Wall clock time and date at job start Tue Mar 31 2020 23:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47211 * 2 1 4 4 C 1.34759 * 116.99887 * 180.02562 * 3 2 1 5 5 O 1.21512 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.47307 * 119.99784 * 180.02562 * 4 3 2 7 7 C 1.39831 * 120.99964 * 5.17863 * 6 4 3 8 8 N 1.32193 * 118.98891 * 180.02562 * 7 6 4 9 9 C 1.31976 * 121.19931 * 0.02562 * 8 7 6 10 10 S 1.76202 * 118.87359 * 179.97438 * 9 8 7 11 11 C 1.81400 * 103.00090 * 89.99486 * 10 9 8 12 12 O 1.42105 * 103.00088 * 203.85039 * 10 9 8 13 13 N 1.31663 * 122.24963 * 359.73373 * 9 8 7 14 14 C 1.32987 * 120.84814 * 0.53321 * 13 9 8 15 15 N 1.37838 * 120.64682 * 179.76708 * 14 13 9 16 16 C 1.46897 * 111.00105 * 58.35925 * 15 14 13 17 17 C 1.53001 * 109.46953 * 75.55897 * 16 15 14 18 18 C 1.46901 * 110.99271 * 294.40450 * 15 14 13 19 19 C 1.50700 * 109.46832 * 189.99853 * 18 15 14 20 20 H 1.08004 * 120.00317 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00403 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99543 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00492 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46802 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46876 * 120.00394 * 23 21 19 26 26 H 1.48500 * 109.47131 * 240.00212 * 23 21 19 27 27 H 1.08998 * 109.47577 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47121 * 300.00191 * 1 2 3 29 29 H 1.09003 * 109.47170 * 59.99735 * 1 2 3 30 30 H 1.09000 * 109.46645 * 240.00412 * 2 1 3 31 31 H 1.08995 * 109.47226 * 120.00551 * 2 1 3 32 32 H 1.08001 * 120.50526 * 0.02562 * 7 6 4 33 33 H 1.09005 * 109.46811 * 60.00272 * 11 10 9 34 34 H 1.08999 * 109.46947 * 179.97438 * 11 10 9 35 35 H 1.08988 * 109.47345 * 300.00197 * 11 10 9 36 36 H 1.08998 * 109.46985 * 195.55973 * 16 15 14 37 37 H 1.08997 * 109.47122 * 315.55354 * 16 15 14 38 38 H 1.08996 * 109.47189 * 294.95884 * 17 16 15 39 39 H 1.09001 * 109.46931 * 54.95780 * 17 16 15 40 40 H 1.08994 * 109.46908 * 174.95576 * 17 16 15 41 41 H 1.08994 * 109.47652 * 310.00015 * 18 15 14 42 42 H 1.09002 * 109.47016 * 70.00689 * 18 15 14 43 43 H 0.97001 * 120.00301 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0902 0.5818 -0.0005 6 6 3.9130 2.9067 0.0000 7 6 3.0853 4.0284 0.1092 8 7 3.6328 5.2315 0.1050 9 6 4.9391 5.3878 -0.0005 10 16 5.6035 7.0197 -0.0004 11 6 5.9068 7.3367 1.7598 12 8 6.8447 6.8597 -0.6736 13 7 5.7630 4.3658 -0.1013 14 6 5.3036 3.1179 -0.1113 15 7 6.1696 2.0512 -0.2218 16 6 7.1513 2.0547 0.8710 17 6 6.4811 1.5749 2.1601 18 6 6.8379 2.0492 -1.5299 19 6 7.5817 0.7513 -1.7120 20 1 7.5598 0.0025 -0.9339 21 6 8.2903 0.5195 -2.8718 22 7 8.3175 1.4315 -3.8191 23 14 9.2117 -1.0896 -3.0978 24 1 9.0232 -1.9409 -1.8958 25 1 8.6857 -1.7975 -4.2927 26 1 10.6580 -0.8098 -3.2850 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0149 3.9135 0.1958 33 1 6.6094 6.5982 2.1461 34 1 6.3260 8.3354 1.8822 35 1 4.9678 7.2666 2.3087 36 1 7.9762 1.3878 0.6205 37 1 7.5321 3.0659 1.0141 38 1 5.7150 2.2901 2.4592 39 1 6.0223 0.6008 1.9902 40 1 7.2286 1.4919 2.9490 41 1 6.0932 2.1549 -2.3187 42 1 7.5409 2.8808 -1.5800 43 1 8.8156 1.2684 -4.6353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:50 Heat of formation + Delta-G solvation = -49.802794 kcal Electronic energy + Delta-G solvation = -28513.040493 eV Core-core repulsion = 24493.579394 eV Total energy + Delta-G solvation = -4019.461099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19834 -39.71682 -37.37095 -36.15197 -35.83476 -33.30396 -32.75441 -32.14800 -31.37298 -29.98054 -29.00368 -26.88639 -25.67806 -24.07089 -23.09653 -22.56531 -21.29565 -20.88288 -18.45623 -18.03363 -17.39655 -16.66393 -16.45286 -16.29866 -16.26438 -15.59430 -15.02693 -14.83861 -14.33990 -14.28227 -13.88120 -13.79568 -13.65650 -13.61437 -13.14654 -12.91689 -12.85672 -12.48488 -12.23124 -12.15779 -11.90268 -11.80979 -11.54505 -11.45855 -11.11045 -10.89722 -10.72001 -10.61033 -10.45168 -10.41137 -10.40103 -10.07928 -10.03242 -9.53672 -9.44114 -9.17274 -8.69133 -8.47755 -7.65949 -6.03840 -4.06022 0.16747 1.10345 1.50181 2.30516 2.65669 2.81966 3.31661 3.38192 3.43970 3.50643 3.79082 4.06283 4.32714 4.46012 4.67596 4.78061 4.89497 4.95770 5.01457 5.05178 5.12418 5.22561 5.28661 5.31913 5.62987 5.68087 5.70709 5.80111 5.82248 5.85380 5.93493 6.09706 6.26406 6.52837 6.58443 6.70554 6.89557 7.10204 7.26022 7.71979 7.78598 7.89590 8.03463 8.08155 8.40120 8.99973 9.56924 11.07233 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007199 B = 0.005404 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3888.588050 B = 5179.849487 C = 7952.539495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 O -0.366 6.366 4 C 0.504 3.496 5 O -0.434 6.434 6 C -0.188 4.188 7 C 0.185 3.815 8 N -0.485 5.485 9 C 0.000 4.000 10 S 1.385 4.615 11 C -0.498 4.498 12 O -0.813 6.813 13 N -0.495 5.495 14 C 0.416 3.584 15 N -0.477 5.477 16 C 0.060 3.940 17 C -0.143 4.143 18 C 0.206 3.794 19 C -0.505 4.505 20 H 0.069 0.931 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.186 0.814 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.025 0.975 42 H 0.013 0.987 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.656 9.078 11.851 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.285 6.285 4 C 0.343 3.657 5 O -0.316 6.316 6 C -0.196 4.196 7 C 0.017 3.983 8 N -0.200 5.200 9 C -0.361 4.361 10 S 1.573 4.427 11 C -0.656 4.656 12 O -0.807 6.807 13 N -0.213 5.213 14 C 0.178 3.822 15 N -0.201 5.201 16 C -0.067 4.067 17 C -0.201 4.201 18 C 0.084 3.916 19 C -0.544 4.544 20 H 0.087 0.913 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.730 3.270 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.031 0.969 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.013 9.745 10.914 21.691 hybrid contribution 1.846 -2.794 0.491 3.385 sum -14.167 6.951 11.405 19.470 Atomic orbital electron populations 1.21795 0.92815 1.02820 1.03327 1.22969 0.94915 0.80117 1.02887 1.86476 1.24107 1.32454 1.85447 1.20315 0.80568 0.89218 0.75642 1.91011 1.59343 1.40802 1.40456 1.20948 0.94884 0.93495 1.10272 1.23756 1.00956 0.86442 0.87166 1.68424 1.12037 1.25473 1.14053 1.33640 0.91722 1.14523 0.96173 1.70505 1.00066 0.86860 0.85262 1.27708 1.08705 1.07895 1.21308 1.93200 1.45038 1.78674 1.63768 1.69310 1.40140 0.99835 1.11979 1.20926 0.91161 0.88359 0.81742 1.60351 1.20884 1.31645 1.07242 1.22089 0.94609 1.00729 0.89247 1.21793 0.99759 1.01846 0.96661 1.19831 0.92731 0.98271 0.80794 1.21072 1.29293 1.01231 1.02811 0.91265 1.24996 0.96685 0.97175 0.95695 1.69994 1.42131 1.34010 1.07302 0.86364 0.79234 0.83206 0.78184 1.19528 1.20977 1.21009 0.90378 0.91635 0.91493 0.90990 0.91286 0.79705 0.89413 0.86929 0.86703 0.88159 0.94318 0.95020 0.91252 0.92735 0.95686 0.96942 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.75 6.20 37.16 0.23 0.98 16 3 O -0.37 -5.12 9.58 -40.65 -0.39 -5.51 16 4 C 0.50 8.95 7.89 34.42 0.27 9.22 16 5 O -0.43 -9.22 15.00 -19.27 -0.29 -9.51 16 6 C -0.19 -3.36 5.92 -104.53 -0.62 -3.98 16 7 C 0.19 2.56 10.89 -16.80 -0.18 2.37 16 8 N -0.48 -6.63 10.33 -13.47 -0.14 -6.77 16 9 C 0.00 0.00 7.36 -92.11 -0.68 -0.68 16 10 S 1.39 16.21 14.41 -107.50 -1.55 14.67 16 11 C -0.50 -4.52 10.70 101.05 1.08 -3.44 16 12 O -0.81 -15.55 17.56 -35.23 -0.62 -16.17 16 13 N -0.49 -10.35 9.11 -12.77 -0.12 -10.46 16 14 C 0.42 8.90 4.70 -154.89 -0.73 8.18 16 15 N -0.48 -11.38 2.54 -174.13 -0.44 -11.83 16 16 C 0.06 1.29 5.49 -3.82 -0.02 1.27 16 17 C -0.14 -2.55 9.95 37.16 0.37 -2.18 16 18 C 0.21 5.85 4.55 -4.98 -0.02 5.83 16 19 C -0.51 -14.89 8.23 -34.44 -0.28 -15.17 16 20 H 0.07 2.02 7.31 -52.48 -0.38 1.63 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -27.90 13.29 55.43 0.74 -27.16 16 23 Si 0.90 22.50 29.54 -169.99 -5.02 17.47 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.19 1.79 7.72 -52.49 -0.40 1.38 16 33 H 0.09 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.11 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 2.30 6.58 -51.93 -0.34 1.96 16 37 H 0.04 0.85 7.41 -51.93 -0.38 0.47 16 38 H 0.03 0.54 7.83 -51.93 -0.41 0.13 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 42 H 0.01 0.40 8.12 -51.93 -0.42 -0.03 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -40.35 383.05 -8.48 -48.82 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.12 Total: -2.50 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.30 Total: 3.16 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.04 Total: -56.22 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.30 Total: -31.18 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 16.21 SS G_CDS: -1.55 Total: 14.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.35 -8.48 -48.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.980 kcal (2) G-P(sol) polarization free energy of solvation -40.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds