Wall clock time and date at job start Tue Mar 31 2020 23:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47010 * 2 1 4 4 C 1.34694 * 116.99794 * 179.97438 * 3 2 1 5 5 O 1.21429 * 120.00388 * 359.97438 * 4 3 2 6 6 C 1.47986 * 119.99325 * 179.97438 * 4 3 2 7 7 N 1.33238 * 120.62015 * 4.76752 * 6 4 3 8 8 C 1.31407 * 120.81522 * 180.02562 * 7 6 4 9 9 N 1.32024 * 122.15811 * 359.74035 * 8 7 6 10 10 C 1.31968 * 121.14917 * 0.53102 * 9 8 7 11 11 C 1.39748 * 119.03693 * 359.48260 * 10 9 8 12 12 N 1.39162 * 120.96275 * 180.23015 * 11 10 9 13 13 C 1.34780 * 119.99639 * 325.32203 * 12 11 10 14 14 O 1.21540 * 120.00098 * 5.35899 * 13 12 11 15 15 C 1.47839 * 119.99363 * 185.35344 * 13 12 11 16 16 C 1.39937 * 120.03264 * 359.72393 * 15 13 12 17 17 C 1.38329 * 120.35938 * 179.76293 * 16 15 13 18 18 C 1.37747 * 120.41223 * 0.51692 * 17 16 15 19 19 C 1.40758 * 120.04742 * 359.74421 * 18 17 16 20 20 C 1.41436 * 120.18179 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00292 * 140.52346 * 20 19 18 22 22 C 1.39940 * 119.99517 * 320.52536 * 20 19 18 23 23 N 1.30824 * 119.99545 * 176.10241 * 22 20 19 24 24 Si 1.86797 * 120.00187 * 356.10234 * 22 20 19 25 25 H 1.48501 * 109.47121 * 90.02336 * 24 22 20 26 26 H 1.48500 * 109.47093 * 210.02342 * 24 22 20 27 27 H 1.48498 * 109.47008 * 330.02151 * 24 22 20 28 28 C 1.39024 * 120.02590 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.46771 * 60.00913 * 1 2 3 30 30 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47932 * 300.00171 * 1 2 3 32 32 H 1.08994 * 109.47932 * 239.99829 * 2 1 3 33 33 H 1.09006 * 109.46750 * 119.99451 * 2 1 3 34 34 H 1.08000 * 118.92154 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.47844 * 179.76530 * 10 9 8 36 36 H 0.96994 * 120.00058 * 145.31969 * 12 11 10 37 37 H 1.08007 * 119.81978 * 0.02562 * 16 15 13 38 38 H 1.07999 * 119.78864 * 180.26316 * 17 16 15 39 39 H 1.07998 * 119.97993 * 179.76257 * 18 17 16 40 40 H 0.97003 * 120.00103 * 179.97438 * 23 22 20 41 41 H 1.08003 * 120.20182 * 359.95810 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0891 0.5825 0.0015 6 6 3.9148 2.9130 0.0000 7 7 3.1182 3.9769 0.0943 8 6 3.6162 5.1929 0.0937 9 7 4.9136 5.4209 0.0060 10 6 5.7759 4.4272 -0.0963 11 6 5.2996 3.1134 -0.1003 12 7 6.1736 2.0352 -0.2015 13 6 7.2889 2.1399 -0.9510 14 8 7.5819 3.2045 -1.4591 15 6 8.1557 0.9599 -1.1550 16 6 7.8220 -0.2646 -0.5654 17 6 8.6256 -1.3743 -0.7558 18 6 9.7690 -1.2846 -1.5188 19 6 10.1240 -0.0602 -2.1153 20 6 11.2970 0.0350 -2.8998 21 1 11.2950 0.6240 -3.8050 22 6 12.4602 -0.6342 -2.5029 23 7 13.5221 -0.6090 -3.2666 24 14 12.4966 -1.5633 -0.8828 25 1 12.0643 -2.9662 -1.1069 26 1 13.8775 -1.5521 -0.3366 27 1 11.5770 -0.9102 0.0831 28 6 9.3066 1.0672 -1.9275 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9423 6.0333 0.1720 35 1 6.8348 4.6263 -0.1712 36 1 5.9801 1.2085 0.2673 37 1 6.9298 -0.3447 0.0380 38 1 8.3570 -2.3158 -0.3000 39 1 10.3933 -2.1545 -1.6597 40 1 14.3285 -1.0726 -2.9914 41 1 9.5704 2.0113 -2.3810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188666132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:37 Heat of formation + Delta-G solvation = -40.518128 kcal Electronic energy + Delta-G solvation = -28396.189017 eV Core-core repulsion = 24241.686580 eV Total energy + Delta-G solvation = -4154.502437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88726 -40.39152 -39.77808 -37.65189 -37.10841 -35.23336 -34.22814 -33.70698 -32.04540 -31.49504 -30.37469 -29.93975 -26.48668 -25.52923 -24.86622 -23.60378 -22.83887 -21.97285 -20.88508 -20.44444 -19.08550 -18.53788 -17.79805 -17.45344 -17.08800 -16.93967 -16.39418 -15.77587 -15.59996 -15.15329 -14.80125 -14.61913 -14.27975 -14.20328 -13.94208 -13.81154 -13.77885 -13.14263 -12.96459 -12.86805 -12.36099 -12.22547 -12.01473 -11.90172 -11.70748 -11.38891 -11.25785 -11.15461 -11.14205 -10.88346 -10.80620 -10.65665 -10.11451 -9.90439 -9.86523 -9.53606 -9.28298 -8.75892 -8.04451 -7.82611 -6.94565 -4.63426 -0.01833 0.60398 1.62914 2.03147 2.09124 2.38432 2.84353 3.01014 3.12321 3.16542 3.24526 3.51494 3.58079 3.89751 3.90695 4.11163 4.35126 4.42890 4.58730 4.60426 4.67893 4.92260 5.09786 5.16667 5.27728 5.42636 5.43863 5.59128 5.71778 5.79300 5.88013 5.98452 6.18871 6.20712 6.44355 6.48346 6.53392 6.85897 7.04611 7.18725 7.23562 7.31358 7.37169 7.63492 7.69195 7.78272 8.13340 8.23922 8.41277 8.67069 10.08087 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.002878 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.078156 B = 9727.485869 C =11186.691511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.329 6.329 4 C 0.531 3.469 5 O -0.491 6.491 6 C 0.091 3.909 7 N -0.452 5.452 8 C 0.260 3.740 9 N -0.475 5.475 10 C 0.151 3.849 11 C 0.131 3.869 12 N -0.655 5.655 13 C 0.568 3.432 14 O -0.522 6.522 15 C -0.118 4.118 16 C -0.197 4.197 17 C -0.089 4.089 18 C -0.201 4.201 19 C 0.080 3.920 20 C -0.450 4.450 21 H 0.095 0.905 22 C 0.081 3.919 23 N -0.818 5.818 24 Si 0.906 3.094 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.243 1.243 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.206 0.794 35 H 0.197 0.803 36 H 0.428 0.572 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.286 0.714 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 2.580 9.196 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.244 6.244 4 C 0.373 3.627 5 O -0.377 6.377 6 C -0.057 4.057 7 N -0.168 5.168 8 C -0.029 4.029 9 N -0.189 5.189 10 C -0.022 4.022 11 C 0.026 3.974 12 N -0.306 5.306 13 C 0.362 3.638 14 O -0.398 6.398 15 C -0.121 4.121 16 C -0.216 4.216 17 C -0.107 4.107 18 C -0.220 4.220 19 C 0.077 3.923 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.136 4.136 23 N -0.443 5.443 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.166 1.166 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.213 0.787 36 H 0.273 0.727 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.394 3.576 8.787 22.493 hybrid contribution 0.564 -1.775 0.730 2.001 sum -19.831 1.800 9.517 22.070 Atomic orbital electron populations 1.21801 0.92204 1.03089 1.03765 1.23198 0.95728 0.79519 1.03112 1.86660 1.22188 1.32560 1.83042 1.20460 0.81500 0.87663 0.73032 1.90776 1.60260 1.41165 1.45539 1.20179 0.88298 0.91983 1.05204 1.68338 1.39055 0.99167 1.10192 1.24937 0.90185 0.93190 0.94594 1.68394 1.04333 1.36103 1.10045 1.23945 1.01916 0.85290 0.91079 1.19575 0.89394 0.91555 0.96896 1.43867 1.21885 1.15763 1.49038 1.19150 0.79261 0.89489 0.75942 1.90702 1.71380 1.29249 1.48511 1.19209 0.96814 0.91666 1.04454 1.20551 1.01549 0.92942 1.06601 1.20561 0.95017 0.96992 0.98133 1.21367 0.98266 0.97395 1.04999 1.17752 0.93303 0.90073 0.91135 1.19446 0.93180 1.26761 1.08513 0.88737 1.26058 0.95002 0.93856 0.98658 1.69600 1.03058 1.35002 1.36610 0.86390 0.77417 0.80205 0.82682 1.19492 1.21661 1.16590 1.21432 0.94376 0.98447 0.99747 0.91297 0.90003 0.91328 0.90689 0.90771 0.77720 0.78665 0.72678 0.87943 0.87801 0.87524 0.90388 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.33 -3.80 10.08 -40.48 -0.41 -4.20 16 4 C 0.53 6.96 7.95 34.73 0.28 7.23 16 5 O -0.49 -6.94 13.84 -19.21 -0.27 -7.20 16 6 C 0.09 1.22 6.81 -82.50 -0.56 0.66 16 7 N -0.45 -5.55 10.25 -11.07 -0.11 -5.66 16 8 C 0.26 2.78 12.26 -92.29 -1.13 1.65 16 9 N -0.48 -5.96 10.41 -14.40 -0.15 -6.11 16 10 C 0.15 2.09 9.99 -16.93 -0.17 1.92 16 11 C 0.13 1.87 6.35 -83.20 -0.53 1.34 16 12 N -0.66 -10.04 4.68 -10.34 -0.05 -10.09 16 13 C 0.57 10.38 7.64 -12.33 -0.09 10.29 16 14 O -0.52 -10.30 13.79 5.33 0.07 -10.23 16 15 C -0.12 -2.38 5.87 -105.04 -0.62 -3.00 16 16 C -0.20 -3.68 9.55 -38.91 -0.37 -4.05 16 17 C -0.09 -1.73 10.01 -39.73 -0.40 -2.13 16 18 C -0.20 -4.46 6.86 -38.81 -0.27 -4.73 16 19 C 0.08 1.93 5.01 -106.87 -0.53 1.40 16 20 C -0.45 -11.76 9.60 -37.73 -0.36 -12.12 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 22 C 0.08 2.08 5.51 -17.34 -0.10 1.98 16 23 N -0.82 -21.48 13.93 55.55 0.77 -20.71 16 24 Si 0.91 19.84 24.48 -169.99 -4.16 15.68 16 25 H -0.27 -5.64 6.77 56.52 0.38 -5.26 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.24 -5.36 6.54 56.52 0.37 -4.99 16 28 C -0.12 -2.71 9.34 -38.43 -0.36 -3.07 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.21 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.20 2.79 6.29 -52.48 -0.33 2.46 16 36 H 0.43 6.21 4.48 -40.82 -0.18 6.03 16 37 H 0.10 1.64 6.39 -52.48 -0.34 1.30 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.11 2.34 4.91 -52.49 -0.26 2.08 16 40 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.12 2.74 7.64 -52.48 -0.40 2.34 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -28.66 353.97 -7.64 -36.30 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.07 Total: 9.31 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.60 Total: -2.42 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.46 Total: -42.57 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.60 Total: -21.64 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.16 Total: 15.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.66 -7.64 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.218 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds