Wall clock time and date at job start Tue Mar 31 2020 23:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47033 * 2 1 4 4 C 1.34230 * 116.99898 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99978 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47372 * 185.99688 * 6 4 3 8 8 C 1.46901 * 111.00395 * 290.57818 * 7 6 4 9 9 C 1.50701 * 109.46928 * 287.94979 * 8 7 6 10 10 H 1.08005 * 120.00102 * 355.69423 * 9 8 7 11 11 C 1.37879 * 120.00353 * 175.69060 * 9 8 7 12 12 N 1.31518 * 119.99560 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00442 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46675 * 59.99940 * 13 11 9 15 15 H 1.48498 * 109.46992 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47082 * 300.00270 * 13 11 9 17 17 C 1.38759 * 110.99615 * 54.52851 * 7 6 4 18 18 N 1.32847 * 120.50267 * 236.06812 * 17 7 6 19 19 C 1.32513 * 120.66364 * 179.97438 * 18 17 7 20 20 S 1.76194 * 119.13579 * 180.02562 * 19 18 17 21 21 C 1.81005 * 100.00090 * 179.97438 * 20 19 18 22 22 N 1.32444 * 121.73273 * 359.97438 * 19 18 17 23 23 C 1.32585 * 120.95680 * 359.77434 * 22 19 18 24 24 C 1.38450 * 119.23542 * 0.47748 * 23 22 19 25 25 O 1.36124 * 120.79434 * 179.78550 * 24 23 22 26 26 C 1.42902 * 116.99828 * 359.72473 * 25 24 23 27 27 H 1.09000 * 109.46801 * 60.00305 * 1 2 3 28 28 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47342 * 300.00384 * 1 2 3 30 30 H 1.08997 * 109.47342 * 239.99616 * 2 1 3 31 31 H 1.09000 * 109.46801 * 119.99694 * 2 1 3 32 32 H 1.09005 * 109.46892 * 66.00181 * 6 4 3 33 33 H 1.08996 * 109.47466 * 306.00096 * 6 4 3 34 34 H 1.09003 * 109.47182 * 47.94460 * 8 7 6 35 35 H 1.08995 * 109.47722 * 167.94674 * 8 7 6 36 36 H 0.97000 * 119.99697 * 179.97438 * 12 11 9 37 37 H 1.09005 * 109.46932 * 59.99821 * 21 20 19 38 38 H 1.09003 * 109.47375 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47016 * 300.00260 * 21 20 19 40 40 H 1.07996 * 120.38239 * 180.24707 * 23 22 19 41 41 H 1.09005 * 109.47092 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.47274 * 59.99400 * 26 25 24 43 43 H 1.09003 * 109.47043 * 299.99399 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3807 2.8634 -0.1440 8 6 6.0014 2.3053 1.0649 9 6 5.9324 3.3184 2.1784 10 1 5.5367 4.3050 1.9872 11 6 6.3743 2.9859 3.4414 12 7 6.8556 1.7843 3.6745 13 14 6.2894 4.2418 4.8215 14 1 4.8776 4.6515 5.0317 15 1 6.8213 3.6409 6.0710 16 1 7.1013 5.4312 4.4590 17 6 5.7330 2.1296 -1.2678 18 7 6.5333 1.0747 -1.1607 19 6 6.8713 0.3714 -2.2317 20 16 7.9347 -1.0208 -2.0433 21 6 8.0447 -1.5676 -3.7653 22 7 6.4301 0.6868 -3.4400 23 6 5.6240 1.7235 -3.6226 24 6 5.2497 2.4894 -2.5316 25 8 4.4270 3.5632 -2.6833 26 6 3.9819 3.8573 -4.0090 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.6729 3.4334 0.9385 33 1 3.5018 3.5035 -0.8319 34 1 5.4694 1.4016 1.3624 35 1 7.0437 2.0621 0.8591 36 1 7.1668 1.5505 4.5629 37 1 8.4659 -0.7677 -4.3743 38 1 8.6852 -2.4475 -3.8269 39 1 7.0489 -1.8172 -4.1315 40 1 5.2665 1.9700 -4.6114 41 1 3.3344 4.7340 -3.9887 42 1 3.4278 3.0057 -4.4035 43 1 4.8439 4.0565 -4.6458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157150592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:53 Heat of formation + Delta-G solvation = -47.743278 kcal Electronic energy + Delta-G solvation = -28940.193790 eV Core-core repulsion = 24920.821998 eV Total energy + Delta-G solvation = -4019.371792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20961 -39.99403 -38.22130 -37.36216 -35.65330 -32.94509 -32.40026 -31.65813 -30.53999 -28.83645 -28.32794 -27.41698 -26.42428 -23.75861 -23.49372 -22.97272 -21.51629 -20.46930 -18.19570 -17.92681 -17.66403 -17.38199 -16.45690 -16.36232 -15.92128 -15.65239 -15.30997 -14.77077 -14.57150 -14.29499 -14.28522 -13.95114 -13.82324 -13.49416 -13.23566 -13.05591 -12.78421 -12.57849 -12.22122 -12.12071 -12.01331 -11.60511 -11.59835 -11.41956 -11.05433 -10.98859 -10.79633 -10.73144 -10.51120 -10.30445 -10.26470 -10.21650 -10.05654 -9.49993 -9.10256 -8.80354 -8.41316 -7.79998 -7.21503 -6.00153 -4.05376 1.18558 1.37319 1.56012 2.40685 2.64048 2.99271 3.23634 3.33783 3.38505 3.40365 3.84887 4.16471 4.43833 4.48425 4.76311 4.93004 4.97185 5.00462 5.06731 5.12951 5.18107 5.24764 5.28756 5.33813 5.33875 5.39088 5.43449 5.68977 5.75018 5.80337 5.86402 5.94322 5.98187 6.12665 6.63926 6.73074 7.15749 7.25761 7.48859 7.69088 7.82293 8.04506 8.18943 8.31723 8.40666 9.01427 9.57660 11.09322 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007862 B = 0.005016 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.427254 B = 5580.910480 C = 6848.391513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.426 3.574 5 O -0.484 6.484 6 C 0.074 3.926 7 N -0.438 5.438 8 C 0.187 3.813 9 C -0.528 4.528 10 H 0.064 0.936 11 C 0.062 3.938 12 N -0.886 5.886 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.375 3.625 18 N -0.465 5.465 19 C 0.287 3.713 20 S 0.003 5.997 21 C -0.145 4.145 22 N -0.527 5.527 23 C 0.081 3.919 24 C -0.014 4.014 25 O -0.296 6.296 26 C 0.023 3.977 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.051 0.949 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 -2.093 -16.266 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.267 3.733 5 O -0.369 6.369 6 C -0.054 4.054 7 N -0.154 5.154 8 C 0.064 3.936 9 C -0.567 4.567 10 H 0.082 0.918 11 C -0.141 4.141 12 N -0.524 5.524 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.128 3.872 18 N -0.187 5.187 19 C -0.091 4.091 20 S 0.235 5.765 21 C -0.314 4.314 22 N -0.249 5.249 23 C -0.085 4.085 24 C -0.070 4.070 25 O -0.208 6.208 26 C -0.073 4.073 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.182 0.818 41 H 0.121 0.879 42 H 0.070 0.930 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.201 -3.186 -14.905 16.857 hybrid contribution -1.311 1.066 -0.561 1.780 sum -8.512 -2.120 -15.466 17.781 Atomic orbital electron populations 1.21776 0.92935 1.02583 1.03315 1.22915 0.94996 0.81090 1.02349 1.86507 1.25189 1.31713 1.84523 1.25275 0.80644 0.94585 0.72821 1.90771 1.59551 1.42737 1.43837 1.22123 0.85731 0.90043 1.07507 1.59506 1.06102 1.44704 1.05077 1.20130 0.96408 0.95132 0.81929 1.21124 1.43178 0.98995 0.93392 0.91762 1.24956 0.95197 0.95391 0.98570 1.69994 1.41132 1.19080 1.22145 0.86563 0.78389 0.81372 0.81091 1.20192 1.21294 1.20094 1.19836 0.90715 0.86745 0.89855 1.68739 1.15599 1.03811 1.30513 1.24524 0.98660 0.99618 0.86284 1.85963 1.54986 1.25642 1.09938 1.23490 1.06153 1.04578 0.97211 1.68527 1.14094 1.18208 1.24034 1.22877 0.95764 0.91835 0.97999 1.20224 0.98949 0.92584 0.95223 1.86208 1.61353 1.43530 1.29666 1.23079 0.99522 1.01641 0.83058 0.91763 0.90606 0.91420 0.91966 0.91254 0.84256 0.86065 0.94432 0.93076 0.92718 0.89540 0.88144 0.89608 0.81792 0.87911 0.93039 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.36 -6.16 10.22 -39.26 -0.40 -6.56 16 4 C 0.43 8.53 7.22 36.01 0.26 8.79 16 5 O -0.48 -11.30 12.21 -18.75 -0.23 -11.52 16 6 C 0.07 1.43 5.48 -4.98 -0.03 1.40 16 7 N -0.44 -9.95 4.64 -175.60 -0.81 -10.77 16 8 C 0.19 5.08 3.87 -4.97 -0.02 5.07 16 9 C -0.53 -14.79 8.41 -34.44 -0.29 -15.08 16 10 H 0.06 1.72 7.70 -52.48 -0.40 1.31 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 13 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.38 8.12 4.49 -154.54 -0.69 7.43 16 18 N -0.46 -10.72 7.92 -12.57 -0.10 -10.82 16 19 C 0.29 5.71 7.85 -90.97 -0.71 5.00 16 20 S 0.00 0.04 22.89 -107.50 -2.46 -2.42 16 21 C -0.14 -1.70 9.61 101.05 0.97 -0.73 16 22 N -0.53 -9.16 9.12 -13.45 -0.12 -9.29 16 23 C 0.08 1.26 10.29 -17.15 -0.18 1.08 16 24 C -0.01 -0.25 6.44 -38.84 -0.25 -0.50 16 25 O -0.30 -4.35 7.98 -20.13 -0.16 -4.51 16 26 C 0.02 0.20 9.84 101.05 0.99 1.20 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.14 2.67 7.21 -51.93 -0.37 2.29 16 33 H 0.12 1.98 5.83 -51.93 -0.30 1.68 16 34 H 0.04 1.13 5.92 -51.93 -0.31 0.82 16 35 H 0.05 1.55 7.26 -51.93 -0.38 1.17 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.00 8.11 -51.91 -0.42 0.57 16 38 H 0.10 0.90 8.14 -51.91 -0.42 0.48 16 39 H 0.08 1.00 8.11 -51.91 -0.42 0.58 16 40 H 0.17 1.84 6.44 -52.49 -0.34 1.50 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.40 7.70 -51.93 -0.40 0.01 16 43 H 0.05 0.43 7.72 -51.93 -0.40 0.03 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -35.25 371.83 -8.24 -43.49 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.84 Total: 1.10 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 0.57 Total: 15.30 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.30 Total: -56.98 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.79 Total: -22.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.46 Total: -2.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.25 -8.24 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157150592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.254 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds