Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.41385 * 128.00599 * 90.00370 * 10 9 7 12 12 N 1.30172 * 106.39317 * 179.97438 * 11 10 9 13 13 O 1.20925 * 111.60575 * 359.97438 * 12 11 10 14 14 C 1.34032 * 111.56819 * 359.76121 * 13 12 11 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47414 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00112 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00258 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00209 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47058 * 90.00181 * 24 22 20 26 26 H 1.48501 * 109.47242 * 210.00255 * 24 22 20 27 27 H 1.48494 * 109.47103 * 330.00191 * 24 22 20 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.07998 * 126.79921 * 359.93918 * 11 10 9 39 39 H 1.08001 * 126.78290 * 180.28804 * 14 13 12 40 40 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 41 41 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 42 42 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 43 43 H 0.96991 * 120.00114 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 7.3782 -1.9432 4.0694 11 6 8.1544 -0.9365 4.6883 12 7 9.3999 -1.2584 4.4891 13 8 9.4990 -2.2850 3.8577 14 6 8.2971 -2.7936 3.5524 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 16 2.7098 0.4348 -4.9733 20 6 3.3130 -0.6303 -6.2407 21 1 3.5224 -1.6667 -6.0208 22 6 3.5189 -0.1373 -7.5217 23 7 3.9691 -0.9330 -8.4688 24 14 3.1560 1.6552 -7.9023 25 1 4.3746 2.4689 -7.6614 26 1 2.7461 1.7863 -9.3236 27 1 2.0587 2.1352 -7.0245 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.7868 -0.0716 5.2203 39 1 8.1000 -3.7011 3.0010 40 1 2.2489 -1.6317 -1.1529 41 1 3.6491 -1.1200 -3.3981 42 1 1.9775 -1.5504 -3.8328 43 1 4.1134 -0.5884 -9.3639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077946064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = -22.059444 kcal Electronic energy + Delta-G solvation = -25809.460488 eV Core-core repulsion = 21791.202431 eV Total energy + Delta-G solvation = -4018.258057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.26498 -40.16600 -39.50704 -36.80849 -35.05438 -34.72179 -32.54621 -32.43359 -31.97602 -30.22163 -28.79957 -28.39431 -25.60945 -24.10232 -23.27591 -22.15318 -21.73413 -20.67813 -20.44311 -18.32616 -18.00957 -17.84644 -17.25564 -16.75939 -16.51523 -16.12137 -15.91828 -15.18971 -15.03949 -14.96607 -14.65090 -14.19114 -13.98227 -13.69112 -13.57361 -13.47394 -13.37686 -13.01777 -12.79036 -12.62958 -12.31426 -12.08562 -11.84713 -11.65710 -11.59640 -11.26087 -11.19383 -11.00024 -10.74154 -10.59811 -10.32545 -9.85312 -9.76698 -9.53114 -9.49850 -9.05640 -8.98344 -8.49878 -6.91231 -6.28318 -4.00031 1.14676 1.84488 2.23727 2.74875 2.76331 2.94707 2.95401 3.29277 3.34818 3.50906 3.64548 3.87897 4.23566 4.26729 4.33656 4.35072 4.41912 4.59787 4.62974 4.71256 4.75970 4.85229 5.10671 5.12435 5.16397 5.17625 5.24380 5.27050 5.30858 5.47880 5.54676 5.60560 5.67261 5.76065 5.88480 5.98486 6.00931 6.07367 6.52952 7.03678 7.57051 7.82235 7.90608 7.94784 8.42148 8.47124 9.17884 10.80935 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.002073 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.362611 B =13502.361138 C =15391.338330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.732 5.732 7 C 0.508 3.492 8 O -0.525 6.525 9 C -0.062 4.062 10 C -0.191 4.191 11 C 0.004 3.996 12 N -0.365 5.365 13 O 0.099 5.901 14 C -0.041 4.041 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.188 0.812 39 H 0.216 0.784 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -7.116 31.404 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.385 5.385 7 C 0.293 3.707 8 O -0.399 6.399 9 C -0.102 4.102 10 C -0.195 4.195 11 C -0.176 4.176 12 N -0.068 5.068 13 O 0.034 5.966 14 C -0.123 4.123 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.205 0.795 39 H 0.232 0.768 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.917 -4.203 30.895 31.193 hybrid contribution -0.878 -1.578 -0.231 1.821 sum -1.795 -5.782 30.663 31.255 Atomic orbital electron populations 1.22175 0.94922 1.02181 1.02856 1.20789 0.94212 0.97734 0.83171 0.89073 1.22102 0.94532 1.02107 0.98781 1.21426 0.93589 0.98068 0.87646 1.45986 1.07401 1.57670 1.27414 1.20551 0.82241 0.80716 0.87150 1.90800 1.55182 1.44692 1.49271 1.19870 0.89805 1.02899 0.97631 1.20699 0.96461 0.97141 1.05214 1.24906 0.88533 1.01523 1.02590 1.73879 1.21433 0.99980 1.11539 1.84828 1.30589 1.28591 1.52575 1.25802 0.83517 1.01605 1.01330 1.46088 1.69337 1.13940 1.09511 1.20277 0.76786 0.87220 0.83850 1.90702 1.48391 1.15711 1.84426 1.23285 1.04461 1.03484 0.96325 1.84787 1.87147 1.16886 1.02719 1.22313 1.50431 0.98763 0.95351 0.89397 1.24718 0.93369 0.98298 0.94967 1.69937 1.43386 1.35807 1.02572 0.86731 0.81127 0.84856 0.79113 1.19192 1.19949 1.15942 0.91466 0.92444 0.91815 0.90527 0.89687 0.91113 0.90818 0.76581 0.87314 0.87312 0.79488 0.76770 0.76770 0.88523 0.88501 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.36 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 4 C -0.14 -0.74 4.87 -26.74 -0.13 -0.87 16 5 C 0.12 0.89 5.56 -4.04 -0.02 0.87 16 6 N -0.73 -4.02 5.56 -60.29 -0.33 -4.36 16 7 C 0.51 4.05 7.82 -10.99 -0.09 3.96 16 8 O -0.52 -7.19 16.03 5.56 0.09 -7.10 16 9 C -0.06 -0.25 6.28 -29.03 -0.18 -0.44 16 10 C -0.19 -1.38 4.82 -104.42 -0.50 -1.88 16 11 C 0.00 0.03 12.16 -17.06 -0.21 -0.17 16 12 N -0.36 -4.00 12.07 30.36 0.37 -3.64 16 13 O 0.10 0.96 11.20 17.20 0.19 1.15 16 14 C -0.04 -0.28 12.26 29.74 0.36 0.08 16 15 N -0.73 -8.36 4.53 -53.81 -0.24 -8.60 16 16 C 0.53 9.06 7.81 -10.99 -0.09 8.98 16 17 O -0.52 -10.82 15.53 5.55 0.09 -10.73 16 18 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -15.08 10.04 30.94 0.31 -14.76 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.72 13.97 55.49 0.78 -25.94 16 24 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 35 H 0.40 0.74 8.47 -40.82 -0.35 0.39 16 36 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.19 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.22 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -39.84 387.75 -6.32 -46.16 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.14 Total: -0.86 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.24 Total: -3.58 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.56 Total: -42.54 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.37 Total: -16.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.84 -6.32 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077946064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.099 kcal (2) G-P(sol) polarization free energy of solvation -39.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds