Wall clock time and date at job start Tue Mar 31 2020 22:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00406 * 2 1 4 4 H 1.09000 * 109.46818 * 30.00128 * 3 2 1 5 5 C 1.52993 * 109.47314 * 270.00351 * 3 2 1 6 6 C 1.50694 * 109.47284 * 150.00233 * 3 2 1 7 7 N 1.28651 * 124.71783 * 225.25681 * 6 3 2 8 8 C 1.33565 * 115.76241 * 180.22273 * 7 6 3 9 9 C 1.47266 * 123.13746 * 179.82281 * 8 7 6 10 10 O 1.21637 * 119.99901 * 179.72876 * 9 8 7 11 11 N 1.34776 * 120.00332 * 359.73650 * 9 8 7 12 12 C 1.46503 * 120.00155 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.77897 * 36.78476 * 12 11 9 14 14 C 1.54325 * 110.71811 * 273.54768 * 12 11 9 15 15 N 1.47026 * 107.26658 * 263.82756 * 14 12 11 16 16 C 1.36935 * 125.64458 * 181.02332 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.73057 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 C 1.47421 * 108.70759 * 1.28889 * 15 14 12 25 25 C 1.55128 * 104.71921 * 335.55540 * 24 15 14 26 26 H 1.09003 * 111.22610 * 279.17483 * 25 24 15 27 27 O 1.42907 * 110.90653 * 155.27592 * 25 24 15 28 28 C 1.35200 * 113.71688 * 359.56152 * 8 7 6 29 29 S 1.70767 * 124.72293 * 45.02490 * 6 3 2 30 30 H 1.08994 * 109.46661 * 59.99605 * 1 2 3 31 31 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46571 * 300.00244 * 1 2 3 33 33 H 1.09001 * 109.47715 * 300.00257 * 5 3 2 34 34 H 1.09003 * 109.47483 * 59.99466 * 5 3 2 35 35 H 1.09003 * 109.47415 * 179.97438 * 5 3 2 36 36 H 0.96996 * 119.99849 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.88174 * 144.41763 * 14 12 11 38 38 H 1.08993 * 109.88458 * 23.24207 * 14 12 11 39 39 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36459 * 94.47935 * 24 15 14 41 41 H 1.09000 * 110.37050 * 216.80786 * 24 15 14 42 42 H 0.96700 * 113.99883 * 67.97619 * 27 25 24 43 43 H 1.08007 * 125.58604 * 180.23318 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7714 -1.4424 6 6 3.3387 1.2638 0.7103 7 7 3.7308 2.1248 1.5821 8 6 4.9456 1.9177 2.0971 9 6 5.5553 2.8037 3.1031 10 8 6.6646 2.5580 3.5375 11 7 4.8842 3.8867 3.5426 12 6 5.4905 4.7677 4.5438 13 1 6.5636 4.8613 4.3775 14 6 5.2019 4.2535 5.9700 15 7 4.0285 4.9857 6.4688 16 6 3.4617 4.8367 7.7064 17 1 3.8763 4.1287 8.4086 18 6 2.3509 5.5921 8.0565 19 7 1.8423 6.4512 7.1988 20 14 1.5773 5.3883 9.7445 21 1 2.2117 6.3346 10.6972 22 1 0.1222 5.6726 9.6597 23 1 1.7830 3.9962 10.2186 24 6 3.5594 5.9022 5.4136 25 6 4.8096 6.1618 4.5326 26 1 5.4572 6.9164 4.9790 27 8 4.4302 6.5359 3.2066 28 6 5.5609 0.8156 1.6127 29 16 4.5308 0.0641 0.4743 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.8829 1.0775 -1.9564 34 1 1.2569 1.8015 -1.9563 35 1 2.6608 2.7673 -1.4424 36 1 3.9997 4.0827 3.1961 37 1 6.0600 4.4457 6.6141 38 1 4.9880 3.1851 5.9427 39 1 1.0660 6.9787 7.4434 40 1 2.7699 5.4327 4.8269 41 1 3.2042 6.8350 5.8516 42 1 4.0006 7.4004 3.1495 43 1 6.5425 0.4671 1.8983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083461103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:57 Heat of formation + Delta-G solvation = -48.490421 kcal Electronic energy + Delta-G solvation = -27677.420308 eV Core-core repulsion = 23658.016118 eV Total energy + Delta-G solvation = -4019.404190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51079 -39.16664 -38.35651 -37.46807 -35.05507 -33.73753 -32.77142 -31.62118 -29.82950 -28.54752 -27.22710 -27.15735 -25.76091 -24.50954 -23.56192 -21.36504 -20.44212 -19.99514 -19.69775 -18.81454 -17.09064 -16.84578 -16.64438 -16.42195 -16.28514 -15.73672 -15.45490 -15.08878 -14.76485 -14.37490 -14.06155 -13.76207 -13.74140 -13.26409 -13.05955 -12.96378 -12.78425 -12.63717 -12.34851 -12.25862 -12.03071 -11.95936 -11.39512 -11.32407 -11.10290 -10.94419 -10.86509 -10.24913 -10.20195 -10.08612 -9.96051 -9.87065 -9.74439 -9.70169 -9.18269 -9.05446 -8.74283 -8.53366 -6.90507 -5.71332 -3.13164 0.41952 1.11342 1.54453 1.94926 3.05501 3.37680 3.42884 3.44932 3.54731 3.55141 4.08962 4.40384 4.55111 4.63369 4.74842 4.82787 4.99464 5.10048 5.13249 5.21639 5.30549 5.32531 5.39740 5.40125 5.40699 5.54157 5.71661 5.75921 5.78741 5.88010 6.15452 6.25782 6.50836 6.65710 6.68443 6.99111 7.29948 7.32647 7.54625 7.72106 7.95800 8.08612 8.26655 8.51766 9.15313 9.75742 10.38812 11.32809 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.003114 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.755205 B = 8989.984401 C = 9957.708103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.096 0.904 5 C -0.168 4.168 6 C 0.018 3.982 7 N -0.429 5.429 8 C 0.019 3.981 9 C 0.591 3.409 10 O -0.546 6.546 11 N -0.677 5.677 12 C 0.142 3.858 13 H 0.092 0.908 14 C 0.126 3.874 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.917 3.083 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.128 3.872 25 C 0.064 3.936 26 H 0.072 0.928 27 O -0.565 6.565 28 C -0.232 4.232 29 S 0.239 5.761 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.112 0.888 42 H 0.378 0.622 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 -9.343 -19.201 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.227 4.227 6 C -0.261 4.261 7 N -0.146 5.146 8 C -0.116 4.116 9 C 0.374 3.626 10 O -0.424 6.424 11 N -0.326 5.326 12 C 0.037 3.963 13 H 0.110 0.890 14 C 0.000 4.000 15 N -0.327 5.327 16 C -0.349 4.349 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.747 3.253 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.002 3.998 25 C 0.003 3.997 26 H 0.090 0.910 27 O -0.369 6.369 28 C -0.375 4.375 29 S 0.496 5.504 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.129 0.871 42 H 0.225 0.775 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.257 -10.597 -19.361 22.107 hybrid contribution -0.920 1.290 1.640 2.280 sum 0.337 -9.307 -17.721 20.019 Atomic orbital electron populations 1.22862 0.79736 1.03258 1.00613 1.87885 1.20706 1.26409 1.95129 1.20301 0.88436 0.86148 0.94970 0.88621 1.22292 1.03294 1.02530 0.94573 1.26716 1.01977 0.96801 1.00616 1.66864 1.12763 1.26994 1.07935 1.20446 0.91098 0.97808 1.02290 1.17011 0.84675 0.80597 0.80351 1.90786 1.19447 1.73206 1.58967 1.45520 1.21320 1.24434 1.41312 1.22071 0.97451 0.88411 0.88390 0.88984 1.21755 0.91403 0.95925 0.90961 1.44337 1.30887 1.44636 1.12885 1.19115 1.08378 1.18343 0.89059 0.90271 1.24777 0.98196 0.99094 0.98546 1.69741 1.25364 1.28261 1.33953 0.86033 0.78366 0.77684 0.83198 1.21516 1.21638 1.20713 1.22617 0.90710 0.98150 0.88302 1.23748 0.98705 0.93915 0.83303 0.90967 1.86361 1.81638 1.41027 1.27884 1.26725 1.07204 1.00015 1.03532 1.82783 1.05789 1.26583 1.35196 0.93573 0.89125 0.93298 0.91360 0.91003 0.90565 0.74859 0.94421 0.95017 0.93695 0.96068 0.87076 0.77504 0.79241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.76 10.17 -35.23 -0.36 -4.12 16 3 C 0.16 1.63 3.23 -27.89 -0.09 1.54 16 4 H 0.10 0.97 7.79 -51.93 -0.40 0.56 16 5 C -0.17 -1.28 9.51 37.15 0.35 -0.93 16 6 C 0.02 0.23 6.30 -13.61 -0.09 0.14 16 7 N -0.43 -6.59 10.12 -8.51 -0.09 -6.67 16 8 C 0.02 0.31 6.70 -84.53 -0.57 -0.26 16 9 C 0.59 11.14 7.79 -12.59 -0.10 11.04 16 10 O -0.55 -11.27 16.44 5.25 0.09 -11.18 16 11 N -0.68 -12.94 4.77 -53.15 -0.25 -13.19 16 12 C 0.14 2.80 3.13 -66.10 -0.21 2.59 16 13 H 0.09 1.75 7.70 -51.93 -0.40 1.35 16 14 C 0.13 2.83 6.98 -3.06 -0.02 2.81 16 15 N -0.60 -15.43 3.39 -169.93 -0.58 -16.01 16 16 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.35 10.08 55.49 0.56 -25.79 16 20 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.13 3.02 5.62 -2.41 -0.01 3.00 16 25 C 0.06 1.21 4.23 -24.47 -0.10 1.11 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 O -0.56 -9.47 12.63 -35.23 -0.44 -9.91 16 28 C -0.23 -3.05 10.62 29.65 0.31 -2.74 16 29 S 0.24 2.49 22.73 -107.50 -2.44 0.05 16 30 H 0.05 0.25 7.87 -51.93 -0.41 -0.16 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.41 8.02 7.72 -40.82 -0.32 7.70 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.11 2.90 5.85 -51.93 -0.30 2.59 16 42 H 0.38 4.83 9.12 45.56 0.42 5.25 16 43 H 0.19 2.22 8.03 -52.48 -0.42 1.80 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -33.38 374.99 -7.73 -41.11 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.17 Total: 10.18 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 0.33 Total: 12.90 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.36 Total: -61.67 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.72 Total: -25.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.44 Total: 0.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.38 -7.73 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083461103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.381 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds