Wall clock time and date at job start Tue Mar 31 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99865 * 2 1 4 4 H 1.08996 * 109.46958 * 29.99695 * 3 2 1 5 5 C 1.52996 * 109.46853 * 269.99851 * 3 2 1 6 6 C 1.50699 * 109.46895 * 150.00098 * 3 2 1 7 7 N 1.29427 * 124.80656 * 44.97377 * 6 3 2 8 8 C 1.30944 * 117.35995 * 179.72841 * 7 6 3 9 9 C 1.35660 * 114.19370 * 0.52843 * 8 7 6 10 10 C 1.46683 * 126.13040 * 179.78655 * 9 8 7 11 11 O 1.21691 * 119.99915 * 179.69013 * 10 9 8 12 12 N 1.34775 * 120.00253 * 359.68935 * 10 9 8 13 13 C 1.46503 * 119.99918 * 180.02562 * 12 10 9 14 14 H 1.08992 * 110.88851 * 31.11905 * 13 12 10 15 15 C 1.55121 * 111.19086 * 267.18249 * 13 12 10 16 16 N 1.47427 * 104.72601 * 279.19259 * 15 13 12 17 17 C 1.36941 * 125.65129 * 155.81238 * 16 15 13 18 18 H 1.08000 * 119.99956 * 349.41172 * 17 16 15 19 19 C 1.38807 * 119.99805 * 169.40424 * 17 16 15 20 20 N 1.31621 * 119.99651 * 152.97452 * 19 17 16 21 21 Si 1.86800 * 120.00224 * 332.97533 * 19 17 16 22 22 H 1.48497 * 109.47027 * 85.21081 * 21 19 17 23 23 H 1.48501 * 109.46963 * 325.20624 * 21 19 17 24 24 H 1.48505 * 109.46835 * 205.20914 * 21 19 17 25 25 C 1.47026 * 108.70146 * 335.55868 * 16 15 13 26 26 C 1.54320 * 107.26821 * 1.28231 * 25 16 15 27 27 H 1.09012 * 110.72007 * 263.83183 * 26 25 16 28 28 O 1.42900 * 110.71879 * 140.73905 * 26 25 16 29 29 S 1.70958 * 124.79978 * 224.99782 * 6 3 2 30 30 H 1.08996 * 109.47127 * 300.00131 * 1 2 3 31 31 H 1.09005 * 109.47216 * 60.00123 * 1 2 3 32 32 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47171 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.47451 * 299.99779 * 5 3 2 35 35 H 1.09003 * 109.47404 * 59.99986 * 5 3 2 36 36 H 1.08004 * 122.90269 * 180.34813 * 8 7 6 37 37 H 0.97001 * 119.99879 * 359.97438 * 12 10 9 38 38 H 1.08999 * 110.49701 * 160.35133 * 15 13 12 39 39 H 1.09007 * 110.34645 * 37.95595 * 15 13 12 40 40 H 0.96999 * 120.00399 * 5.05430 * 20 19 17 41 41 H 1.08998 * 109.88207 * 120.70239 * 25 16 15 42 42 H 1.09000 * 109.87856 * 241.71534 * 25 16 15 43 43 H 0.96701 * 114.00123 * 61.45637 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 4.2429 0.3550 0.5335 8 6 5.3492 0.4641 1.2253 9 6 5.3819 1.5359 2.0563 10 6 6.4855 1.9044 2.9495 11 8 6.3982 2.8981 3.6466 12 7 7.5962 1.1426 2.9982 13 6 8.6982 1.5104 3.8908 14 1 8.3247 2.0148 4.7819 15 6 9.7463 2.3866 3.1560 16 7 10.5745 1.4276 2.4025 17 6 11.3008 1.7121 1.2770 18 1 11.1658 2.6570 0.7718 19 6 12.2106 0.7860 0.7856 20 7 12.5076 0.7718 -0.4966 21 14 13.0134 -0.4400 1.9439 22 1 12.1258 -1.6190 2.1094 23 1 13.2372 0.2004 3.2649 24 1 14.3154 -0.8761 1.3782 25 6 10.4964 0.1164 3.0631 26 6 9.5457 0.2672 4.2694 27 1 10.1096 0.4489 5.1845 28 8 8.7185 -0.8897 4.4088 29 16 3.8642 2.4104 1.8645 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6614 2.7670 -1.4425 34 1 2.8830 1.0775 -1.9563 35 1 1.2568 1.8014 -1.9564 36 1 6.1640 -0.2401 1.1438 37 1 7.6657 0.3503 2.4429 38 1 10.3576 2.9333 3.8741 39 1 9.2512 3.0780 2.4740 40 1 12.1480 1.4537 -1.0854 41 1 10.1004 -0.6252 2.3694 42 1 11.4864 -0.1864 3.4041 43 1 9.2094 -1.7070 4.5707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083462698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:06 Heat of formation + Delta-G solvation = -41.528464 kcal Electronic energy + Delta-G solvation = -27494.547579 eV Core-core repulsion = 23475.445282 eV Total energy + Delta-G solvation = -4019.102297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36233 -39.58710 -38.39361 -37.93018 -35.41161 -33.96222 -32.83886 -32.01246 -30.21183 -28.57675 -27.78433 -27.17200 -26.13585 -24.00778 -23.21857 -22.01469 -20.98778 -20.24076 -19.57478 -18.53262 -17.74585 -17.45175 -17.07208 -16.48301 -16.01834 -15.87789 -15.70711 -15.25666 -15.05682 -14.57249 -14.29143 -14.10714 -13.84928 -13.60195 -13.44591 -13.10196 -12.97325 -12.93319 -12.64546 -12.36470 -12.08171 -11.91646 -11.73616 -11.39771 -11.38860 -11.28889 -10.74879 -10.71216 -10.46333 -10.14001 -9.98208 -9.61525 -9.57407 -9.55406 -9.25894 -9.15274 -8.90381 -8.46316 -7.20566 -6.40096 -3.26535 0.08200 0.91355 1.46335 2.36795 3.22599 3.29829 3.30754 3.42468 3.45534 3.60355 3.76444 4.18544 4.35457 4.51133 4.66460 4.74210 4.79912 4.87280 4.92612 4.99027 4.99036 5.11247 5.14477 5.24962 5.33414 5.37410 5.38621 5.40448 5.74286 5.79708 5.86333 5.91359 6.06312 6.30026 6.42844 6.47380 6.69774 6.73277 7.49403 7.55961 7.64960 7.69483 8.25738 8.26593 8.95636 9.49405 10.14678 11.07969 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.002852 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.890930 B = 9814.292893 C =10396.697222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.168 3.832 4 H 0.082 0.918 5 C -0.169 4.169 6 C 0.029 3.971 7 N -0.448 5.448 8 C 0.094 3.906 9 C -0.280 4.280 10 C 0.595 3.405 11 O -0.545 6.545 12 N -0.679 5.679 13 C 0.144 3.856 14 H 0.104 0.896 15 C 0.122 3.878 16 N -0.602 5.602 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.019 4.019 20 N -0.915 5.915 21 Si 1.070 2.930 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.298 1.298 25 C 0.084 3.916 26 C 0.083 3.917 27 H 0.080 0.920 28 O -0.558 6.558 29 S 0.230 5.770 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.185 0.815 37 H 0.408 0.592 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.177 -0.472 5.186 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.228 4.228 6 C -0.247 4.247 7 N -0.162 5.162 8 C -0.064 4.064 9 C -0.405 4.405 10 C 0.380 3.620 11 O -0.425 6.425 12 N -0.328 5.328 13 C 0.037 3.963 14 H 0.121 0.879 15 C -0.005 4.005 16 N -0.331 5.331 17 C -0.458 4.458 18 H 0.096 0.904 19 C -0.220 4.220 20 N -0.555 5.555 21 Si 0.903 3.097 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.226 1.226 25 C -0.042 4.042 26 C 0.023 3.977 27 H 0.097 0.903 28 O -0.363 6.363 29 S 0.488 5.512 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.243 0.757 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.100 -0.252 5.610 22.803 hybrid contribution 0.279 0.064 -0.303 0.417 sum -21.821 -0.189 5.308 22.458 Atomic orbital electron populations 1.22890 0.80678 1.03320 1.00093 1.88107 1.19571 1.25603 1.94921 1.20464 0.87309 0.86296 0.95331 0.90021 1.22274 1.03345 1.02393 0.94767 1.27315 1.00434 0.96211 1.00713 1.66035 1.00711 1.25466 1.23974 1.22314 0.95915 0.96431 0.91756 1.25847 1.02031 1.03414 1.09171 1.16610 0.81011 0.83137 0.81255 1.90819 1.81261 1.26407 1.43995 1.45250 1.15242 1.28794 1.43520 1.22300 0.86314 0.94546 0.93102 0.87857 1.22100 0.91107 0.92666 0.94617 1.44688 1.55475 1.03094 1.29850 1.20013 1.19182 1.06166 1.00447 0.90438 1.25800 0.97151 1.00769 0.98323 1.70912 1.50422 1.32496 1.01698 0.83708 0.76314 0.75315 0.74315 1.22240 1.22182 1.22634 1.22423 0.97106 0.91089 0.93572 1.23184 0.91249 0.85628 0.97633 0.90252 1.86458 1.36675 1.18007 1.95169 1.83873 1.07685 1.25852 1.33746 0.93819 0.93695 0.89124 0.91041 0.90444 0.91172 0.79862 0.75663 0.94395 0.92569 0.92574 0.93159 0.94974 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.86 10.32 -35.23 -0.36 -4.23 16 3 C 0.17 1.57 3.23 -27.89 -0.09 1.48 16 4 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 5 C -0.17 -1.38 9.51 37.16 0.35 -1.03 16 6 C 0.03 0.35 6.28 -13.29 -0.08 0.26 16 7 N -0.45 -6.45 10.49 -11.50 -0.12 -6.57 16 8 C 0.09 1.34 10.93 -18.85 -0.21 1.13 16 9 C -0.28 -4.15 6.48 -37.10 -0.24 -4.39 16 10 C 0.60 10.11 7.79 -12.85 -0.10 10.01 16 11 O -0.55 -10.51 16.60 5.20 0.09 -10.42 16 12 N -0.68 -11.25 4.80 -52.92 -0.25 -11.51 16 13 C 0.14 2.43 3.31 -65.67 -0.22 2.22 16 14 H 0.10 1.68 7.54 -51.93 -0.39 1.29 16 15 C 0.12 2.44 6.95 -2.41 -0.02 2.42 16 16 N -0.60 -14.12 3.29 -169.93 -0.56 -14.67 16 17 C -0.33 -9.23 10.43 -15.06 -0.16 -9.39 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 19 C -0.02 -0.55 5.43 -17.43 -0.09 -0.65 16 20 N -0.91 -28.12 13.70 55.49 0.76 -27.36 16 21 Si 1.07 25.86 24.66 -169.99 -4.19 21.66 16 22 H -0.29 -6.57 6.76 56.52 0.38 -6.19 16 23 H -0.29 -6.74 6.71 56.52 0.38 -6.36 16 24 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.08 1.68 4.71 -3.06 -0.01 1.67 16 26 C 0.08 1.31 4.11 -24.90 -0.10 1.21 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 O -0.56 -7.64 12.69 -35.23 -0.45 -8.09 16 29 S 0.23 2.78 23.01 -107.50 -2.47 0.31 16 30 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.18 2.35 7.15 -52.48 -0.38 1.97 16 37 H 0.41 6.50 7.10 -40.82 -0.29 6.21 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 41 H 0.05 1.06 7.74 -51.93 -0.40 0.66 16 42 H 0.03 0.68 3.75 -51.93 -0.19 0.49 16 43 H 0.38 3.67 9.11 45.56 0.42 4.09 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -35.39 369.75 -6.90 -42.29 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.03 Total: 6.82 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.12 Total: 6.20 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.17 Total: -60.12 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.72 Total: -22.74 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -4.19 Total: 21.66 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.47 Total: 0.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.39 -6.90 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083462698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.765 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds