Wall clock time and date at job start Tue Mar 31 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46949 * 179.97438 * 6 4 3 8 8 C 1.46504 * 119.99881 * 270.00337 * 7 6 4 9 9 C 1.50700 * 109.47207 * 89.99965 * 8 7 6 10 10 H 1.07995 * 120.00038 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99575 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00609 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99620 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47197 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47241 * 120.00083 * 13 11 9 16 16 H 1.48504 * 109.46905 * 239.99769 * 13 11 9 17 17 C 1.38598 * 119.99996 * 89.99910 * 7 6 4 18 18 C 1.39317 * 120.44826 * 4.72641 * 17 7 6 19 19 C 1.38914 * 118.44837 * 179.71417 * 18 17 7 20 20 O 1.35544 * 120.41324 * 180.30638 * 19 18 17 21 21 C 1.42896 * 117.00045 * 180.25473 * 20 19 18 22 22 N 1.32943 * 119.16991 * 0.55502 * 19 18 17 23 23 C 1.32506 * 120.83155 * 359.73191 * 22 19 18 24 24 S 1.76203 * 119.15280 * 179.97438 * 23 22 19 25 25 C 1.80997 * 100.00214 * 359.97438 * 24 23 22 26 26 N 1.32516 * 121.69397 * 359.96847 * 23 22 19 27 27 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 28 28 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 29 29 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 31 31 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 32 32 H 1.09000 * 109.47161 * 299.99883 * 6 4 3 33 33 H 1.09001 * 109.46740 * 60.00026 * 6 4 3 34 34 H 1.09003 * 109.46763 * 209.99449 * 8 7 6 35 35 H 1.08995 * 109.47081 * 329.99868 * 8 7 6 36 36 H 0.96999 * 120.00338 * 180.02562 * 12 11 9 37 37 H 1.07997 * 120.77263 * 359.97438 * 18 17 7 38 38 H 1.09002 * 109.47265 * 300.00022 * 21 20 19 39 39 H 1.09003 * 109.47421 * 59.99831 * 21 20 19 40 40 H 1.09000 * 109.47327 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47097 * 300.00234 * 25 24 23 42 42 H 1.09001 * 109.47264 * 60.00080 * 25 24 23 43 43 H 1.09001 * 109.47240 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 7 5.3838 2.8607 -0.0010 8 6 6.1152 2.8229 1.2678 9 6 6.2916 1.3911 1.7034 10 1 5.8979 0.5895 1.0962 11 6 6.9547 1.1047 2.8778 12 7 7.4337 2.0808 3.6176 13 14 7.1741 -0.6703 3.4175 14 1 6.5491 -1.5726 2.4174 15 1 8.6225 -0.9791 3.5267 16 1 6.5245 -0.8700 4.7379 17 6 6.0759 2.8239 -1.2013 18 6 5.3985 2.9579 -2.4113 19 6 6.1340 2.9209 -3.5891 20 8 5.5163 3.0536 -4.7883 21 6 6.3423 2.9989 -5.9531 22 7 7.4507 2.7487 -3.5256 23 6 8.0630 2.6185 -2.3578 24 16 9.8101 2.3916 -2.3252 25 6 10.1643 2.4229 -4.0999 26 7 7.3953 2.6546 -1.2137 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.5845 3.4693 -0.8912 33 1 3.5851 3.4698 0.8888 34 1 7.0932 3.2861 1.1372 35 1 5.5538 3.3672 2.0271 36 1 7.9006 1.8792 4.4436 37 1 4.3270 3.0918 -2.4328 38 1 7.0800 3.8005 -5.9133 39 1 6.8531 2.0368 -5.9916 40 1 5.7241 3.1184 -6.8428 41 1 9.6220 1.6160 -4.5929 42 1 9.8497 3.3797 -4.5164 43 1 11.2347 2.2921 -4.2591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:56 Heat of formation + Delta-G solvation = -55.196997 kcal Electronic energy + Delta-G solvation = -28174.840597 eV Core-core repulsion = 24155.145588 eV Total energy + Delta-G solvation = -4019.695009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70648 -39.97389 -38.34588 -36.81735 -35.62607 -32.73404 -32.22926 -31.62750 -30.98438 -28.77731 -28.68795 -27.52375 -26.06698 -24.15205 -23.32116 -22.97322 -21.50639 -20.50692 -18.45295 -17.64888 -17.48182 -16.59303 -16.50879 -16.23128 -15.99421 -15.78438 -15.47424 -14.95181 -14.57549 -14.27057 -14.22405 -14.07628 -13.92269 -13.39331 -13.26313 -13.01426 -12.76743 -12.53675 -12.31884 -12.08884 -12.03310 -11.61253 -11.54828 -11.48036 -11.25483 -11.15047 -10.70502 -10.63068 -10.52986 -10.31445 -10.13866 -10.02276 -9.80041 -9.17716 -9.15679 -8.81020 -8.33884 -7.57712 -7.32773 -5.94452 -3.95263 1.36898 1.54105 1.83870 2.38199 2.70599 2.85042 3.10860 3.36685 3.44417 3.52206 3.62821 4.25110 4.54858 4.71423 4.96168 4.98637 5.09763 5.14428 5.16811 5.23864 5.24161 5.28578 5.29764 5.35448 5.39779 5.46022 5.51180 5.61718 5.71578 5.74838 5.80489 5.86065 5.94963 6.05582 6.67054 6.77930 7.18734 7.37952 7.43015 7.75384 7.96920 8.06359 8.26680 8.32710 8.60599 9.19282 9.69042 11.13924 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007829 B = 0.005140 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.789047 B = 5446.654212 C = 8157.849338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.430 3.570 5 O -0.464 6.464 6 C 0.137 3.863 7 N -0.555 5.555 8 C 0.250 3.750 9 C -0.517 4.517 10 H 0.080 0.920 11 C 0.060 3.940 12 N -0.901 5.901 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.287 1.287 17 C 0.489 3.511 18 C -0.336 4.336 19 C 0.393 3.607 20 O -0.305 6.305 21 C 0.042 3.958 22 N -0.629 5.629 23 C 0.368 3.632 24 S 0.010 5.990 25 C -0.146 4.146 26 N -0.536 5.536 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.260 0.740 37 H 0.139 0.861 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 2.774 -15.477 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.268 3.732 5 O -0.346 6.346 6 C 0.010 3.990 7 N -0.263 5.263 8 C 0.132 3.868 9 C -0.556 4.556 10 H 0.098 0.902 11 C -0.141 4.141 12 N -0.541 5.541 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.213 1.213 17 C 0.244 3.756 18 C -0.367 4.367 19 C 0.207 3.793 20 O -0.211 6.211 21 C -0.053 4.053 22 N -0.369 5.369 23 C -0.010 4.010 24 S 0.242 5.758 25 C -0.315 4.315 26 N -0.264 5.264 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.838 2.258 -14.269 15.235 hybrid contribution -1.477 -1.081 -0.711 1.963 sum -6.315 1.177 -14.980 16.299 Atomic orbital electron populations 1.21781 0.93047 1.02580 1.03258 1.22910 0.94839 0.80958 1.02512 1.86465 1.25203 1.31862 1.85047 1.24599 0.80361 0.94162 0.74059 1.90739 1.59667 1.42415 1.41827 1.20907 0.81267 0.90702 1.06093 1.46886 1.02721 1.71451 1.05217 1.19575 0.92490 0.98322 0.76441 1.21806 1.35103 0.92696 1.05984 0.90199 1.24878 0.95560 0.97081 0.96531 1.69939 1.38533 1.31132 1.14497 0.86518 0.77806 0.85543 0.78076 1.19806 1.20968 1.21334 1.18037 0.87573 0.84410 0.85593 1.20841 1.01819 1.24095 0.89995 1.19394 0.87423 0.87073 0.85387 1.86196 1.35885 1.86588 1.12395 1.22816 0.95433 1.02381 0.84709 1.68256 1.09564 1.29982 1.29067 1.24142 1.00018 0.92049 0.84833 1.86036 0.93068 1.89205 1.07476 1.23491 1.04804 1.06592 0.96655 1.68198 1.07080 1.23510 1.27659 0.91535 0.91714 0.90646 0.91697 0.91289 0.87189 0.85805 0.92713 0.94900 0.93056 0.84319 0.92387 0.92414 0.88883 0.89593 0.89603 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.69 10.22 -39.26 -0.40 -6.09 16 4 C 0.43 7.89 8.03 36.01 0.29 8.18 16 5 O -0.46 -10.61 13.53 -18.74 -0.25 -10.86 16 6 C 0.14 2.25 5.90 -5.19 -0.03 2.22 16 7 N -0.56 -11.71 2.12 -176.47 -0.37 -12.09 16 8 C 0.25 6.33 5.20 -5.19 -0.03 6.30 16 9 C -0.52 -14.74 8.98 -34.44 -0.31 -15.05 16 10 H 0.08 2.42 5.51 -52.49 -0.29 2.13 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 13 Si 0.89 22.93 29.54 -169.99 -5.02 17.91 16 14 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 C 0.49 10.36 7.38 -154.80 -1.14 9.22 16 18 C -0.34 -6.10 9.27 -38.93 -0.36 -6.46 16 19 C 0.39 6.84 7.52 -16.82 -0.13 6.72 16 20 O -0.31 -4.50 10.49 -18.33 -0.19 -4.69 16 21 C 0.04 0.45 10.41 101.05 1.05 1.50 16 22 N -0.63 -11.08 8.06 -13.59 -0.11 -11.19 16 23 C 0.37 7.25 7.85 -90.92 -0.71 6.54 16 24 S 0.01 0.16 22.89 -107.50 -2.46 -2.31 16 25 C -0.15 -1.65 9.61 101.05 0.97 -0.68 16 26 N -0.54 -12.19 9.27 -12.73 -0.12 -12.31 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.11 1.41 6.05 -51.93 -0.31 1.09 16 33 H 0.12 1.76 7.89 -51.93 -0.41 1.35 16 34 H 0.05 1.53 7.48 -51.93 -0.39 1.14 16 35 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.14 2.16 6.14 -52.49 -0.32 1.84 16 38 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.98 8.11 -51.91 -0.42 0.56 16 42 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 43 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -35.14 381.52 -8.24 -43.38 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.91 Total: -1.66 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 0.12 Total: 20.16 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.14 Total: -61.59 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.85 Total: -21.64 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.46 Total: -2.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.14 -8.24 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.814 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds