Wall clock time and date at job start Tue Mar 31 2020 22:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00410 * 2 1 4 4 H 1.09007 * 109.46783 * 329.99691 * 3 2 1 5 5 C 1.52999 * 109.47334 * 89.99227 * 3 2 1 6 6 C 1.50692 * 109.47551 * 209.99652 * 3 2 1 7 7 N 1.29433 * 124.80497 * 314.97154 * 6 3 2 8 8 C 1.30942 * 117.36652 * 179.72388 * 7 6 3 9 9 C 1.35669 * 114.18999 * 0.53233 * 8 7 6 10 10 C 1.46678 * 126.13195 * 179.78665 * 9 8 7 11 11 O 1.21685 * 119.99944 * 179.69257 * 10 9 8 12 12 N 1.34778 * 119.99870 * 359.68054 * 10 9 8 13 13 C 1.46500 * 119.99855 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.88581 * 31.12905 * 13 12 10 15 15 C 1.55129 * 111.19685 * 267.19203 * 13 12 10 16 16 N 1.47428 * 104.71984 * 279.19195 * 15 13 12 17 17 C 1.36934 * 125.64443 * 155.81160 * 16 15 13 18 18 H 1.08000 * 120.00621 * 348.63410 * 17 16 15 19 19 C 1.38815 * 119.99683 * 168.62225 * 17 16 15 20 20 N 1.31621 * 119.99553 * 165.68612 * 19 17 16 21 21 Si 1.86798 * 120.00122 * 345.68767 * 19 17 16 22 22 H 1.48496 * 109.46961 * 65.27675 * 21 19 17 23 23 H 1.48500 * 109.46939 * 305.27748 * 21 19 17 24 24 H 1.48502 * 109.47157 * 185.27781 * 21 19 17 25 25 C 1.47018 * 108.70498 * 335.55338 * 16 15 13 26 26 C 1.54324 * 107.26941 * 1.28520 * 25 16 15 27 27 H 1.09004 * 110.72071 * 263.82743 * 26 25 16 28 28 O 1.42905 * 110.71769 * 140.73996 * 26 25 16 29 29 S 1.70952 * 124.80528 * 134.99510 * 6 3 2 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47188 * 300.00272 * 1 2 3 32 32 H 1.08999 * 109.46984 * 60.00399 * 1 2 3 33 33 H 1.09003 * 109.47684 * 300.00561 * 5 3 2 34 34 H 1.09007 * 109.46807 * 60.00478 * 5 3 2 35 35 H 1.09002 * 109.47558 * 180.02562 * 5 3 2 36 36 H 1.08000 * 122.90788 * 180.34564 * 8 7 6 37 37 H 0.96998 * 120.00090 * 0.02562 * 12 10 9 38 38 H 1.08993 * 110.49450 * 160.34848 * 15 13 12 39 39 H 1.09000 * 110.33897 * 37.95326 * 15 13 12 40 40 H 0.96993 * 120.00287 * 354.93345 * 20 19 17 41 41 H 1.08997 * 109.88355 * 120.70412 * 25 16 15 42 42 H 1.09007 * 109.88020 * 241.71813 * 25 16 15 43 43 H 0.96692 * 114.00441 * 61.45535 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3387 1.2638 -0.7103 7 7 4.2433 0.3554 -0.5325 8 6 5.3452 0.4581 -1.2325 9 6 5.3827 1.5364 -2.0551 10 6 6.4866 1.9051 -2.9478 11 8 6.3993 2.8985 -3.6451 12 7 7.5977 1.1437 -2.9956 13 6 8.7004 1.5123 -3.8869 14 1 8.7563 2.5941 -4.0092 15 6 8.5711 0.8049 -5.2614 16 7 9.1041 -0.5511 -5.0364 17 6 8.7917 -1.6635 -5.7714 18 1 7.9705 -1.6346 -6.4723 19 6 9.5307 -2.8282 -5.6159 20 7 9.0744 -3.9660 -6.0951 21 14 11.1726 -2.7808 -4.7264 22 1 10.9540 -2.4199 -3.3026 23 1 12.0520 -1.7683 -5.3643 24 1 11.8171 -4.1163 -4.8053 25 6 10.0312 -0.5102 -3.8962 26 6 10.0474 0.9408 -3.3708 27 1 10.8874 1.4939 -3.7911 28 8 10.0952 0.9609 -1.9427 29 16 3.8643 2.4101 -1.8645 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2567 1.8015 1.9563 34 1 2.8828 1.0775 1.9564 35 1 2.6606 2.7673 1.4425 36 1 6.1554 -0.2522 -1.1591 37 1 7.6672 0.3517 -2.4399 38 1 9.1624 1.3247 -6.0152 39 1 7.5256 0.7560 -5.5655 40 1 8.1900 -4.0054 -6.4915 41 1 9.6853 -1.1843 -3.1127 42 1 11.0306 -0.8006 -4.2204 43 1 10.8845 0.5451 -1.5697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083462697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:03 Heat of formation + Delta-G solvation = -36.730390 kcal Electronic energy + Delta-G solvation = -27523.601423 eV Core-core repulsion = 23504.707186 eV Total energy + Delta-G solvation = -4018.894237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.37858 -39.61005 -38.40768 -37.95645 -35.44098 -33.99415 -32.85288 -32.01585 -30.23919 -28.59750 -27.89828 -27.16925 -26.14845 -24.01545 -23.23519 -22.03738 -21.10996 -20.24914 -19.59053 -18.54698 -17.76046 -17.46789 -17.11426 -16.49725 -16.03364 -15.94061 -15.71158 -15.28797 -15.07617 -14.57315 -14.29289 -14.12178 -13.79773 -13.68266 -13.50470 -13.05452 -13.02460 -12.88913 -12.68151 -12.41538 -12.10297 -12.01603 -11.74647 -11.41284 -11.39106 -11.31770 -10.83075 -10.48271 -10.46516 -10.14393 -9.99540 -9.64355 -9.57061 -9.34996 -9.17208 -9.08440 -8.96211 -8.68537 -7.13772 -6.37553 -3.30872 0.06663 0.90372 1.45102 2.35310 3.19865 3.28387 3.29960 3.39804 3.45782 3.62585 3.75055 4.16361 4.34724 4.53966 4.64383 4.72481 4.78609 4.85969 4.92996 4.98042 5.00890 5.10122 5.15051 5.22045 5.33762 5.35011 5.35422 5.40783 5.72325 5.75512 5.83482 5.89187 6.01600 6.26093 6.41154 6.44687 6.70753 6.71436 7.48004 7.52744 7.62525 7.67543 8.24179 8.26085 8.96073 9.45536 10.11212 11.12716 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.002944 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.360361 B = 9508.806737 C =10292.730056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.029 3.971 7 N -0.448 5.448 8 C 0.094 3.906 9 C -0.280 4.280 10 C 0.595 3.405 11 O -0.545 6.545 12 N -0.679 5.679 13 C 0.143 3.857 14 H 0.104 0.896 15 C 0.123 3.877 16 N -0.606 5.606 17 C -0.322 4.322 18 H 0.080 0.920 19 C -0.021 4.021 20 N -0.926 5.926 21 Si 1.073 2.927 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.301 1.301 25 C 0.078 3.922 26 C 0.083 3.917 27 H 0.080 0.920 28 O -0.558 6.558 29 S 0.231 5.769 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.407 0.593 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 14.188 15.054 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.281 6.281 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.247 4.247 7 N -0.162 5.162 8 C -0.064 4.064 9 C -0.405 4.405 10 C 0.380 3.620 11 O -0.424 6.424 12 N -0.329 5.329 13 C 0.037 3.963 14 H 0.122 0.878 15 C -0.004 4.004 16 N -0.335 5.335 17 C -0.449 4.449 18 H 0.097 0.903 19 C -0.221 4.221 20 N -0.567 5.567 21 Si 0.907 3.093 22 H -0.216 1.216 23 H -0.227 1.227 24 H -0.229 1.229 25 C -0.047 4.047 26 C 0.023 3.977 27 H 0.098 0.902 28 O -0.363 6.363 29 S 0.489 5.511 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.243 0.757 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.555 14.530 14.778 23.728 hybrid contribution -0.076 -0.330 -0.231 0.409 sum -11.630 14.200 14.548 23.421 Atomic orbital electron populations 1.22896 0.80608 1.03413 1.00065 1.88115 1.19632 1.25497 1.94899 1.20460 0.87340 0.86415 0.95264 0.90009 1.22265 1.03331 1.02222 0.94841 1.27321 1.00392 0.96400 1.00547 1.66034 1.00781 1.25175 1.24207 1.22312 0.96070 0.96161 0.91886 1.25848 1.02031 1.03484 1.09143 1.16608 0.81148 0.83087 0.81154 1.90819 1.80730 1.26869 1.44003 1.45253 1.15522 1.28754 1.43346 1.22322 0.83673 0.99889 0.90442 0.87800 1.22098 0.99029 0.86436 0.92803 1.44692 1.51086 1.04554 1.33159 1.20177 1.15158 0.88479 1.21072 0.90266 1.25873 1.04279 0.91289 1.00664 1.70876 1.19932 1.24736 1.41168 0.83801 0.76310 0.73588 0.75608 1.21597 1.22717 1.22879 1.22760 0.94727 0.95090 0.92160 1.23196 0.96990 0.96408 0.81081 0.90200 1.86451 1.48060 1.82654 1.19135 1.83880 1.07539 1.25813 1.33866 0.89057 0.93731 0.93767 0.91188 0.90515 0.91126 0.79874 0.75691 0.94195 0.92536 0.92721 0.92633 0.94915 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.97 10.32 -35.23 -0.36 -4.34 16 3 C 0.17 1.55 3.22 -27.89 -0.09 1.46 16 4 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 5 C -0.17 -1.25 9.51 37.16 0.35 -0.90 16 6 C 0.03 0.35 6.28 -13.29 -0.08 0.26 16 7 N -0.45 -6.39 10.49 -11.50 -0.12 -6.51 16 8 C 0.09 1.32 10.93 -18.85 -0.21 1.11 16 9 C -0.28 -4.12 6.48 -37.10 -0.24 -4.36 16 10 C 0.60 10.02 7.79 -12.85 -0.10 9.92 16 11 O -0.54 -10.43 16.60 5.20 0.09 -10.34 16 12 N -0.68 -11.15 4.80 -52.92 -0.25 -11.41 16 13 C 0.14 2.40 3.31 -65.66 -0.22 2.19 16 14 H 0.10 1.67 7.54 -51.92 -0.39 1.28 16 15 C 0.12 2.46 6.95 -2.41 -0.02 2.44 16 16 N -0.61 -14.18 3.32 -169.94 -0.56 -14.74 16 17 C -0.32 -9.02 10.56 -15.06 -0.16 -9.18 16 18 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 19 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 20 N -0.93 -28.81 13.70 55.49 0.76 -28.05 16 21 Si 1.07 25.83 24.53 -169.99 -4.17 21.66 16 22 H -0.29 -6.16 5.43 56.52 0.31 -5.86 16 23 H -0.30 -6.90 6.84 56.52 0.39 -6.51 16 24 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 25 C 0.08 1.56 4.38 -3.07 -0.01 1.54 16 26 C 0.08 1.30 4.11 -24.90 -0.10 1.20 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 O -0.56 -7.54 12.69 -35.23 -0.45 -7.99 16 29 S 0.23 2.76 23.01 -107.50 -2.47 0.29 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.18 2.30 7.15 -52.49 -0.38 1.93 16 37 H 0.41 6.41 7.10 -40.82 -0.29 6.12 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 41 H 0.06 1.16 6.70 -51.93 -0.35 0.81 16 42 H 0.03 0.69 3.81 -51.92 -0.20 0.49 16 43 H 0.38 3.62 9.11 45.56 0.42 4.04 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -35.78 367.34 -6.94 -42.72 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.05 Total: 6.93 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 0.12 Total: 6.24 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.18 Total: -60.71 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.72 Total: -22.67 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.17 Total: 21.66 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.47 Total: 0.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.78 -6.94 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083462697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.990 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds