Wall clock time and date at job start Tue Mar 31 2020 23:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47008 * 2 1 4 4 C 1.34758 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.21524 * 120.00250 * 0.02562 * 4 3 2 6 6 C 1.47304 * 120.00294 * 179.97438 * 4 3 2 7 7 C 1.39827 * 120.99430 * 354.69396 * 6 4 3 8 8 N 1.32190 * 118.98734 * 179.97438 * 7 6 4 9 9 C 1.31972 * 121.20475 * 0.02562 * 8 7 6 10 10 S 1.76199 * 118.87988 * 179.97438 * 9 8 7 11 11 C 1.81400 * 103.00086 * 90.00043 * 10 9 8 12 12 O 1.42097 * 103.00045 * 336.14795 * 10 9 8 13 13 N 1.31677 * 122.24554 * 359.73521 * 9 8 7 14 14 C 1.32987 * 120.84328 * 0.52996 * 13 9 8 15 15 N 1.37833 * 120.64324 * 179.75980 * 14 13 9 16 16 C 1.46900 * 110.99686 * 58.61486 * 15 14 13 17 17 C 1.52994 * 109.47427 * 75.54548 * 16 15 14 18 18 C 1.46900 * 111.00449 * 294.66010 * 15 14 13 19 19 C 1.50696 * 109.47389 * 190.00045 * 18 15 14 20 20 H 1.08006 * 119.99998 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00226 * 180.02562 * 19 18 15 22 22 N 1.31515 * 120.00176 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99786 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46530 * 90.00458 * 23 21 19 25 25 H 1.48492 * 109.47244 * 210.00098 * 23 21 19 26 26 H 1.48500 * 109.47282 * 330.00749 * 23 21 19 27 27 H 1.08995 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46517 * 299.99928 * 1 2 3 29 29 H 1.09006 * 109.47048 * 59.99518 * 1 2 3 30 30 H 1.09005 * 109.46872 * 240.00633 * 2 1 3 31 31 H 1.08992 * 109.47020 * 120.00378 * 2 1 3 32 32 H 1.07997 * 120.51031 * 359.97438 * 7 6 4 33 33 H 1.09005 * 109.47120 * 59.99716 * 11 10 9 34 34 H 1.08993 * 109.47585 * 179.97438 * 11 10 9 35 35 H 1.09003 * 109.46771 * 300.00245 * 11 10 9 36 36 H 1.09005 * 109.47093 * 195.54812 * 16 15 14 37 37 H 1.09002 * 109.47340 * 315.54479 * 16 15 14 38 38 H 1.09005 * 109.47252 * 64.88015 * 17 16 15 39 39 H 1.09000 * 109.47776 * 184.87465 * 17 16 15 40 40 H 1.08997 * 109.47417 * 304.88101 * 17 16 15 41 41 H 1.08998 * 109.46987 * 309.99943 * 18 15 14 42 42 H 1.09001 * 109.47247 * 69.99572 * 18 15 14 43 43 H 0.97001 * 119.99938 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5456 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9131 2.9067 0.0000 7 6 3.0855 4.0282 -0.1119 8 7 3.6331 5.2314 -0.1076 9 6 4.9391 5.3879 -0.0005 10 16 5.6037 7.0197 -0.0020 11 6 5.6057 7.4612 1.7574 12 8 4.6046 7.7711 -0.6777 13 7 5.7622 4.3662 0.1121 14 6 5.3036 3.1179 0.1119 15 7 6.1693 2.0514 0.2251 16 6 6.9470 2.1344 1.4686 17 6 6.0611 1.7389 2.6516 18 6 7.0541 1.9651 -0.9444 19 6 7.8104 0.6622 -0.9071 20 1 7.6503 -0.0322 -0.0954 21 6 8.7077 0.3569 -1.9084 22 7 9.3674 -0.7803 -1.8761 23 14 8.9853 1.5582 -3.3118 24 1 10.0829 2.4923 -2.9539 25 1 9.3540 0.8085 -4.5395 26 1 7.7399 2.3288 -3.5575 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0154 3.9133 -0.2005 33 1 6.2280 6.7559 2.3083 34 1 6.0040 8.4684 1.8789 35 1 4.5866 7.4241 2.1425 36 1 7.7990 1.4569 1.4102 37 1 7.3035 3.1551 1.6068 38 1 5.7754 0.6912 2.5573 39 1 6.6110 1.8832 3.5816 40 1 5.1657 2.3604 2.6587 41 1 6.4577 2.0129 -1.8555 42 1 7.7599 2.7955 -0.9282 43 1 9.9989 -0.9949 -2.5804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:47 Heat of formation + Delta-G solvation = -45.205825 kcal Electronic energy + Delta-G solvation = -28476.431566 eV Core-core repulsion = 24457.169806 eV Total energy + Delta-G solvation = -4019.261759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33953 -39.78609 -37.56883 -36.21860 -35.98343 -33.43517 -32.76187 -32.20098 -31.43013 -30.30362 -29.10161 -27.41748 -25.79946 -24.19308 -23.15003 -22.35745 -21.34429 -20.81310 -18.78541 -18.06707 -17.40153 -17.06249 -16.56677 -16.49879 -16.33466 -15.72941 -15.06646 -15.02733 -14.47035 -14.19507 -13.97106 -13.86189 -13.75589 -13.67322 -13.29945 -12.99534 -12.89566 -12.76200 -12.46663 -12.29921 -11.94206 -11.90332 -11.60387 -11.59982 -11.36333 -11.05187 -10.80722 -10.72706 -10.57250 -10.45499 -10.37470 -10.17132 -9.94546 -9.63840 -9.52209 -9.33894 -8.74932 -8.63448 -7.88736 -6.09844 -4.08078 0.03895 0.95986 1.36035 2.19075 2.61453 2.70356 3.25270 3.32908 3.34745 3.35473 3.67000 3.89273 4.21377 4.37439 4.57270 4.67095 4.87376 4.88925 4.91445 4.93150 5.04697 5.12279 5.22125 5.24320 5.57525 5.63253 5.67962 5.71553 5.72964 5.82497 5.84425 5.97127 6.16699 6.47183 6.49093 6.55271 6.71944 6.73764 6.83399 7.42775 7.52359 7.71741 7.82584 8.00698 8.53815 8.99180 9.49464 11.02671 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.006934 B = 0.005695 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.883340 B = 4915.417234 C = 7540.938990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.367 6.367 4 C 0.500 3.500 5 O -0.427 6.427 6 C -0.182 4.182 7 C 0.186 3.814 8 N -0.489 5.489 9 C 0.002 3.998 10 S 1.388 4.612 11 C -0.496 4.496 12 O -0.823 6.823 13 N -0.493 5.493 14 C 0.412 3.588 15 N -0.467 5.467 16 C 0.057 3.943 17 C -0.143 4.143 18 C 0.175 3.825 19 C -0.507 4.507 20 H 0.087 0.913 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.870 3.130 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.269 1.269 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.183 0.817 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.007 0.993 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 10.596 7.582 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.286 6.286 4 C 0.338 3.662 5 O -0.309 6.309 6 C -0.190 4.190 7 C 0.018 3.982 8 N -0.203 5.203 9 C -0.358 4.358 10 S 1.577 4.423 11 C -0.654 4.654 12 O -0.818 6.818 13 N -0.212 5.212 14 C 0.174 3.826 15 N -0.191 5.191 16 C -0.069 4.069 17 C -0.201 4.201 18 C 0.052 3.948 19 C -0.545 4.545 20 H 0.105 0.895 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.697 3.303 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.199 0.801 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.025 0.975 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.865 11.091 6.713 16.291 hybrid contribution -1.835 -0.143 -0.008 1.840 sum -11.700 10.948 6.705 17.370 Atomic orbital electron populations 1.21802 0.92831 1.02878 1.03291 1.22992 0.94905 0.79952 1.03028 1.86480 1.24072 1.32622 1.85421 1.20306 0.80696 0.89168 0.75986 1.91067 1.59222 1.40588 1.40012 1.20980 0.94871 0.93469 1.09685 1.23815 1.01168 0.86459 0.86808 1.68796 1.12954 1.25683 1.12913 1.33559 0.91163 1.14839 0.96268 1.70867 1.09420 0.76714 0.85344 1.27687 1.07713 1.09145 1.20881 1.93093 1.61135 1.63513 1.64038 1.68922 1.39448 0.99532 1.13273 1.20801 0.91044 0.88175 0.82592 1.60104 1.22079 1.31156 1.05782 1.22187 0.96777 1.01242 0.86711 1.21778 0.98820 1.02319 0.97206 1.20258 0.90016 0.98522 0.86015 1.20866 1.21014 1.01815 1.10781 0.89548 1.24810 0.95461 0.95124 0.97476 1.69874 1.26843 1.22563 1.34048 0.86954 0.79061 0.81675 0.82657 1.19773 1.21015 1.19427 0.90261 0.91656 0.91575 0.90940 0.91080 0.80056 0.86453 0.86765 0.89414 0.87483 0.93737 0.91572 0.92525 0.94872 0.95721 0.97520 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.76 6.20 37.16 0.23 0.99 16 3 O -0.37 -5.19 9.58 -40.65 -0.39 -5.58 16 4 C 0.50 8.69 7.89 34.42 0.27 8.96 16 5 O -0.43 -8.90 15.01 -19.28 -0.29 -9.19 16 6 C -0.18 -3.14 5.92 -104.54 -0.62 -3.76 16 7 C 0.19 2.80 10.89 -16.80 -0.18 2.62 16 8 N -0.49 -7.98 9.96 -13.47 -0.13 -8.11 16 9 C 0.00 0.03 7.36 -92.10 -0.68 -0.64 16 10 S 1.39 15.24 14.41 -107.50 -1.55 13.69 16 11 C -0.50 -4.16 10.70 101.05 1.08 -3.08 16 12 O -0.82 -13.38 17.55 -35.23 -0.62 -14.00 16 13 N -0.49 -8.27 9.48 -12.77 -0.12 -8.39 16 14 C 0.41 7.73 4.56 -154.90 -0.71 7.03 16 15 N -0.47 -9.78 2.54 -174.13 -0.44 -10.23 16 16 C 0.06 1.05 5.49 -3.83 -0.02 1.03 16 17 C -0.14 -2.28 10.07 37.15 0.37 -1.90 16 18 C 0.18 4.20 3.61 -4.98 -0.02 4.18 16 19 C -0.51 -13.95 8.79 -34.44 -0.30 -14.26 16 20 H 0.09 2.60 7.55 -52.48 -0.40 2.20 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 23 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.18 2.15 7.72 -52.49 -0.40 1.74 16 33 H 0.12 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.11 2.17 6.58 -51.93 -0.34 1.83 16 37 H 0.04 0.74 7.42 -51.93 -0.39 0.36 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.51 7.59 -51.93 -0.39 0.12 16 41 H 0.02 0.63 7.11 -51.93 -0.37 0.26 16 42 H 0.01 0.16 7.55 -51.93 -0.39 -0.23 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -37.01 379.19 -8.09 -45.10 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.08 Total: -1.69 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.29 Total: 2.28 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.08 Total: -52.65 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.30 Total: -28.76 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 15.24 SS G_CDS: -1.55 Total: 13.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.01 -8.09 -45.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.103 kcal (2) G-P(sol) polarization free energy of solvation -37.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds