Wall clock time and date at job start Tue Mar 31 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45209 * 109.46936 * 2 1 4 4 C 1.34763 * 116.99984 * 180.02562 * 3 2 1 5 5 O 1.21519 * 119.99693 * 359.97438 * 4 3 2 6 6 C 1.47294 * 119.99932 * 179.97438 * 4 3 2 7 7 C 1.39833 * 121.00147 * 5.53142 * 6 4 3 8 8 N 1.32179 * 118.98953 * 180.02562 * 7 6 4 9 9 C 1.31979 * 121.20895 * 0.02562 * 8 7 6 10 10 S 1.76194 * 118.88094 * 180.02562 * 9 8 7 11 11 C 1.81398 * 103.00028 * 89.99891 * 10 9 8 12 12 O 1.42100 * 103.00298 * 336.14985 * 10 9 8 13 13 N 1.31670 * 122.23852 * 359.73794 * 9 8 7 14 14 C 1.32986 * 120.84703 * 0.52642 * 13 9 8 15 15 N 1.37839 * 120.63948 * 179.76063 * 14 13 9 16 16 C 1.46503 * 120.00163 * 354.30686 * 15 14 13 17 17 C 1.52998 * 109.46769 * 179.72277 * 16 15 14 18 18 C 1.53006 * 109.46691 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47000 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00036 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47371 * 90.00376 * 23 21 19 25 25 H 1.48500 * 109.47466 * 210.00687 * 23 21 19 26 26 H 1.48502 * 109.47339 * 329.99972 * 23 21 19 27 27 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47259 * 300.00065 * 1 2 3 29 29 H 1.08993 * 109.47631 * 59.99930 * 1 2 3 30 30 H 1.08994 * 109.47303 * 240.00272 * 2 1 3 31 31 H 1.09001 * 109.47550 * 119.99784 * 2 1 3 32 32 H 1.08004 * 120.49874 * 0.04343 * 7 6 4 33 33 H 1.09005 * 109.47034 * 60.00425 * 11 10 9 34 34 H 1.09000 * 109.47399 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47383 * 300.00242 * 11 10 9 36 36 H 0.97000 * 119.99804 * 174.03267 * 15 14 13 37 37 H 1.08997 * 109.46747 * 299.72346 * 16 15 14 38 38 H 1.09001 * 109.46786 * 59.72454 * 16 15 14 39 39 H 1.08997 * 109.47543 * 299.99582 * 17 16 15 40 40 H 1.09001 * 109.47322 * 60.00506 * 17 16 15 41 41 H 1.08997 * 109.47068 * 299.99696 * 18 17 16 42 42 H 1.08993 * 109.47183 * 59.99801 * 18 17 16 43 43 H 0.96995 * 119.99549 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3499 1.5457 -0.0005 5 8 4.0902 0.5819 -0.0005 6 6 3.9129 2.9068 -0.0011 7 6 3.0857 4.0283 0.1144 8 7 3.6332 5.2314 0.1088 9 6 4.9388 5.3881 -0.0038 10 16 5.6033 7.0199 -0.0035 11 6 5.9166 7.3326 1.7556 12 8 4.5061 7.8120 -0.4372 13 7 5.7623 4.3662 -0.1107 14 6 5.3028 3.1183 -0.1199 15 7 6.1682 2.0518 -0.2370 16 6 7.5938 2.2884 -0.4779 17 6 8.3265 0.9477 -0.5594 18 6 9.8155 1.1948 -0.8104 19 6 10.5371 -0.1257 -0.8913 20 1 9.9887 -1.0488 -0.7749 21 6 11.8975 -0.1554 -1.1139 22 7 12.5653 0.9688 -1.2552 23 14 12.7921 -1.7921 -1.2135 24 1 12.8024 -2.2659 -2.6209 25 1 14.1887 -1.6227 -0.7380 26 1 12.0965 -2.7892 -0.3607 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0159 3.9132 0.2070 33 1 6.6215 6.5933 2.1362 34 1 6.3366 8.3310 1.8781 35 1 4.9807 7.2613 2.3097 36 1 5.8340 1.1449 -0.1559 37 1 7.7189 2.8285 -1.4163 38 1 8.0072 2.8793 0.3394 39 1 8.2014 0.4076 0.3790 40 1 7.9131 0.3568 -1.3767 41 1 9.9410 1.7351 -1.7487 42 1 10.2286 1.7856 0.0071 43 1 13.5224 0.9478 -1.4114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:40 Heat of formation + Delta-G solvation = -81.645582 kcal Electronic energy + Delta-G solvation = -26712.394901 eV Core-core repulsion = 22691.552995 eV Total energy + Delta-G solvation = -4020.841906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46756 -40.17889 -37.43796 -36.49747 -36.01806 -34.08315 -33.33766 -32.45106 -31.83518 -30.44972 -29.11545 -26.80106 -26.09344 -24.16705 -23.43711 -22.59114 -21.75897 -20.53045 -19.14715 -18.48123 -17.64968 -17.19030 -16.97213 -16.89471 -16.29537 -15.81028 -15.71548 -14.97458 -14.78332 -14.53202 -14.48085 -14.22107 -14.09021 -13.95225 -13.76405 -13.17948 -13.00068 -12.48216 -12.36509 -12.35654 -12.33822 -12.09427 -11.89786 -11.85372 -11.22729 -11.05142 -10.89989 -10.86826 -10.78642 -10.60647 -10.45531 -10.32093 -9.85601 -9.63296 -9.43242 -9.16465 -8.78735 -8.39838 -8.28858 -6.05012 -4.07558 -0.06415 1.15770 1.30741 2.04119 2.23938 2.35125 2.97994 3.29386 3.35911 3.38645 3.40845 3.63869 4.12099 4.33738 4.41113 4.42560 4.57081 4.60770 4.62750 4.90829 4.91347 4.96470 5.05947 5.31231 5.32257 5.39680 5.52826 5.59797 5.67051 5.72075 5.80463 6.02897 6.05963 6.49957 6.51906 6.54501 6.92499 7.01220 7.28967 7.55507 7.59364 7.71330 7.91141 7.93808 8.35315 8.98661 9.56834 11.06248 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007734 B = 0.003048 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.501133 B = 9184.823761 C =12587.653043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.532 3.468 5 O -0.512 6.512 6 C -0.299 4.299 7 C 0.232 3.768 8 N -0.532 5.532 9 C 0.047 3.953 10 S 1.392 4.608 11 C -0.495 4.495 12 O -0.822 6.822 13 N -0.515 5.515 14 C 0.476 3.524 15 N -0.670 5.670 16 C 0.111 3.889 17 C -0.124 4.124 18 C 0.027 3.973 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.427 0.573 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.940 7.432 4.256 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.377 3.623 5 O -0.401 6.401 6 C -0.313 4.313 7 C 0.065 3.935 8 N -0.252 5.252 9 C -0.314 4.314 10 S 1.580 4.420 11 C -0.654 4.654 12 O -0.817 6.817 13 N -0.240 5.240 14 C 0.226 3.774 15 N -0.304 5.304 16 C -0.012 4.012 17 C -0.162 4.162 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.275 0.725 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.822 8.517 3.408 20.938 hybrid contribution -1.736 -2.718 1.231 3.452 sum -20.557 5.799 4.639 21.858 Atomic orbital electron populations 1.21819 0.92366 1.03175 1.03624 1.23109 0.95429 0.79495 1.03085 1.86522 1.23110 1.32952 1.84274 1.20492 0.80802 0.88671 0.72304 1.90609 1.59513 1.42356 1.47669 1.20129 0.94173 0.93098 1.23857 1.23536 1.00516 0.86231 0.83230 1.68840 1.12543 1.25029 1.18751 1.33654 0.91109 1.13993 0.92616 1.70964 1.05755 0.76021 0.89264 1.27681 1.08104 1.09071 1.20554 1.93094 1.54988 1.60714 1.72879 1.68258 1.38104 0.96926 1.20750 1.18654 0.86059 0.88374 0.84355 1.45956 1.08626 1.07379 1.68447 1.21944 0.76933 1.00315 1.01986 1.21927 0.99426 0.93615 1.01202 1.19013 0.87227 0.97379 0.97443 1.21205 0.92893 0.92705 1.49336 0.92690 1.25003 0.97697 0.96363 0.95276 1.69955 1.08200 1.25831 1.49277 0.86591 0.78998 0.84089 0.78308 1.20650 1.21177 1.19917 0.90010 0.91401 0.91348 0.90813 0.90867 0.80499 0.86306 0.86660 0.89382 0.72519 0.90898 0.90659 0.92641 0.92649 0.96117 0.96093 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.52 6.20 37.16 0.23 0.75 16 3 O -0.35 -3.76 9.58 -40.66 -0.39 -4.15 16 4 C 0.53 6.91 7.89 34.41 0.27 7.18 16 5 O -0.51 -7.59 13.61 -19.28 -0.26 -7.86 16 6 C -0.30 -4.01 5.92 -104.54 -0.62 -4.63 16 7 C 0.23 2.88 10.89 -16.81 -0.18 2.70 16 8 N -0.53 -7.51 9.96 -13.47 -0.13 -7.65 16 9 C 0.05 0.62 7.36 -92.10 -0.68 -0.06 16 10 S 1.39 12.95 14.41 -107.50 -1.55 11.40 16 11 C -0.50 -3.71 10.70 101.05 1.08 -2.62 16 12 O -0.82 -12.12 17.55 -35.23 -0.62 -12.74 16 13 N -0.52 -7.04 9.60 -12.77 -0.12 -7.17 16 14 C 0.48 6.99 7.52 -154.89 -1.16 5.82 16 15 N -0.67 -10.25 5.57 -60.05 -0.33 -10.59 16 16 C 0.11 1.79 5.72 -4.04 -0.02 1.77 16 17 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 18 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 19 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 20 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 23 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.18 1.66 7.72 -52.48 -0.41 1.26 16 33 H 0.12 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.43 6.69 5.17 -40.82 -0.21 6.48 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -36.15 384.65 -9.37 -45.51 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.08 Total: 1.24 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.39 Total: -4.73 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.14 Total: -50.67 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.27 Total: -24.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 12.95 SS G_CDS: -1.55 Total: 11.40 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.15 -9.37 -45.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.131 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds