Wall clock time and date at job start Tue Mar 31 2020 23:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47354 * 2 1 4 4 C 1.34676 * 117.00178 * 180.02562 * 3 2 1 5 5 O 1.21426 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.48167 * 120.00324 * 179.97438 * 4 3 2 7 7 N 1.32592 * 119.09267 * 359.72132 * 6 4 3 8 8 C 1.31906 * 120.85634 * 179.75610 * 7 6 4 9 9 C 1.39643 * 119.05890 * 0.51390 * 8 7 6 10 10 N 1.39349 * 120.81883 * 179.76784 * 9 8 7 11 11 C 1.34774 * 119.99597 * 205.74252 * 10 9 8 12 12 O 1.21552 * 120.00411 * 5.74087 * 11 10 9 13 13 C 1.47847 * 120.00164 * 185.73423 * 11 10 9 14 14 C 1.39943 * 120.02497 * 359.73029 * 13 11 10 15 15 C 1.38328 * 120.35691 * 179.69269 * 14 13 11 16 16 C 1.37757 * 120.41135 * 0.60379 * 15 14 13 17 17 C 1.40759 * 120.04401 * 359.67273 * 16 15 14 18 18 C 1.41435 * 120.17752 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99634 * 34.85159 * 18 17 16 20 20 C 1.39932 * 120.00530 * 214.84790 * 18 17 16 21 21 N 1.30830 * 119.99542 * 355.30319 * 20 18 17 22 22 Si 1.86803 * 120.00262 * 175.29786 * 20 18 17 23 23 H 1.48494 * 109.46642 * 60.00214 * 22 20 18 24 24 H 1.48495 * 109.46963 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46866 * 300.00075 * 22 20 18 26 26 C 1.39011 * 120.03071 * 180.02562 * 13 11 10 27 27 C 1.39633 * 118.35207 * 359.74516 * 9 8 7 28 28 N 1.31904 * 119.06577 * 0.02562 * 27 9 8 29 29 H 1.08999 * 109.46904 * 300.00657 * 1 2 3 30 30 H 1.09005 * 109.46966 * 59.99887 * 1 2 3 31 31 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47192 * 239.99782 * 2 1 3 33 33 H 1.09004 * 109.46535 * 119.99795 * 2 1 3 34 34 H 1.07991 * 120.47279 * 180.23712 * 8 7 6 35 35 H 0.96996 * 120.00167 * 25.74687 * 10 9 8 36 36 H 1.07999 * 119.81655 * 359.97438 * 14 13 11 37 37 H 1.07997 * 119.79193 * 180.28023 * 15 14 13 38 38 H 1.07996 * 119.97567 * 179.70230 * 16 15 14 39 39 H 0.97001 * 119.99655 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.20263 * 359.97438 * 26 13 11 41 41 H 1.07997 * 120.46001 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3492 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9157 2.9145 -0.0011 7 7 3.0915 3.9532 -0.0068 8 6 3.5580 5.1870 -0.0027 9 6 4.9396 5.3897 -0.0032 10 7 5.4722 6.6774 -0.0039 11 6 6.7011 6.8981 -0.5113 12 8 7.3021 5.9965 -1.0621 13 6 7.3182 8.2368 -0.3982 14 6 6.6244 9.2768 0.2307 15 6 7.1978 10.5303 0.3459 16 6 8.4529 10.7730 -0.1677 17 6 9.1636 9.7409 -0.8087 18 6 10.4525 9.9867 -1.3366 19 1 11.1212 10.6691 -0.8328 20 6 10.8615 9.3458 -2.5113 21 7 10.0889 8.4506 -3.0710 22 14 12.5106 9.7684 -3.2804 23 1 13.5980 9.4729 -2.3133 24 1 12.7061 8.9575 -4.5089 25 1 12.5381 11.2113 -3.6307 26 6 8.5855 8.4652 -0.9218 27 6 5.7741 4.2702 -0.0026 28 7 5.2327 3.0674 -0.0021 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8810 6.0284 -0.0035 35 1 4.9585 7.4149 0.3610 36 1 5.6378 9.0985 0.6322 37 1 6.6561 11.3251 0.8370 38 1 8.8919 11.7556 -0.0780 39 1 10.3722 8.0066 -3.8856 40 1 9.1229 7.6667 -1.4119 41 1 6.8476 4.3876 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188666146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:19 Heat of formation + Delta-G solvation = -41.319234 kcal Electronic energy + Delta-G solvation = -27434.914778 eV Core-core repulsion = 23280.377603 eV Total energy + Delta-G solvation = -4154.537175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65255 -40.40852 -39.51676 -37.38573 -36.79906 -35.31153 -34.01133 -33.82703 -32.12102 -31.28875 -29.88946 -29.63375 -26.14312 -25.37416 -25.03052 -23.59492 -22.74141 -21.68058 -21.12095 -20.22808 -18.87564 -18.40947 -17.59973 -17.51302 -16.90387 -16.86080 -16.07402 -15.45645 -15.40757 -15.09854 -14.82252 -14.51591 -14.27611 -13.98905 -13.78213 -13.68916 -13.41327 -13.09334 -12.94058 -12.74532 -12.23008 -12.03451 -11.90566 -11.85710 -11.36352 -11.27804 -11.17822 -11.11335 -10.93614 -10.84859 -10.78121 -10.62233 -10.27850 -9.94406 -9.69149 -9.42008 -9.29676 -8.59400 -7.89841 -7.60922 -6.80190 -4.61789 0.14132 0.87866 1.77581 2.05058 2.18057 2.65181 2.89742 3.01297 3.02776 3.04510 3.38767 3.67400 3.73060 3.85358 4.10360 4.26037 4.50020 4.56700 4.63472 4.66294 4.74344 4.96600 5.24381 5.32528 5.34706 5.47146 5.59167 5.65788 5.74371 5.83775 6.00288 6.08894 6.31712 6.47690 6.64749 6.72607 6.81002 7.08418 7.14557 7.24362 7.37746 7.45064 7.59559 7.79310 7.80429 7.99364 8.27813 8.32987 8.64267 8.69911 10.10673 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002088 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.723870 B =13404.782832 C =14466.461728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.335 6.335 4 C 0.545 3.455 5 O -0.475 6.475 6 C 0.244 3.756 7 N -0.443 5.443 8 C 0.102 3.898 9 C 0.104 3.896 10 N -0.660 5.660 11 C 0.566 3.434 12 O -0.511 6.511 13 C -0.140 4.140 14 C -0.206 4.206 15 C -0.103 4.103 16 C -0.193 4.193 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.081 0.919 20 C 0.069 3.931 21 N -0.801 5.801 22 Si 0.919 3.081 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.073 4.073 27 C 0.131 3.869 28 N -0.435 5.435 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.419 0.581 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.284 0.716 40 H 0.147 0.853 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.994 -7.067 5.602 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.250 6.250 4 C 0.384 3.616 5 O -0.358 6.358 6 C -0.023 4.023 7 N -0.158 5.158 8 C -0.069 4.069 9 C 0.000 4.000 10 N -0.305 5.305 11 C 0.360 3.640 12 O -0.386 6.386 13 C -0.144 4.144 14 C -0.226 4.226 15 C -0.121 4.121 16 C -0.213 4.213 17 C 0.090 3.910 18 C -0.491 4.491 19 H 0.099 0.901 20 C -0.149 4.149 21 N -0.427 5.427 22 Si 0.744 3.256 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.093 4.093 27 C -0.040 4.040 28 N -0.151 5.151 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.258 0.742 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.165 0.835 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.689 -9.125 4.978 17.995 hybrid contribution 0.697 1.451 -0.325 1.642 sum -13.992 -7.673 4.653 16.623 Atomic orbital electron populations 1.21800 0.92260 1.02959 1.03814 1.23138 0.95607 0.79702 1.02879 1.86634 1.22351 1.32311 1.83690 1.19774 0.81075 0.86992 0.73769 1.90875 1.60580 1.40726 1.43620 1.21091 0.86589 0.91298 1.03312 1.68230 1.39553 0.98753 1.09303 1.23116 0.91394 0.95009 0.97428 1.20077 0.95074 0.88150 0.96747 1.43635 1.19255 1.06965 1.60648 1.19240 0.79021 0.90006 0.75742 1.90722 1.61534 1.45462 1.40927 1.19310 0.97700 0.90377 1.06968 1.20393 0.99275 0.94265 1.08676 1.20474 0.95882 0.95549 1.00230 1.21328 0.95044 0.98168 1.06726 1.17661 0.93349 0.89960 0.89982 1.19528 0.99132 1.23238 1.07194 0.90120 1.25950 0.98702 0.93135 0.97067 1.69676 1.36220 1.19216 1.17595 0.86172 0.81240 0.79459 0.78742 1.18855 1.20230 1.18976 1.21998 0.92623 0.98333 0.96366 1.23866 1.02478 0.84465 0.93170 1.68125 1.11805 1.26287 1.08905 0.91305 0.91289 0.90114 0.90935 0.90948 0.80190 0.74182 0.89010 0.88443 0.88173 0.90429 0.83518 0.78447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.33 -4.16 10.01 -40.43 -0.40 -4.56 16 4 C 0.54 8.12 7.98 34.81 0.28 8.40 16 5 O -0.47 -7.97 16.65 -19.21 -0.32 -8.29 16 6 C 0.24 3.77 7.58 -157.02 -1.19 2.58 16 7 N -0.44 -6.04 10.14 -11.01 -0.11 -6.15 16 8 C 0.10 1.17 11.24 -17.00 -0.19 0.98 16 9 C 0.10 1.41 6.46 -83.40 -0.54 0.87 16 10 N -0.66 -8.95 5.30 -10.48 -0.06 -9.00 16 11 C 0.57 10.44 7.58 -12.33 -0.09 10.35 16 12 O -0.51 -10.91 13.61 5.32 0.07 -10.84 16 13 C -0.14 -2.87 5.87 -105.04 -0.62 -3.48 16 14 C -0.21 -3.67 9.55 -38.91 -0.37 -4.04 16 15 C -0.10 -1.92 10.01 -39.72 -0.40 -2.32 16 16 C -0.19 -4.12 9.78 -38.81 -0.38 -4.50 16 17 C 0.09 2.25 5.55 -106.87 -0.59 1.66 16 18 C -0.46 -11.34 9.04 -37.73 -0.34 -11.69 16 19 H 0.08 1.88 7.85 -52.48 -0.41 1.47 16 20 C 0.07 1.64 5.42 -17.34 -0.09 1.55 16 21 N -0.80 -20.14 10.60 55.55 0.59 -19.55 16 22 Si 0.92 18.09 29.56 -169.99 -5.03 13.07 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 26 C -0.07 -1.76 8.21 -38.44 -0.32 -2.07 16 27 C 0.13 2.07 9.97 -17.00 -0.17 1.90 16 28 N -0.44 -7.27 10.11 -11.01 -0.11 -7.38 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.42 4.32 6.83 -40.82 -0.28 4.04 16 36 H 0.09 1.24 6.39 -52.49 -0.34 0.91 16 37 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.15 3.88 5.72 -52.49 -0.30 3.58 16 41 H 0.20 3.33 5.98 -52.49 -0.31 3.01 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -29.67 363.99 -8.44 -38.11 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.16 Total: 8.70 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -4.40 Total: 0.42 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.31 Total: -42.09 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.65 Total: -23.70 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.67 -8.44 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.208 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds