Wall clock time and date at job start Tue Mar 31 2020 22:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99891 * 2 1 4 4 O 1.42897 * 109.47227 * 135.00411 * 3 2 1 5 5 C 1.42902 * 113.99951 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46996 * 179.97438 * 5 4 3 7 7 N 1.34264 * 126.12374 * 270.04008 * 6 5 4 8 8 C 1.30499 * 109.26992 * 179.84194 * 7 6 5 9 9 N 1.35305 * 108.88103 * 358.73046 * 8 7 6 10 10 C 1.34031 * 126.12727 * 89.99775 * 6 5 4 11 11 C 1.51036 * 127.81617 * 3.36523 * 10 6 5 12 12 N 1.46865 * 107.90695 * 223.10555 * 11 10 6 13 13 S 1.65600 * 120.52785 * 93.66867 * 12 11 10 14 14 O 1.42103 * 106.39991 * 156.17844 * 13 12 11 15 15 O 1.42095 * 106.40377 * 23.25629 * 13 12 11 16 16 C 1.76199 * 107.21522 * 269.71449 * 13 12 11 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99836 * 179.72073 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28505 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27572 * 18 16 13 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.45379 * 118.94270 * 273.38929 * 12 11 10 25 25 C 1.53599 * 109.43652 * 32.77513 * 24 12 11 26 26 C 1.46695 * 125.24175 * 183.52651 * 9 8 7 27 27 H 1.08004 * 120.00023 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00092 * 180.02562 * 1 2 3 29 29 H 1.07991 * 119.99955 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47341 * 14.99495 * 3 2 1 31 31 H 1.09005 * 109.46692 * 254.99863 * 3 2 1 32 32 H 1.09001 * 109.47192 * 59.99077 * 5 4 3 33 33 H 1.08999 * 109.46912 * 299.99805 * 5 4 3 34 34 H 1.08001 * 125.55695 * 178.70946 * 8 7 6 35 35 H 1.08998 * 109.76949 * 103.57208 * 11 10 6 36 36 H 1.08996 * 109.95160 * 342.74092 * 11 10 6 37 37 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.47485 * 152.76592 * 24 12 11 39 39 H 1.09008 * 109.47505 * 272.77784 * 24 12 11 40 40 H 1.08996 * 109.40982 * 181.53205 * 25 24 12 41 41 H 1.08995 * 109.40371 * 301.29660 * 25 24 12 42 42 H 1.08997 * 109.22069 * 87.19827 * 26 9 8 43 43 H 1.08995 * 109.22561 * 327.85200 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4354 1.0327 6 6 4.9934 2.2573 2.0627 7 7 4.8988 2.5462 3.3704 8 6 6.0294 2.2620 3.9571 9 7 6.8825 1.7512 3.0395 10 6 6.2259 1.7814 1.8374 11 6 6.8375 1.3832 0.5151 12 7 7.5652 0.1233 0.7153 13 16 6.8289 -1.3299 0.4178 14 8 7.8699 -2.2604 0.1534 15 8 5.7728 -1.0651 -0.4952 16 6 6.0692 -1.8470 1.9211 17 1 6.1464 -1.2311 2.8049 18 6 5.3708 -3.0349 1.9675 19 7 5.2765 -3.7847 0.8911 20 14 4.5589 -3.5794 3.5592 21 1 3.5633 -2.5613 3.9806 22 1 3.8767 -4.8813 3.3468 23 1 5.5916 -3.7289 4.6159 24 6 8.9442 0.1725 1.1729 25 6 9.1322 1.3824 2.1002 26 6 8.2285 1.2430 3.3258 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3855 2.1162 0.2659 31 1 2.4755 1.4867 -0.9927 32 1 3.2677 3.2695 1.3203 33 1 4.3579 2.6409 0.0616 34 1 6.2484 2.4107 5.0041 35 1 7.5277 2.1574 0.1800 36 1 6.0541 1.2410 -0.2293 37 1 4.7854 -4.6206 0.9239 38 1 9.1794 -0.7423 1.7168 39 1 9.6091 0.2658 0.3141 40 1 10.1725 1.4345 2.4213 41 1 8.8744 2.2946 1.5621 42 1 8.1631 0.1916 3.6056 43 1 8.6569 1.8079 4.1536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:43 Heat of formation + Delta-G solvation = -40.476368 kcal Electronic energy + Delta-G solvation = -29724.795567 eV Core-core repulsion = 25705.738893 eV Total energy + Delta-G solvation = -4019.056675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93352 -37.62010 -37.17408 -35.32003 -34.18227 -33.95836 -33.34332 -32.98388 -31.31304 -30.15178 -26.97070 -26.18820 -26.07219 -25.16789 -23.92169 -21.08652 -20.74135 -19.75507 -19.29810 -18.55104 -17.40922 -16.84590 -16.41420 -16.26051 -15.82124 -15.63466 -15.02169 -14.77941 -14.69376 -14.38884 -14.06414 -13.83878 -13.51712 -13.30973 -13.24962 -12.85824 -12.59611 -12.23652 -11.99377 -11.82894 -11.81903 -11.42420 -11.35131 -11.20949 -11.14241 -11.09284 -10.60391 -10.57902 -10.34849 -10.29008 -10.15196 -9.75360 -9.44778 -9.17216 -9.15932 -8.95620 -8.91470 -8.36959 -7.95165 -6.64513 -5.24021 2.11203 2.33991 2.51651 3.04962 3.12923 3.16966 3.25505 3.29925 4.10186 4.38849 4.50810 4.61641 4.70582 4.78345 4.87697 4.96644 5.08543 5.26291 5.30275 5.42756 5.46055 5.51667 5.57430 5.58925 5.64547 5.71485 5.75310 5.76024 5.82624 5.86069 6.00005 6.11830 6.18314 6.23115 6.35454 6.53612 6.79161 6.93638 6.97150 7.00235 7.37830 7.45913 7.51075 7.69729 8.02531 8.39965 8.96158 10.29480 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008213 B = 0.007091 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.542133 B = 3947.515388 C = 5381.156036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C 0.090 3.910 4 O -0.361 6.361 5 C 0.151 3.849 6 C 0.003 3.997 7 N -0.479 5.479 8 C 0.173 3.827 9 N -0.447 5.447 10 C 0.007 3.993 11 C 0.193 3.807 12 N -1.012 6.012 13 S 2.712 3.288 14 O -1.005 7.005 15 O -0.993 6.993 16 C -1.004 5.004 17 H 0.095 0.905 18 C 0.139 3.861 19 N -0.848 5.848 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.267 1.267 24 C 0.124 3.876 25 C -0.144 4.144 26 C 0.107 3.893 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.201 0.799 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.290 0.710 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 12.942 2.362 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.151 4.151 3 C 0.014 3.986 4 O -0.280 6.280 5 C 0.074 3.926 6 C -0.126 4.126 7 N -0.198 5.198 8 C -0.110 4.110 9 N -0.130 5.130 10 C -0.110 4.110 11 C 0.065 3.935 12 N -0.845 5.845 13 S 2.813 3.187 14 O -0.995 6.995 15 O -0.983 6.983 16 C -1.138 5.138 17 H 0.114 0.886 18 C -0.078 4.078 19 N -0.478 5.478 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.002 4.002 25 C -0.183 4.183 26 C -0.015 4.015 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.217 0.783 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.487 12.448 1.903 12.835 hybrid contribution 0.105 -0.490 1.249 1.346 sum 2.591 11.958 3.152 12.635 Atomic orbital electron populations 1.23689 0.95499 1.01600 1.02891 1.22925 0.95517 0.99146 0.97531 1.21475 0.88926 0.95399 0.92811 1.88180 1.44033 1.36024 1.59755 1.20356 0.90080 0.87690 0.94494 1.19627 0.92759 1.08018 0.92176 1.70097 1.21627 1.22164 1.05911 1.24795 0.86576 1.02697 0.96892 1.45472 1.13999 1.45895 1.07655 1.21463 0.94396 1.06252 0.88938 1.19829 0.96031 0.86528 0.91067 1.58148 1.20415 1.22328 1.83641 1.00674 0.72581 0.69422 0.76024 1.93362 1.59572 1.59767 1.86833 1.93358 1.55938 1.83784 1.65247 1.30375 1.49419 1.15318 1.18668 0.88636 1.24643 0.91663 0.93667 0.97868 1.69882 1.36231 1.13010 1.28664 0.86301 0.79883 0.78248 0.81812 1.18560 1.20148 1.19139 1.21127 0.83448 0.98417 0.97244 1.22296 0.99795 1.00207 0.96027 1.21899 0.79671 1.01267 0.98682 0.88926 0.88182 0.85822 0.93434 0.92277 0.92511 0.92329 0.78279 0.89839 0.86928 0.89986 0.89719 0.91931 0.88911 0.90354 0.89157 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.81 14.31 29.01 0.42 -2.39 16 2 C -0.13 -2.29 9.89 -36.03 -0.36 -2.65 16 3 C 0.09 1.49 6.35 36.01 0.23 1.72 16 4 O -0.36 -7.43 10.31 -35.23 -0.36 -7.79 16 5 C 0.15 2.60 6.16 36.01 0.22 2.82 16 6 C 0.00 0.06 6.72 -83.01 -0.56 -0.50 16 7 N -0.48 -8.93 11.26 -10.92 -0.12 -9.05 16 8 C 0.17 2.68 12.49 -90.14 -1.13 1.55 16 9 N -0.45 -6.93 3.11 -113.83 -0.35 -7.29 16 10 C 0.01 0.13 6.34 -81.59 -0.52 -0.39 16 11 C 0.19 3.31 5.54 -4.83 -0.03 3.28 16 12 N -1.01 -19.75 2.88 -115.68 -0.33 -20.08 16 13 S 2.71 71.90 4.95 -107.50 -0.53 71.37 16 14 O -1.00 -29.04 17.08 -57.17 -0.98 -30.02 16 15 O -0.99 -28.76 16.64 -57.17 -0.95 -29.72 16 16 C -1.00 -28.16 9.75 30.60 0.30 -27.86 16 17 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 18 C 0.14 3.98 5.46 -17.82 -0.10 3.88 16 19 N -0.85 -25.26 13.19 55.43 0.73 -24.53 16 20 Si 0.91 21.72 29.54 -169.99 -5.02 16.69 16 21 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C 0.12 1.89 5.79 -4.33 -0.03 1.86 16 25 C -0.14 -1.57 5.57 -26.47 -0.15 -1.72 16 26 C 0.11 1.28 6.44 -3.98 -0.03 1.26 16 27 H 0.09 1.10 7.90 -52.48 -0.41 0.69 16 28 H 0.10 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 30 H 0.05 0.66 7.86 -51.93 -0.41 0.25 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.86 7.50 -51.93 -0.39 0.47 16 34 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.08 1.10 6.93 -51.93 -0.36 0.74 16 36 H 0.11 2.09 6.21 -51.93 -0.32 1.76 16 37 H 0.29 7.84 8.31 -40.82 -0.34 7.50 16 38 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 39 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.83 6.39 -51.93 -0.33 0.50 16 42 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -38.86 370.47 -10.02 -48.88 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.96 Total: 5.08 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -1.72 Total: -19.12 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.08 Total: -60.95 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -2.29 Total: -67.53 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 71.90 SS G_CDS: -0.53 Total: 71.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.86 -10.02 -48.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.406 kcal (2) G-P(sol) polarization free energy of solvation -38.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds