Wall clock time and date at job start Tue Mar 31 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 110.99715 * 2 1 4 4 C 1.53039 * 109.52614 * 185.83826 * 3 2 1 5 5 C 1.53124 * 109.27670 * 300.82555 * 4 3 2 6 6 O 1.42901 * 109.52108 * 177.55967 * 5 4 3 7 7 C 1.36020 * 117.00063 * 155.19117 * 6 5 4 8 8 C 1.39258 * 120.38787 * 5.49183 * 7 6 5 9 9 C 1.38302 * 118.46196 * 179.97438 * 8 7 6 10 10 C 1.39087 * 119.15173 * 0.02562 * 9 8 7 11 11 N 1.39253 * 119.64800 * 179.97438 * 10 9 8 12 12 S 1.65597 * 120.00098 * 179.97438 * 11 10 9 13 13 O 1.42095 * 106.40284 * 178.54025 * 12 11 10 14 14 O 1.42104 * 106.40181 * 311.45481 * 12 11 10 15 15 C 1.76193 * 107.22195 * 64.99651 * 12 11 10 16 16 H 1.08007 * 119.99624 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00605 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00731 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 119.99563 * 359.97438 * 17 15 12 20 20 H 1.48508 * 109.46782 * 90.00368 * 19 17 15 21 21 H 1.48499 * 109.46949 * 209.99946 * 19 17 15 22 22 H 1.48492 * 109.47273 * 330.00239 * 19 17 15 23 23 N 1.32336 * 120.70731 * 0.02562 * 10 9 8 24 24 C 1.32003 * 121.67345 * 359.97438 * 23 10 9 25 25 C 1.53116 * 109.21450 * 57.61724 * 5 4 3 26 26 C 1.46848 * 111.00331 * 124.20710 * 2 1 3 27 27 H 1.09004 * 109.47005 * 60.00288 * 1 2 3 28 28 H 1.09000 * 109.46793 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47304 * 299.99618 * 1 2 3 30 30 H 1.08999 * 109.46350 * 65.82688 * 3 2 1 31 31 H 1.08996 * 109.46611 * 305.85240 * 3 2 1 32 32 H 1.09000 * 109.50525 * 180.88217 * 4 3 2 33 33 H 1.09000 * 109.53363 * 60.78159 * 4 3 2 34 34 H 1.09002 * 109.51662 * 297.67860 * 5 4 3 35 35 H 1.08006 * 120.77032 * 0.26000 * 8 7 6 36 36 H 1.08003 * 120.42493 * 179.97438 * 9 8 7 37 37 H 0.97000 * 120.00036 * 359.97438 * 11 10 9 38 38 H 0.96998 * 120.00576 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.60557 * 179.97438 * 24 23 10 40 40 H 1.08999 * 109.50396 * 62.32165 * 25 5 4 41 41 H 1.09001 * 109.50007 * 182.43762 * 25 5 4 42 42 H 1.08995 * 109.46259 * 294.18239 * 26 2 1 43 43 H 1.09006 * 109.45606 * 54.15799 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1187 0.5371 1.0144 6 8 5.5359 0.4512 0.8520 7 6 6.2759 0.2596 1.9771 8 6 5.6512 0.0413 3.2025 9 6 6.4422 -0.1493 4.3208 10 6 7.8261 -0.1164 4.1855 11 7 8.6324 -0.3065 5.3048 12 16 10.2810 -0.2696 5.1537 13 8 10.8080 -0.4589 6.4596 14 8 10.6023 -1.1133 4.0562 15 6 10.7241 1.3658 4.6704 16 1 9.9579 2.1144 4.5327 17 6 12.0488 1.6899 4.4682 18 7 12.3796 2.9107 4.1080 19 14 13.3741 0.3952 4.7073 20 1 13.6096 -0.3147 3.4243 21 1 14.6317 1.0500 5.1487 22 1 12.9345 -0.5786 5.7385 23 7 8.3848 0.0948 3.0046 24 6 7.6591 0.2804 1.9177 25 6 3.5183 -0.8714 1.0224 26 6 1.9953 -0.7707 1.1338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8899 30 1 1.7324 1.8608 0.9376 31 1 1.5634 1.9257 -0.8329 32 1 3.9098 2.3514 -0.1309 33 1 3.7819 0.8573 -1.0906 34 1 3.8896 1.0362 1.9559 35 1 4.5740 0.0168 3.2769 36 1 5.9911 -0.3208 5.2870 37 1 8.2283 -0.4606 6.1731 38 1 13.3117 3.1389 3.9661 39 1 8.1501 0.4504 0.9709 40 1 3.7816 -1.3846 0.0975 41 1 3.9102 -1.4292 1.8730 42 1 1.7325 -0.2708 2.0660 43 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:01 Heat of formation + Delta-G solvation = -65.572367 kcal Electronic energy + Delta-G solvation = -27619.987027 eV Core-core repulsion = 23599.842108 eV Total energy + Delta-G solvation = -4020.144919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.73316 -39.44079 -37.80702 -35.59949 -34.50027 -34.39438 -32.97605 -32.88671 -32.09374 -31.28500 -28.65592 -26.71194 -26.32098 -24.11593 -23.59931 -23.11235 -22.09951 -20.27485 -19.13257 -18.22203 -17.94158 -17.55601 -16.85005 -16.36828 -15.82886 -15.54980 -15.35107 -15.05485 -14.93114 -14.47276 -14.35662 -14.03759 -13.80756 -13.68785 -13.32399 -13.16843 -13.05667 -12.86672 -12.80849 -12.66064 -12.20850 -11.93145 -11.68410 -11.57757 -11.42335 -11.29854 -10.99112 -10.83502 -10.75017 -10.56071 -10.43667 -10.23901 -9.90438 -9.61232 -9.17008 -9.09522 -8.89301 -8.79794 -7.57198 -6.70974 -5.21469 1.38310 1.54950 1.93816 3.05806 3.12495 3.24693 3.31566 3.46770 3.90991 4.02646 4.06740 4.33515 4.38023 4.61620 4.66546 4.67493 4.75779 4.78191 4.87804 4.93754 4.99151 5.04864 5.06168 5.16676 5.20389 5.26828 5.38096 5.39891 5.43909 5.51401 5.59764 5.65579 5.82715 5.90123 5.96140 6.11424 6.22084 6.34167 6.58515 6.60538 6.62304 7.33854 7.42049 7.57105 8.30542 8.36280 8.79475 10.41718 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.002518 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.187997 B =11117.941102 C =11619.927771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.112 4.112 5 C 0.086 3.914 6 O -0.302 6.302 7 C 0.031 3.969 8 C -0.134 4.134 9 C -0.177 4.177 10 C 0.366 3.634 11 N -1.036 6.036 12 S 2.665 3.335 13 O -1.005 7.005 14 O -0.981 6.981 15 C -0.989 4.989 16 H 0.120 0.880 17 C 0.155 3.845 18 N -0.825 5.825 19 Si 0.802 3.198 20 H -0.245 1.245 21 H -0.257 1.257 22 H -0.223 1.223 23 N -0.455 5.455 24 C 0.131 3.869 25 C -0.144 4.144 26 C 0.058 3.942 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.279 0.721 39 H 0.168 0.832 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.833 -3.795 -6.209 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.150 4.150 5 C 0.029 3.971 6 O -0.215 6.215 7 C -0.017 4.017 8 C -0.161 4.161 9 C -0.203 4.203 10 C 0.133 3.867 11 N -0.779 5.779 12 S 2.767 3.233 13 O -0.995 6.995 14 O -0.970 6.970 15 C -1.124 5.124 16 H 0.138 0.862 17 C -0.064 4.064 18 N -0.454 5.454 19 Si 0.622 3.378 20 H -0.169 1.169 21 H -0.181 1.181 22 H -0.145 1.145 23 N -0.170 5.170 24 C -0.029 4.029 25 C -0.182 4.182 26 C -0.070 4.070 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.185 0.815 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.884 -4.594 -6.862 23.390 hybrid contribution -1.037 0.609 1.375 1.827 sum -22.921 -3.985 -5.487 23.904 Atomic orbital electron populations 1.22353 0.86957 1.02253 1.00769 1.61940 1.07803 1.13777 1.43468 1.22067 0.94523 0.89213 1.01083 1.21629 0.93727 1.00752 0.98925 1.22422 0.78985 0.96199 0.99514 1.86136 1.18164 1.87812 1.29392 1.19901 0.92640 1.02945 0.86251 1.21405 1.00244 1.02565 0.91904 1.21348 0.92098 1.07015 0.99810 1.17926 0.87936 0.94203 0.86626 1.53759 1.27895 1.83309 1.12913 1.01888 0.69842 0.77898 0.73653 1.93503 1.74992 1.88938 1.42072 1.93440 1.79900 1.69564 1.54128 1.30075 1.01791 1.18427 1.62112 0.86228 1.24366 0.97599 0.95239 0.89222 1.69983 1.19667 1.18271 1.37511 0.87871 0.83949 0.83403 0.82543 1.16894 1.18074 1.14537 1.67455 1.38611 1.13689 0.97225 1.21935 0.87100 0.97021 0.96841 1.22195 0.94467 0.97315 1.04221 1.22055 0.94843 0.98677 0.91376 0.91165 0.91238 0.95620 0.94590 0.89817 0.90219 0.89650 0.91386 0.84554 0.84619 0.74432 0.91023 0.81468 0.89630 0.90590 0.94718 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.59 60.06 0.58 0.71 16 2 N -0.55 -4.02 4.91 -242.96 -1.19 -5.22 16 3 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 4 C -0.11 -0.93 5.75 -26.65 -0.15 -1.08 16 5 C 0.09 0.82 2.18 -26.61 -0.06 0.77 16 6 O -0.30 -3.88 9.82 -19.80 -0.19 -4.07 16 7 C 0.03 0.45 6.62 -39.12 -0.26 0.19 16 8 C -0.13 -1.73 8.36 -39.18 -0.33 -2.06 16 9 C -0.18 -2.55 9.93 -39.24 -0.39 -2.94 16 10 C 0.37 7.00 7.33 -154.85 -1.14 5.87 16 11 N -1.04 -20.49 5.85 31.16 0.18 -20.30 16 12 S 2.66 68.26 3.87 -107.50 -0.42 67.84 16 13 O -1.00 -26.95 16.02 -57.17 -0.92 -27.86 16 14 O -0.98 -27.06 15.71 -57.17 -0.90 -27.96 16 15 C -0.99 -28.25 9.87 30.60 0.30 -27.94 16 16 H 0.12 3.52 8.06 -52.48 -0.42 3.09 16 17 C 0.15 4.53 5.47 -17.82 -0.10 4.43 16 18 N -0.82 -24.28 13.96 55.43 0.77 -23.50 16 19 Si 0.80 21.01 26.54 -169.99 -4.51 16.50 16 20 H -0.25 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.22 -5.91 5.61 56.52 0.32 -5.59 16 23 N -0.46 -9.69 8.33 -12.28 -0.10 -9.79 16 24 C 0.13 2.30 11.13 -17.40 -0.19 2.10 16 25 C -0.14 -1.23 5.40 -26.65 -0.14 -1.38 16 26 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.62 6.36 -51.93 -0.33 0.29 16 35 H 0.14 1.31 5.55 -52.48 -0.29 1.02 16 36 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.42 6.49 8.82 -34.47 -0.30 6.18 16 38 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.65 6.91 -51.93 -0.36 0.29 16 42 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -35.44 358.80 -9.78 -45.22 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.99 Total: 4.29 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.92 Total: -20.54 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.34 Total: -58.82 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -2.01 Total: -59.90 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.51 Total: 16.50 kcal Atomic # 16 Polarization: 68.26 SS G_CDS: -0.42 Total: 67.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.44 -9.78 -45.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.352 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds