.01 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 C 0.13 6.37 5.62 86.86 0.49 6.86 16 26 C 0.09 3.31 4.04 31.99 0.13 3.44 16 27 H 0.09 2.81 8.00 -2.39 -0.02 2.79 16 28 O -0.57 -18.22 13.47 -148.98 -2.01 -20.22 16 29 S 0.26 5.30 23.01 -56.49 -1.30 4.00 16 30 H 0.06 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.06 0.31 7.87 -2.39 -0.02 0.29 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.21 3.22 7.15 -2.91 -0.02 3.20 16 37 H 0.42 9.30 7.23 -92.71 -0.67 8.63 16 38 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.09 4.82 5.88 -2.39 -0.01 4.81 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.40 9.34 9.12 -74.06 -0.68 8.66 16 Total: -1.00 -76.27 375.41 -2.55 -78.82 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.28 Total: 19.44 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 7.00 Total: 25.97 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.38 Total: -124.01 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -3.62 Total: -51.22 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.30 Total: 4.00 kcal Total: -76.27 -2.55 -78.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076999519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.962 kcal (2) G-P(sol) polarization free energy of solvation -76.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds