Wall clock time and date at job start Wed Apr 1 2020 00:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00191 * 2 1 4 4 O 1.42898 * 109.47594 * 134.99947 * 3 2 1 5 5 C 1.42898 * 114.00193 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47166 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.88932 * 183.93369 * 6 5 4 8 8 C 1.50821 * 109.90215 * 305.00072 * 6 5 4 9 9 C 1.35033 * 124.17653 * 108.44653 * 8 6 5 10 10 N 1.33679 * 107.81837 * 180.33423 * 9 8 6 11 11 C 1.30730 * 109.20329 * 359.89505 * 10 9 8 12 12 N 1.35325 * 108.77021 * 0.04151 * 11 10 9 13 13 C 1.46494 * 126.52505 * 180.30379 * 12 11 10 14 14 C 1.50819 * 124.37743 * 0.40441 * 9 8 6 15 15 C 1.53376 * 108.83389 * 341.98788 * 14 9 8 16 16 N 1.47051 * 109.18054 * 45.42600 * 15 14 9 17 17 S 1.65602 * 120.86014 * 115.74123 * 16 15 14 18 18 O 1.42103 * 106.40299 * 23.51871 * 17 16 15 19 19 O 1.42097 * 106.40243 * 156.43529 * 17 16 15 20 20 C 1.76195 * 107.21964 * 269.97968 * 17 16 15 21 21 H 1.08008 * 119.99917 * 359.97438 * 20 17 16 22 22 C 1.37878 * 120.00321 * 180.02562 * 20 17 16 23 23 N 1.31516 * 119.99810 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00254 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.47181 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47046 * 120.00011 * 24 22 20 27 27 H 1.48503 * 109.47244 * 239.99949 * 24 22 20 28 28 H 1.07997 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99807 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99787 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47130 * 14.99138 * 3 2 1 32 32 H 1.09005 * 109.47053 * 254.99705 * 3 2 1 33 33 H 1.08996 * 109.47582 * 59.99549 * 5 4 3 34 34 H 1.09004 * 109.46779 * 299.99419 * 5 4 3 35 35 H 1.07997 * 125.61634 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.47019 * 269.68769 * 13 12 11 37 37 H 1.09001 * 109.46973 * 29.68044 * 13 12 11 38 38 H 1.08995 * 109.47330 * 149.68716 * 13 12 11 39 39 H 1.09004 * 109.57867 * 222.18670 * 14 9 8 40 40 H 1.08994 * 109.58297 * 101.79414 * 14 9 8 41 41 H 1.08998 * 109.51936 * 285.51422 * 15 14 9 42 42 H 1.08999 * 109.56694 * 165.36758 * 15 14 9 43 43 H 0.96994 * 120.00337 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 5.0099 2.2545 2.0785 7 1 5.5663 3.1845 2.1954 8 6 4.4036 1.8495 3.3987 9 6 4.5112 0.6154 3.9361 10 7 3.8503 0.6161 5.0981 11 6 3.3401 1.8023 5.3018 12 7 3.6659 2.6014 4.2594 13 6 3.2995 4.0099 4.0927 14 6 5.2587 -0.5289 3.2984 15 6 5.4645 -0.2179 1.8107 16 7 5.9223 1.1720 1.6664 17 16 7.4237 1.5128 1.0564 18 8 7.8035 0.3890 0.2739 19 8 7.3556 2.8338 0.5374 20 6 8.5395 1.5702 2.4188 21 1 8.1772 1.3962 3.4213 22 6 9.8750 1.8384 2.2053 23 7 10.3161 2.0508 0.9847 24 14 11.0578 1.9000 3.6498 25 1 10.3173 1.6279 4.9079 26 1 12.1160 0.8743 3.4671 27 1 11.6806 3.2462 3.7226 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3855 2.1161 0.2658 32 1 2.4756 1.4867 -0.9927 33 1 3.2678 3.2695 1.3203 34 1 4.3580 2.6407 0.0616 35 1 2.7546 2.0962 6.1605 36 1 2.3501 4.0779 3.5614 37 1 3.2021 4.4784 5.0721 38 1 4.0734 4.5215 3.5205 39 1 4.6800 -1.4467 3.4030 40 1 6.2272 -0.6482 3.7839 41 1 4.5226 -0.3483 1.2777 42 1 6.2136 -0.8930 1.3968 43 1 11.2556 2.2399 0.8345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:31 Heat of formation + Delta-G solvation = -40.203768 kcal Electronic energy + Delta-G solvation = -29504.226533 eV Core-core repulsion = 25485.181679 eV Total energy + Delta-G solvation = -4019.044854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.99800 -38.32750 -36.41301 -35.37494 -34.36126 -34.00427 -33.65978 -33.07766 -30.95243 -29.77477 -27.53930 -26.50686 -26.10615 -25.37383 -22.81922 -22.59767 -20.52973 -20.08898 -19.28169 -18.27093 -17.44447 -16.78088 -16.57736 -16.28119 -15.85345 -15.66627 -15.18649 -14.94883 -14.84645 -14.33410 -13.95228 -13.77670 -13.54828 -13.33103 -13.19921 -12.99829 -12.71983 -12.38679 -12.25089 -12.07841 -11.84558 -11.71871 -11.41393 -11.25177 -11.22790 -11.00752 -10.82498 -10.57452 -10.34218 -10.30787 -10.15198 -9.79992 -9.61350 -9.31767 -9.25591 -9.24856 -8.92976 -8.25353 -7.78073 -6.69852 -5.31288 2.05266 2.16903 2.30437 2.95723 3.06003 3.14767 3.23746 3.46307 3.81170 4.05802 4.39227 4.63589 4.71171 4.78480 4.83123 4.85174 5.00856 5.04292 5.21042 5.24686 5.30553 5.35402 5.38922 5.43950 5.53331 5.65455 5.73943 5.76558 5.86676 5.96767 6.02306 6.25826 6.32468 6.36188 6.44270 6.52989 6.54538 6.71103 6.90951 7.11223 7.28027 7.34272 7.43574 7.52793 8.01736 8.40332 8.90359 10.23640 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004794 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.847507 B = 5838.628843 C = 6818.569714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C 0.083 3.917 4 O -0.363 6.363 5 C 0.057 3.943 6 C 0.244 3.756 7 H 0.115 0.885 8 C -0.019 4.019 9 C 0.031 3.969 10 N -0.488 5.488 11 C 0.165 3.835 12 N -0.452 5.452 13 C 0.071 3.929 14 C -0.050 4.050 15 C 0.124 3.876 16 N -0.997 5.997 17 S 2.714 3.286 18 O -0.997 6.997 19 O -1.006 7.006 20 C -1.017 5.017 21 H 0.104 0.896 22 C 0.134 3.866 23 N -0.847 5.847 24 Si 0.917 3.083 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.200 0.800 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 2.384 3.240 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.158 4.158 3 C 0.007 3.993 4 O -0.282 6.282 5 C -0.022 4.022 6 C 0.134 3.866 7 H 0.132 0.868 8 C -0.135 4.135 9 C -0.099 4.099 10 N -0.207 5.207 11 C -0.115 4.115 12 N -0.135 5.135 13 C -0.072 4.072 14 C -0.089 4.089 15 C -0.002 4.002 16 N -0.830 5.830 17 S 2.816 3.184 18 O -0.988 6.988 19 O -0.996 6.996 20 C -1.151 5.151 21 H 0.122 0.878 22 C -0.083 4.083 23 N -0.477 5.477 24 Si 0.741 3.259 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.217 0.783 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.789 1.862 2.784 17.120 hybrid contribution 0.660 1.152 0.887 1.596 sum -16.129 3.014 3.670 16.814 Atomic orbital electron populations 1.23758 0.95583 1.01922 1.01397 1.22787 0.95555 0.98464 0.99027 1.21537 0.89273 0.95463 0.93066 1.88049 1.43898 1.36355 1.59856 1.22996 0.92354 0.87194 0.99653 1.19047 0.89146 0.91825 0.86555 0.86784 1.20868 1.03252 0.93461 0.95909 1.20234 1.02390 0.94444 0.92841 1.69950 1.13274 1.20203 1.17233 1.24816 1.05562 0.86774 0.94383 1.44800 1.40350 1.10749 1.17650 1.22041 1.02061 0.79124 1.03987 1.20336 0.98999 0.94359 0.95238 1.21436 1.01768 0.82065 0.94927 1.58357 1.32880 1.10509 1.81213 1.00580 0.70217 0.72659 0.74969 1.93361 1.80956 1.54143 1.70314 1.93343 1.86065 1.39937 1.80268 1.30654 1.07250 1.63591 1.13613 0.87793 1.24735 0.97871 0.88681 0.97047 1.69899 1.18318 1.38697 1.20785 0.86170 0.79620 0.78566 0.81507 1.18535 1.19496 1.19661 0.88776 0.87983 0.86408 0.93413 0.92319 0.93191 0.91607 0.78323 0.90795 0.89462 0.89492 0.90259 0.90275 0.89894 0.88561 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 14.31 29.01 0.42 -1.34 16 2 C -0.14 -1.56 9.89 -36.03 -0.36 -1.91 16 3 C 0.08 0.99 6.35 36.00 0.23 1.21 16 4 O -0.36 -5.43 7.40 -35.23 -0.26 -5.69 16 5 C 0.06 0.85 5.81 37.16 0.22 1.06 16 6 C 0.24 4.34 2.73 -68.50 -0.19 4.15 16 7 H 0.11 2.05 7.46 -51.93 -0.39 1.66 16 8 C -0.02 -0.32 5.64 -81.81 -0.46 -0.78 16 9 C 0.03 0.56 7.01 -82.87 -0.58 -0.02 16 10 N -0.49 -8.61 11.25 -10.73 -0.12 -8.73 16 11 C 0.17 2.31 12.58 -89.93 -1.13 1.17 16 12 N -0.45 -6.18 3.14 -121.31 -0.38 -6.56 16 13 C 0.07 0.62 10.93 59.84 0.65 1.27 16 14 C -0.05 -0.87 6.46 -27.63 -0.18 -1.05 16 15 C 0.12 2.30 6.10 -3.55 -0.02 2.27 16 16 N -1.00 -20.64 2.94 -107.17 -0.31 -20.95 16 17 S 2.71 71.36 4.99 -107.50 -0.54 70.82 16 18 O -1.00 -28.73 16.64 -57.17 -0.95 -29.69 16 19 O -1.01 -28.19 16.93 -57.17 -0.97 -29.16 16 20 C -1.02 -28.11 9.75 30.60 0.30 -27.81 16 21 H 0.10 2.73 7.81 -52.48 -0.41 2.32 16 22 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 23 N -0.85 -24.74 13.19 55.43 0.73 -24.01 16 24 Si 0.92 20.78 29.54 -169.99 -5.02 15.76 16 25 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H 0.09 0.77 7.90 -52.49 -0.41 0.36 16 29 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 31 H 0.05 0.50 7.86 -51.93 -0.41 0.09 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.60 8.01 -51.93 -0.42 0.18 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.08 1.42 5.99 -51.93 -0.31 1.11 16 42 H 0.10 1.83 6.96 -51.93 -0.36 1.46 16 43 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -37.21 371.68 -9.49 -46.69 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.06 Total: 4.03 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.20 Total: -18.12 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.09 Total: -60.25 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -2.18 Total: -64.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 71.36 SS G_CDS: -0.54 Total: 70.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.21 -9.49 -46.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.490 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds