Wall clock time and date at job start Wed Apr 1 2020 00:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 O 1.42897 * 109.47335 * 134.99934 * 3 2 1 5 5 C 1.42894 * 114.00232 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47303 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.89001 * 176.06590 * 6 5 4 8 8 C 1.50815 * 109.90139 * 54.99814 * 6 5 4 9 9 C 1.35039 * 124.17562 * 251.67553 * 8 6 5 10 10 N 1.33677 * 107.82033 * 179.76593 * 9 8 6 11 11 C 1.30733 * 109.20146 * 0.14108 * 10 9 8 12 12 N 1.35323 * 108.76845 * 359.96789 * 11 10 9 13 13 C 1.46499 * 126.52039 * 179.90826 * 12 11 10 14 14 C 1.50824 * 124.37352 * 359.51090 * 9 8 6 15 15 C 1.53369 * 108.83793 * 18.04740 * 14 9 8 16 16 N 1.47015 * 109.20458 * 314.60193 * 15 14 9 17 17 S 1.65598 * 120.83248 * 244.27251 * 16 15 14 18 18 O 1.42095 * 106.40202 * 23.49006 * 17 16 15 19 19 O 1.42104 * 106.40116 * 156.41114 * 17 16 15 20 20 C 1.76201 * 107.21887 * 269.94902 * 17 16 15 21 21 H 1.08004 * 119.99740 * 0.02562 * 20 17 16 22 22 C 1.37871 * 120.00030 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00011 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99911 * 180.02562 * 22 20 17 25 25 H 1.48502 * 109.47047 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47178 * 119.99568 * 24 22 20 27 27 H 1.48500 * 109.47056 * 239.99727 * 24 22 20 28 28 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 30 30 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46998 * 255.00367 * 3 2 1 32 32 H 1.09002 * 109.46470 * 15.00112 * 3 2 1 33 33 H 1.08996 * 109.47111 * 300.00026 * 5 4 3 34 34 H 1.09001 * 109.47034 * 59.99921 * 5 4 3 35 35 H 1.08004 * 125.61440 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47265 * 270.00276 * 13 12 11 37 37 H 1.08999 * 109.47249 * 30.00355 * 13 12 11 38 38 H 1.09009 * 109.46975 * 150.00213 * 13 12 11 39 39 H 1.08997 * 109.57564 * 137.85679 * 14 9 8 40 40 H 1.09001 * 109.57359 * 258.24265 * 14 9 8 41 41 H 1.08997 * 109.51377 * 74.48542 * 15 14 9 42 42 H 1.08995 * 109.52131 * 194.60426 * 15 14 9 43 43 H 0.97004 * 119.99720 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 5.0106 2.2540 2.0777 7 1 5.6532 3.1343 2.0951 8 6 5.8277 1.0282 1.7544 9 6 5.7843 -0.1208 2.4626 10 7 6.6284 -0.9856 1.8911 11 6 7.1944 -0.4161 0.8594 12 7 6.7188 0.8454 0.7431 13 6 7.0927 1.8275 -0.2776 14 6 4.9226 -0.3379 3.6812 15 6 3.8205 0.7284 3.7048 16 7 4.4116 2.0414 3.4081 17 16 4.4057 3.2501 4.5400 18 8 4.2958 2.6140 5.8059 19 8 5.4733 4.1240 4.1994 20 6 2.9193 4.1690 4.3142 21 1 2.2225 3.8867 3.5387 22 6 2.6457 5.2482 5.1273 23 7 3.4939 5.5916 6.0718 24 14 1.0695 6.2219 4.8883 25 1 0.2909 5.6360 3.7676 26 1 0.2618 6.1697 6.1334 27 1 1.4031 7.6343 4.5735 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0045 30 1 1.8500 -0.9353 -0.0004 31 1 2.4755 1.4868 -0.9927 32 1 1.3854 2.1160 0.2660 33 1 4.3579 2.6408 0.0617 34 1 3.2677 3.2694 1.3205 35 1 7.9216 -0.8767 0.2071 36 1 7.9424 2.4122 0.0747 37 1 7.3642 1.3099 -1.1976 38 1 6.2494 2.4912 -0.4694 39 1 4.4711 -1.3290 3.6373 40 1 5.5331 -0.2522 4.5801 41 1 3.0675 0.4904 2.9536 42 1 3.3568 0.7510 4.6910 43 1 3.3012 6.3508 6.6442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:27 Heat of formation + Delta-G solvation = -39.935243 kcal Electronic energy + Delta-G solvation = -29545.483156 eV Core-core repulsion = 25526.449946 eV Total energy + Delta-G solvation = -4019.033210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.03248 -38.28552 -36.39637 -35.36565 -34.37506 -33.99005 -33.61615 -33.09734 -30.94470 -29.80544 -27.57590 -26.46719 -26.15274 -25.33344 -22.83481 -22.58564 -20.54646 -20.00299 -19.20508 -18.51918 -17.37242 -16.79551 -16.55662 -16.06170 -15.89325 -15.72163 -15.30960 -14.95429 -14.68489 -14.35464 -13.98003 -13.88154 -13.51309 -13.30257 -13.23847 -12.76277 -12.74551 -12.64982 -12.16614 -11.98018 -11.81327 -11.78078 -11.41044 -11.26847 -11.24722 -10.97751 -10.84648 -10.62090 -10.32194 -10.25247 -10.09460 -9.78434 -9.64174 -9.30679 -9.28725 -9.26165 -8.89731 -8.24689 -7.81800 -6.72701 -5.35097 2.10931 2.16004 2.27487 2.93794 3.02297 3.11142 3.17395 3.41885 3.86853 4.01443 4.39486 4.60729 4.65573 4.76837 4.80672 4.90952 5.02269 5.09955 5.19532 5.28992 5.29670 5.32300 5.48370 5.53509 5.54069 5.67440 5.77273 5.84012 5.90210 5.93651 6.01283 6.26884 6.30818 6.35427 6.49934 6.51834 6.59466 6.71601 6.90979 7.08049 7.29647 7.33357 7.41195 7.53555 7.95512 8.36458 8.86049 10.20972 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005327 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.054247 B = 5254.577673 C = 6559.516936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.084 3.916 4 O -0.361 6.361 5 C 0.053 3.947 6 C 0.237 3.763 7 H 0.120 0.880 8 C -0.016 4.016 9 C 0.026 3.974 10 N -0.489 5.489 11 C 0.165 3.835 12 N -0.452 5.452 13 C 0.070 3.930 14 C -0.047 4.047 15 C 0.126 3.874 16 N -0.997 5.997 17 S 2.713 3.287 18 O -0.997 6.997 19 O -1.006 7.006 20 C -1.017 5.017 21 H 0.103 0.897 22 C 0.133 3.867 23 N -0.845 5.845 24 Si 0.919 3.081 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -7.246 -15.644 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.162 4.162 3 C 0.007 3.993 4 O -0.280 6.280 5 C -0.026 4.026 6 C 0.128 3.872 7 H 0.138 0.862 8 C -0.132 4.132 9 C -0.104 4.104 10 N -0.207 5.207 11 C -0.116 4.116 12 N -0.135 5.135 13 C -0.073 4.073 14 C -0.087 4.087 15 C -0.001 4.001 16 N -0.830 5.830 17 S 2.815 3.185 18 O -0.987 6.987 19 O -0.996 6.996 20 C -1.151 5.151 21 H 0.122 0.878 22 C -0.085 4.085 23 N -0.475 5.475 24 Si 0.743 3.257 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.218 0.782 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.908 -7.862 -14.560 16.572 hybrid contribution -1.360 1.694 -1.079 2.425 sum -0.451 -6.168 -15.639 16.818 Atomic orbital electron populations 1.23810 0.95619 1.02094 1.00601 1.22724 0.95549 0.98209 0.99754 1.21527 0.89574 0.95828 0.92333 1.88040 1.44061 1.36323 1.59608 1.23073 0.93520 0.88567 0.97424 1.19144 0.90715 0.94060 0.83317 0.86212 1.20874 0.98759 0.99914 0.93675 1.20275 1.00551 0.89921 0.99651 1.69953 1.10911 1.31841 1.07976 1.24833 1.03928 0.82516 1.00298 1.44812 1.32439 1.13120 1.23174 1.22078 1.02457 0.92272 0.90498 1.20308 0.95602 0.99562 0.93251 1.21396 0.94764 0.81348 1.02543 1.58309 1.72398 1.26899 1.25380 1.00602 0.75750 0.71153 0.70975 1.93361 1.88813 1.76677 1.39884 1.93336 1.57704 1.64729 1.83861 1.30629 1.28469 1.27688 1.28276 0.87825 1.24750 0.97587 0.94781 0.91365 1.69907 1.35287 1.26190 1.16087 0.86157 0.81114 0.79158 0.79285 1.18630 1.19518 1.19651 0.88479 0.88018 0.86813 0.93108 0.92703 0.93417 0.91028 0.78245 0.90294 0.89551 0.89753 0.90126 0.90672 0.89765 0.88757 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 14.31 29.02 0.42 -1.44 16 2 C -0.14 -1.65 9.89 -36.02 -0.36 -2.01 16 3 C 0.08 1.03 6.35 36.01 0.23 1.26 16 4 O -0.36 -5.47 7.39 -35.23 -0.26 -5.73 16 5 C 0.05 0.79 5.78 37.16 0.21 1.00 16 6 C 0.24 4.23 2.97 -68.50 -0.20 4.03 16 7 H 0.12 2.19 6.97 -51.93 -0.36 1.82 16 8 C -0.02 -0.27 5.64 -81.82 -0.46 -0.73 16 9 C 0.03 0.47 7.01 -82.87 -0.58 -0.11 16 10 N -0.49 -8.48 11.25 -10.73 -0.12 -8.60 16 11 C 0.16 2.25 12.58 -89.92 -1.13 1.12 16 12 N -0.45 -6.12 3.14 -121.31 -0.38 -6.50 16 13 C 0.07 0.60 11.06 59.85 0.66 1.26 16 14 C -0.05 -0.84 6.46 -27.63 -0.18 -1.02 16 15 C 0.13 2.35 6.03 -3.57 -0.02 2.33 16 16 N -1.00 -20.75 2.93 -107.20 -0.31 -21.07 16 17 S 2.71 71.59 5.01 -107.50 -0.54 71.05 16 18 O -1.00 -29.04 16.72 -57.17 -0.96 -30.00 16 19 O -1.01 -28.71 16.64 -57.17 -0.95 -29.66 16 20 C -1.02 -27.21 9.74 30.60 0.30 -26.91 16 21 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 22 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 23 N -0.84 -24.48 13.19 55.43 0.73 -23.75 16 24 Si 0.92 20.06 29.54 -169.99 -5.02 15.04 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H 0.10 0.92 7.90 -52.49 -0.41 0.51 16 29 H 0.10 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.05 0.56 6.54 -51.93 -0.34 0.23 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.68 6.36 -51.92 -0.33 0.35 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.47 5.98 -51.93 -0.31 1.16 16 42 H 0.09 1.81 7.09 -51.93 -0.37 1.44 16 43 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -37.03 368.27 -9.36 -46.39 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.88 Total: 4.96 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.21 Total: -17.68 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.08 Total: -59.92 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -2.17 Total: -65.39 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 71.59 SS G_CDS: -0.54 Total: 71.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.03 -9.36 -46.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.450 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds